Trematomus bernacchii (emerald rockcod): 117482573
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Entry
117482573 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben02010
ABC transporters
tben04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117482573
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117482573
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tben02000
]
117482573
Transporters [BR:
tben02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117482573
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
Motif
Other DBs
NCBI-GeneID:
117482573
NCBI-ProteinID:
XP_033986599
LinkDB
All DBs
Position
Unknown
AA seq
2316 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTLQLLVEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNANNPCFRSPTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLEGFKELAHALKELQESRSGFKLKHFLRDNETMSNFLLRNASMSEENLLLIRDADVNLE
KVLLKGYGVHLQDLCPGRGGRRLQDFVTLADPRLAAGLQEVICSAPIGWLDAAEKLFMDN
LDFLKPVQMSVRTDPEAIRLVARVTNKLLDSLGGLAVELAGMKSWLDLRTELLFLQVNAS
SSPSALYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGSHNSSEDQEGAHYDNSSTP
YCNSLVQSLDSNPMSRMIWTALKPLLMGKILYTPDTPATQRVIHEVNRTFQELGVFRDLG
GMWDEMRPKVWRFMEDGEQMDVIRTLLKNNATARLFHAQLSGTDWTVSDVSDFLSKQASD
LRPPGEVTWRNIFNETDEAIRSISRFMECVNLDKLEPVSTEEQLVDRSMVLLEDRRFWAG
IVFPDLEPNATELPDSISYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGFTY
LQDVIEQAIVRTLTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVAII
LKSIVYEKEARLKETMRIMGLNNGILWFSWFLSSLVPLLVSAGLLVLLLKTGNLLPYSDP
GVVFLFMGSFAVVTIMQCFLLSTAFNRANLAAACGGIIYFTLYLPYVLCVAWQDYIGYGA
KVFASLLSPVAFGFGCEYFALFEEQGVGIQWSNLVSSPLEEDDYSLRTAIIMMYVDSFLY
GLLTWYIESVFPGQYGIPRPWFFLFTKSYWWGEPYVRSKVHLSQKANPEVVCMEEEPAHL
ELGVYIENLVKVYPHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPPTSG
TAYILGRDIRTELSTIRQSLGVCPQHNVLFSMLTVEEHIWFYGRLKGLSEQQVQAEVEQI
LQDTGLPHKRKSRTSALSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLLL
QYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKREGA
GRTSVSRKSSSSTSLREKEGECSSISSSDAGLGSEHESEVATIESAAPLPDVIQVSGLIQ
GHVPAARLVEDLGHELTYVLPYSAAKDGAFAELFSDLDQKLAELGISSYGVSDTTLEEIF
LKVAEDNGVDTEVPSDGRFPVRRRRRAHAFGGSDHQSCLKPLIDDDINESDGEHESKETE
GLTLSNGKGSYQVSGWALLRQQFVALMWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSL
IVPPFGVYPSLELQPWMYEDQVTFISDDAPGDANMQRLLGSLMDAPGLGTRCMDGHPIPE
APCTMGDEDWNFPDVPESVQQLFLSSNWTMDNPSPACFCSCEGKKKMLPDCPAGAGGLPP
PEMMLSATDSLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGGFSLGARSTQVLP
PANEVDDAIERVRKIFELQKGAAADRFLDSLSGFINGLDTKNNVKIWFNNKGWHSIGAFI
NVMNNGILRANLPPGRDPQLFGIRAFNHPLNLTKEQLSQVALVTTSVDVLVSICVIFAMS
FVPASFVVFLIHERVNKAKHMQFISGVQPLLYWTATFTWDMCNYVVPASLVVLIFVCFQQ
NAYVSSANLPVLALLLLLYGWSITPLMYPASFFFTIPSTAYVVLTSVNILIGINGSISTF
VMELFGNNEVGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLEW
DMVGKNLFAMAVEGAVFFIITLLIQYRLFIKPRPVSKLTTLAPLGEEDEDVARERQRIVH
GLGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTTTFKMLTGDTL
VTSGEAFLARKSILREMGEVHRNMGYCPQFDSIYELLTGREHLELYAVLRGVPEKEVCDV
AEWGIRKLGLLKYSDKSAGSYSGGNMRKLSTAMALIGAPPVVFLDEPTTGMDPKARRALW
SVIHSIIREGRSVVLTSHSMEECEALCTRMAIMVNGRFKCLGSVQHLKNRFGDGYTIILR
VGGPDADLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTSLTHIFSILAHHKEALCIE
DYSVTQTTLDQVFVNFAKDQSDDYHSKETSVRRRDVAIEVPPPLQVPPPPQLQPGGRRGG
GGAGERHVTAVMSHCDVTLWAEPPATSCQSMQDFKT
NT seq
6951 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctctacacagctgggccttctgctgtggaagaacttcacctacagacgccga
cagacgctgcagctgctggtggagatcgtctggccgctcttcatcttcttcatcctcatc
gctgtcagactcaactaccctccgtacgagcagcatgagtgtcacttccccaacaaggcg
atgccgtcagccggcacgttgccatggttacagggaatcctctgcaacgccaacaacccg
tgtttcaggagcccaacgcctggagagagtccgggggtcgtgggaaacttcaacgactcc
ataatctcccgcctgttctccgacgccaagaagattctgctctacagccagaacgacaag
aacctggagggcttcaaagaactggcccacgctctgaaggagctgcaggagagccgctca
gggttcaagctgaagcacttcctgcgagacaacgagacgatgagcaacttcctgctgagg
aacgcctcgatgtccgaggagaacttgcttctgatccgagacgccgacgtcaacctggag
aaggtgcttctgaaggggtacggcgtgcacctgcaggacctgtgtcccgggcgggggggg
cgccggctgcaagacttcgtgacgctggctgaccctcggctggcggctggtttacaggaa
gtgatctgcagcgcaccgattggctggctggacgccgccgagaaactcttcatggacaac
ctggacttcctgaagcccgtccagatgagcgttcgcaccgacccagaggccatccggctc
gttgccagggtaacaaacaaactgctggacagcctggggggtttggctgtggagctggcg
ggcatgaagtcgtggctggacctgcgcaccgagctgctcttcctccaggtgaacgcctcc
tcctcgccctccgctctgtaccaggccgtcagcaggatcgtgtgtggtcaccctgagggg
gggggcctgcagatcaagagcctcaactggtacgaagacagcaactacaaggctttgttc
gggagccacaactccagcgaggaccaggagggggcgcactacgacaactcctcaacgccg
tactgcaacagcctggtccagagtctggactccaacccgatgtcccggatgatctggacg
gctctgaagccgctgctgatggggaagatcctgtacacgcccgacacgccggccacgcag
agggtcatccacgaggtgaaccggaccttccaggagctcggtgtgttcagggacctgggc
ggcatgtgggacgaaatgagacccaaagtgtggcgcttcatggaggacggagagcagatg
gacgtcatccggactcttctgaagaacaacgccacggcccggctcttccacgctcagcta
agcggcaccgattggacggtctcggacgtctctgactttctgtctaagcaggcgtctgac
ctccgaccccccggagaggtcacctggaggaacatcttcaacgagacggacgaggccatc
cggagcatctcgcgcttcatggagtgtgtgaacctggacaagctggagccggtctccacg
gaggagcagctggtggaccgctccatggttcttctggaggaccgcaggttctgggccggc
atcgtgttcccggacctcgagcccaacgccacggagctgcccgactccatcagctacaag
atccgcatggacatcgacaacgtggagaggaccaacaagatcaaagacgcgtactgggac
cccggcccccgtgcagaccccttcgaggacatgcggtacatctggggcggcttcacgtac
ctgcaggacgtcatcgagcaggccatcgtccgaacgctgaccggcaccaaggagaagacc
ggcgtctacatccagcagatgccctacccctgctacgtggacgacatcttcctgcgggtg
atgagccgctccatgcctctcttcatgactctggcctggatgtactcggtggccatcatc
ctgaagagcatcgtgtacgagaaggaggctcgtctgaaggagaccatgaggatcatgggc
ctgaacaacggcatcctgtggttcagctggttcctcagcagcctggtgcccctgctggtc
agcgccgggctgctggtgctgctgctcaagacggggaacctgctgccctacagcgacccc
ggcgtggtcttcctgttcatgggatccttcgcggtagtgaccatcatgcagtgcttcctg
ctcagcacggcgttcaaccgcgctaacctggcggcggcgtgcggcggcatcatctacttc
acgctctacctgccctacgtgctctgcgtcgcctggcaggactacatcggctacggggcc
aaagtcttcgcgagcctcctttcccccgtggcgttcgggttcggctgtgaatacttcgcc
ttgttcgaggagcagggcgtgggcatccagtggagcaacctggtgtccagccccctggag
gaggacgactacagcctgcgcaccgccatcatcatgatgtacgtggactccttcctgtac
ggcctgctcacctggtacattgagtccgtgttcccaggtcagtacgggatccctcggccc
tggttcttcctcttcaccaagtcctactggtggggggagccctacgtcaggtccaaggtc
cacctgagccagaaggcaaacccagaagtggtgtgtatggaggaggaaccggctcacctg
gagctcggcgtctacatcgagaacctggtgaaggtttacccccacggaaagaagctggcg
gtggacggactgacgctggggttctacgagggacagatcacctccttcctgggacacaac
ggggccggcaagaccaccactatgtccatcctcacaggtctgttcccccctacctcaggg
acggcctacatcctggggcgagacatccggaccgaactgagcaccatccggcagagtctt
ggtgtctgtcctcaacacaacgtcctcttcagcatgctgacggtggaggagcacatctgg
ttctacgggcgtctgaagggtctctctgagcagcaggtccaggcggaggtggagcagatc
ctgcaggacacgggtcttcctcacaaacgcaagtcccggaccagcgctctgtcggggggc
atgcagaggaagctgtccgtggccctggccttcgtgggggggtccaaggtggtgatcctg
gacgagcccacggccggcgtggacccgtacgcccggagggggatctgggacctgctgctg
cagtaccggcaggggcgcaccatcatcctgtccacgcaccacatggacgaggcggacatc
ctgggggaccggatcgccatcatctcccacgggaaactgtgctgcgtgggctcctcgctc
tacctgaagaaccagctggggaccggatactacctgaccctggtgaagagggaaggggcg
ggcaggacctccgtcagcaggaagtcctccagcagcacctcgctcagagagaaggagggg
gagtgctcctccatcagcagcagtgacgccggcctcggcagcgaacatgagagtgaggtg
gcgactattgagagcgccgcccccttgcccgatgtcatccaggtctccgggctgatccag
ggtcacgtcccggcggctcgcttggtggaagatctgggccacgagctgacctacgtcctg
ccgtacagcgcggccaaggacggggccttcgcggagctattcagcgacctggaccagaag
ctggccgaactcggcatctccagctacggtgtgtcggacacaacgctggaggagattttc
ctcaaagtggctgaagataacggagtcgacactgaagtgccctcagacggcaggttccct
gtgcggcgccgcaggagggctcatgcgttcggaggcagcgaccatcagagctgtctgaag
ccgctcattgacgacgacatcaacgagtctgacggagaacacgagagcaaggagacggag
gggctgaccctctccaatgggaaaggctcgtatcaggtctccggctgggctctgctgagg
cagcagtttgtggctctgatgtggaaacgtttcctgtacgcccgccgctccaggaagggc
ttcttcgctcagatcgtgctcccggcagtgtttgtgtgcatcgctctggtcttcagtctc
atcgtcccgcccttcggggtttacccgagtctggagctgcagccctggatgtacgaggac
caggtgaccttcatcagtgacgatgctcctggagatgctaacatgcagaggttgttgggg
tctctgatggacgctccgggcctcgggactcgctgcatggacggacatcccatcccagag
gctccctgtacgatgggtgatgaggactggaacttcccggatgtccctgaaagcgtccag
cagctcttcctgtcctctaattggacgatggataacccgtcccccgcctgcttctgcagc
tgcgaggggaagaagaagatgctgccggactgtcctgctggggccggaggtctgcccccc
ccggagatgatgttgagcgccaccgactccctgcagaatctgacgggcagaaacatctcc
gactacctcgtcaagacctacgctcagatcatcggcaagagtttgaagaacaaagtttgg
gtgaatgaattccggtacggaggcttctcattgggcgccaggagcacgcaggtcctcccc
ccggccaatgaggtcgacgatgccatcgagagggtccgcaagatctttgagttacagaag
ggcgcggcggcggaccgtttcctcgacagtctgtcagggttcatcaacggcctcgacacc
aagaacaacgtcaagatctggttcaataataagggctggcacagcatcggggcgttcatc
aacgtgatgaacaacgggatcctgcgggccaacctgccccccggtcgagaccctcagctg
ttcgggatccgagccttcaaccaccctctgaacctgaccaaggagcagctgagccaggtg
gctctggtcaccacctcagtggacgtgctcgtctccatctgtgtgatcttcgccatgtcc
ttcgtgccggcgagcttcgtggtgtttctgatccacgagagagtcaacaaggccaagcac
atgcagttcatcagtggagtgcagcccctgctgtactggacggccaccttcacctgggac
atgtgtaactacgtggtccccgcttcgctggtcgtcctgatcttcgtgtgtttccagcag
aacgcctacgtctcgtccgccaacctgccggtgttagcactgctgctgctgctctacggg
tggtccatcacccctctcatgtatccggcctccttcttcttcacgatccccagcacggcc
tacgtggttctgaccagcgtcaacatcctgatcgggatcaacggcagcatctccaccttc
gtgatggagctgttcgggaacaacgaggtcggggggattaacgacatcctgaagaacgtc
ctgctgatcttccctcacttctgcctgggccggggtctcatcgacatggtgaagaaccag
gccatggccgacgccctcgagagattcggagagaacaggttcagatcccctctggaatgg
gacatggttgggaagaatctgttcgccatggctgtggagggagccgtgttcttcatcatc
acactcctcatccagtacaggctcttcatcaagcccaggccggtcagtaagctcaccacg
ctggctcctctgggggaggaggacgaggacgtggcgagggagagacagaggatcgtccac
ggcctcggacatggagacatcctggagctccggcagctcaccaaggtgttcaagaggaag
cagaagccggcggtggatcggctgtgtgtggggatcccccctggagagtgtttcgggctg
ctgggagtgaatggagcggggaagacgaccaccttcaagatgctgacaggagacacactg
gtgaccagcggggaggccttcctggcccggaagagcatcctgagggagatgggtgaggtc
cacaggaacatggggtactgtcctcagttcgactccatctacgagctgctgacgggccga
gagcatctggagctgtacgctgttctgagaggagtccctgagaaggaagtctgcgacgtg
gcagagtggggcatcaggaagctgggtctgctgaaatactcggacaaatctgcaggaagt
tacagcggagggaacatgaggaagctgtccacagccatggctctgatcggagcgccacct
gtggtgttcctggacgagccgaccaccggcatggaccctaaagccaggagagctctgtgg
agcgtcatccacagcatcatcagagagggacgctccgtggtgctcacctcacacagcatg
gaggagtgtgaggctctctgcaccaggatggccatcatggtgaacggcaggttcaaatgt
ctgggcagcgtgcagcacctgaagaacaggtttggggacgggtacaccatcatcctgcgg
gtggggggtccggacgcagacctgctgcccgtcatgaagttcatcgagagcgagctgagc
ggcagcaccctgaaggagaagcaccgcaacatgctgcagtaccagctgccctcctccctc
acctcgctcacacacatcttctccatcctggcccaccacaaggaggcgctgtgcatcgag
gactactcagtcacccagaccacactggaccaggtgttcgtgaactttgcgaaggaccag
agtgacgactatcactccaaagagacgtctgtgaggcggagagacgtcgccatcgaggtg
cccccccccctccaggtgccccccccccctcagctgcagcccgggggccgcagagggggg
ggcggtgcgggagagcgccatgtgaccgccgtgatgtcacactgtgatgtcactctgtgg
gcggagccaccggccacctcatgccagtcaatgcaagactttaagacctaa
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integrated database retrieval system
