Trematomus bernacchii (emerald rockcod): 117482664
Help
Entry
117482664 CDS
T09643
Symbol
sf1
Name
(RefSeq) splicing factor 1 isoform X1
KO
K13095
splicing factor 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117482664 (sf1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117482664 (sf1)
Spliceosome [BR:
tben03041
]
Complex A
Other components
Complex A specific factors
117482664 (sf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF1-HH
KH-I_KHDC4-BBP
KH_1
zf-CCHC
KH_12
zf-CCHC_3
Motif
Other DBs
NCBI-GeneID:
117482664
NCBI-ProteinID:
XP_033986738
LinkDB
All DBs
Position
Unknown
AA seq
691 aa
AA seq
DB search
MATGANATPLGKLHPSIGAKRGFEAGPGAGNGLMPTPGPPAPFPSIQAFQPPMPTAAFPQ
PHQFNPVTSFSPQAQQQPTAGGGMSKADFNLKKSRKKSRWSSETPDQKTVIPGMPTVIPP
GLTRDQERAYIVQLQIEDQTRKLRTGDLGIPVNPEDRSPSPEPIYNSEGKRLNTREYRTR
KKIEEERHSLITEMVGLNPDFKPPADYKPPATRVNDKVMIPQDEYPEINFVGLLIGPRGN
TLKNIEKECCAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMENVKKAVEQI
RNILKQGIETPEDQNDLRKMQLRELARLNGTLREDDNRILRPWQNSEPRSITNTTLCTKC
GGAGHISSDCKYTSSFAAHRATGGEPPQSAQDKARMDKEYLSLMAELGEAPVPSSGGGHS
NNHGGGPRSSGQNNNQPPPQNRPPWMNSGPSENRNYHGMHGGHGGHGGHVGHGGHGGHGG
HGGPQHYPPPMPSMGGPPMPPNPNGMPPPWMQPPPPPMGQGHGHPMGLLPPPMGMMPPPP
PPPSNQPPPPPSGPLPPWQQQAPPPPPTSSMATSTQLPWQQNTTTTSSPGTGTLPPWQQP
QQPATSGAQPPPPIGTPSMVPPPPGVQPPLPPGAPPPPPPPPPGSTGMMYAPPPPPPPMD
PSNFVTMMGMGVPGMPPFGMPPAPPPPPPQN
NT seq
2076 nt
NT seq
+upstream
nt +downstream
nt
atggctacgggcgcaaacgcaactcctttagggaagttgcaccccagtattggcgctaaa
cgaggatttgaggctgggcctggtgcggggaacgggttgatgccaacaccggggcctcct
gcaccctttccttctatacaagcttttcaaccacccatgcccactgcagcttttccgcaa
ccacatcagttcaatccggtgacaagtttttcgccccaggcccaacagcaaccaactgcg
ggaggcggaatgtccaaagcagatttcaatctgaagaaatccaggaagaagagtcgctgg
agcagcgagacacctgatcagaagacagtcattccgggcatgcccactgttattccccct
ggactgacccgcgatcaggagagagcctacatagtccaactgcagattgaagaccagact
cgtaaactgcgtacaggagacctgggaatccctgttaaccctgaggacaggtctccctct
ccagagcctatctacaacagcgagggcaagcggttaaacacacgcgagtatcgcacacgg
aagaagattgaggaggagcgtcactctctcatcactgagatggttggcctcaacccagac
ttcaaacctcctgcagattacaaacctccagccactagagtcaatgacaaagtgatgatt
ccccaagatgaataccctgaaatcaactttgttggtctacttatcgggccacgtggtaat
acactgaaaaacattgagaaggagtgctgcgccaagatcatgatccggggaaaaggctct
gtgaaggaggggaaggtcggccgaaaggacgggcaaatgctgccaggagaagatgagcct
ctgcacgccctggtcaccgccaacacaatggagaacgtcaagaaagctgtggagcagata
cgcaacattctgaagcaaggtattgagacgcctgaggatcagaacgacctacggaagatg
cagctgagggagctggccagactcaacggcacactgagggaagacgacaacaggatcctc
cgtccttggcagaactcggagcctcgcagcatcaccaacaccaccctctgtaccaagtgt
ggtggagcaggccacatctcctctgactgcaagtacaccagctcatttgctgcccacaga
gcgacaggtggagagcctccccagtcagcgcaggacaaggctcgtatggacaaggagtat
ctgtccctgatggctgagctaggagaggctccggtcccctcatcaggtggaggacactcc
aacaaccatggaggaggacctcggtcctcagggcaaaacaacaaccagccaccaccgcag
aaccggcctccctggatgaactccggtccgtcggaaaacaggaactaccacggcatgcac
ggaggtcacggaggtcacggaggtcacgtaggccatggtggccatggtggccatggtggc
catggaggaccccaacactaccctccaccaatgcccagcatgggaggccccccaatgccc
ccaaaccccaacggcatgcctcccccctggatgcagcctcccccgcctcccatgggccag
ggtcacggacatcccatgggtctgctgccacctccaatgggcatgatgccacccccacct
cctccccccagcaaccagccacctccccctccttctggacctctgccaccatggcaacag
caggctccacctccccctccaacgagcagcatggcaacaagtacgcagctaccctggcaa
cagaataccaccaccacgtccagccctggcaccggcaccctgcctccatggcagcagccc
cagcagccagcaacctccggagcccagccccccccacccataggaaccccctccatggtg
ccgcctcccccaggcgtccagcccccgttgcccccgggcgcccctccacctcccccccca
ccgcctccaggctcaactggaatgatgtacgcccccccaccaccgccgccaccaatggac
ccttccaactttgtcaccatgatggggatgggggtaccaggcatgcctccctttggcatg
cctcctgcccccccacctcctcccccccagaattaa
DBGET
integrated database retrieval system
