Trematomus bernacchii (emerald rockcod): 117482565
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Entry
117482565 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor NF-kappa-B p105 subunit-like
KO
K02580
nuclear factor NF-kappa-B p105 subunit
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04210
Apoptosis
tben04218
Cellular senescence
tben04620
Toll-like receptor signaling pathway
tben04621
NOD-like receptor signaling pathway
tben04622
RIG-I-like receptor signaling pathway
tben04623
Cytosolic DNA-sensing pathway
tben04625
C-type lectin receptor signaling pathway
tben04920
Adipocytokine signaling pathway
tben05132
Salmonella infection
tben05168
Herpes simplex virus 1 infection
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117482565
09140 Cellular Processes
09143 Cell growth and death
04210 Apoptosis
117482565
04218 Cellular senescence
117482565
09150 Organismal Systems
09151 Immune system
04620 Toll-like receptor signaling pathway
117482565
04621 NOD-like receptor signaling pathway
117482565
04622 RIG-I-like receptor signaling pathway
117482565
04623 Cytosolic DNA-sensing pathway
117482565
04625 C-type lectin receptor signaling pathway
117482565
09152 Endocrine system
04920 Adipocytokine signaling pathway
117482565
09160 Human Diseases
09172 Infectious disease: viral
05168 Herpes simplex virus 1 infection
117482565
09171 Infectious disease: bacterial
05132 Salmonella infection
117482565
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117482565
Transcription factors [BR:
tben03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
RHR (Rel homology region) Rel/Ankyrin
117482565
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD_DNA_bind
RHD_dimer
Ank_2
Ank
Ank_5
Ank_4
Ank_3
Death
RTC_insert
Motif
Other DBs
NCBI-GeneID:
117482565
NCBI-ProteinID:
XP_033986590
LinkDB
All DBs
Position
Unknown
AA seq
932 aa
AA seq
DB search
MAAEDHYLHTSTQIFDNLMMDPPWEFTHFPGMSQTTSLRTADGPFLQIIEQPKQRGFRFR
YGCEGPSHGGLPGASSEKNRKTYPAVKISNYQGPARVVVQLVTALTPLPQLHAHSLVGKQ
CDKGICVTELLPKDSNISFPNLGILHVTKKNVAKTLEERMVEAFRLGYSCGVSIHPEIDA
MQGEVRVPRELSEHQRSVICSTASQQAKEMDLSVVRLMFTAFLPDSDGGFTRRLEPVVSD
PIYDSKAPNASNLKIVRMDRTAGCVSGGEEVYLLCDKVQKDDIQVRFYEEDDSGLIWEAL
GDFSPTDVHRQFAIVFKTPKYRDQNLQKPTSVFVQLKRKSDNETSEPKPFTYHPQIIDKE
EVQRKRQKTLPNFHDLSXGGGGGLYRGGGTGGGGGGGGGTGGGGGYFQGFTTYNYGGGGG
GGGGFSTGYSAGLGGGGIKHSERNTFSYVLMICDVASEGGSDPDEDSGSGVALRAAAQEG
GLELGERSEEEGVSVEEAGQHREDVFLQLQALFQYSVTGDSAYLLAAQRPLIIAQDEDGD
TGLHLAVLHSQQGALQSLTQVVSALPGPEVLNMRNHLYQTALHLAVITHQRKAVEALLLA
GADPTLTDRHGNTALHLAAGLEGGAELIQILLKRGDVRGGMQLCNTAGLCAIHLAVLANQ
LPSLRELLEGGADVEVRERSSGRSALHLSTEADNVSLAGCLLLEGNAKVDCSTFNGSTSL
HIAAGRGSLKLTALLMAAGADPQKENFEPLFFREEECGDEEEGEEEDEGYIPGNTPISMA
ANAQVLDLLNGKEYEPKSPHKAFAAPQGDLASLDVQVKQQVCRALESEGCWENLAHSLSL
GILNTAFRLSPSPAKTLLDSYEVSGGTVRDLLAGLRSVGECRALSVLEEALRNHNDTQLT
NESGGEVQVQDVKAEVQIDSGVCDSGVELSTA
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atggctgcagaagaccactacctgcacacctccactcagatctttgacaacctgatgatg
gacccgccctgggagttcactcacttccccgggatgtcccagacgacgtctctgaggaca
gcggacggtccgttcctgcagatcatagagcagcccaaacagcggggcttcaggttcagg
tacggatgtgagggtccgtctcacgggggattaccgggagcctccagtgagaagaacagg
aagacttaccccgccgtcaagatcagtaactaccagggtccggcgcgcgtggtggtccag
ctggtgacggcgctgactcccctccctcagctccacgctcacagtctggtggggaaacag
tgcgataaagggatctgcgtcaccgaactgctgcccaaagactccaacatcagcttccct
aacctgggcatcctccacgtcaccaagaagaacgtggcgaagactctggaggagaggatg
gtggaggccttcaggctgggctacagctgcggagtctccatccaccccgagatcgacgcc
atgcagggggaggtccgggtgccccgagaactctccgagcaccagcgcagtgtgatctgc
agcacagcctcccagcaggcgaaggagatggacctcagcgtggtgagactcatgttcaca
gccttcctccccgacagcgacggaggcttcaccagacgcctcgagcccgtcgtttcagac
cccatctacgacagcaaagccccgaacgcctctaatctgaagattgttcggatggatcga
acggccggctgtgtgagcggaggagaggaggtttacctgctctgtgacaaggtgcagaaa
gatgatatccaggtgaggttctatgaagaggacgactcggggttaatctgggaggctctg
ggagatttttccccgacagacgtgcacagacagttcgccatcgtgttcaaaactccgaag
tatcgcgaccagaatctccagaaacccacgtcggtgttcgttcagctgaagagaaaatct
gacaacgagaccagcgaacccaaacccttcacctaccacccccagatcatagataaagag
gaagtgcagaggaagagacagaagacgttgcccaacttccacgacctcagtnnggggggg
ggaggaggtctgtaccgaggaggaggaacaggaggtggaggaggaggaggaggaggaaca
ggaggaggaggaggttacttccagggcttcactacctacaactatggaggaggaggagga
ggaggaggaggtttctccactggatactcagctggtctgggaggaggaggcatcaaacac
agtgagagaaatactttttcctatgtcctgatgatatgtgatgttgcttcagagggcggc
agcgacccggacgaggactcggggtcgggggtcgctctgagagccgctgcccaggaagga
ggcctcgagctgggggagagaagtgaggaggagggggtcagtgtggaggaggcaggacaa
cacagagaggatgtctttctgcagcttcaggctctgtttcagtactcggtgactggagac
tctgcctaccttctggctgctcagcgccctctgattatcgctcaggacgaggacggagac
actggtctccacctggcggtcctccacagccagcagggggcgctgcagagtctgactcag
gtcgtctctgctctacccggaccggaggttctcaacatgaggaaccacctctaccagact
gctttgcacctggcggtgataacgcatcagaggaaggcggtcgaagcgctcctattggcc
ggcgccgacccgactctcacggatcgtcacggcaacacagcgctccacctggctgccggg
ctggaggggggggcggagcttattcagatcctcctgaagagaggagacgtgaggggggga
atgcagctctgcaatacagcaggtttgtgtgcgatccacctggcggtcctggccaatcag
ctgccttctctgcgggagctgctggagggcggggccgacgtggaggttcgggagcgaagc
agcggccgctccgcgctgcatctcagcaccgaggccgacaacgtgtcgctggccggctgc
ctgctgctggagggaaacgcaaaggtggactgctccactttcaacggctccacatcgctc
cacatcgctgcaggacgaggctctctcaaactgaccgctctgctgatggctgcaggtgcg
gaccctcagaaggagaacttcgagccgctcttcttcagggaggaggagtgcggtgatgaa
gaggagggtgaagaggaagatgaaggttacatcccaggaaacacgcccatcagcatggcc
gccaacgctcaggtgttggatcttctgaatggtaaagagtatgaaccaaagtctccacac
aaagccttcgccgctcctcaaggtgacctggcgagtctggacgtgcaggtgaagcagcag
gtgtgtcgcgctctggagagtgaaggatgctgggaaaacctggctcacagtctgagcctc
gggatcctcaacacggccttcaggctgagcccctcccccgccaaaaccctgctggacagc
tacgaggtgtcaggtgggacggtgcgggatctactcgctggtctgaggtcagtcggagag
tgcagagcgctgagcgtcctggaggaggctctgcgtaaccacaacgacactcagctgacc
aatgagagcggaggagaggttcaggtgcaggatgtgaaggcggaggtgcagatcgacagc
ggggtgtgtgacagcggagtggagctctccacggcctga
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integrated database retrieval system
