Trematomus bernacchii (emerald rockcod): 117483139
Help
Entry
117483139 CDS
T09643
Symbol
utp20
Name
(RefSeq) LOW QUALITY PROTEIN: small subunit processome component 20 homolog
KO
K14772
U3 small nucleolar RNA-associated protein 20
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tben03009
]
117483139 (utp20)
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
90S particles
U3 small nucleolar RNA-associated proteins
117483139 (utp20)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UTP20_N
UTP20
UTP20_C
MASE5
Motif
Other DBs
NCBI-GeneID:
117483139
NCBI-ProteinID:
XP_033987225
LinkDB
All DBs
Position
Unknown
AA seq
2819 aa
AA seq
DB search
MKIKSKSSYHKSENTYKFLTFAERLANVNIDVIHRIDRTGSYAEEVETYFSEGLTKWRDL
NLTEHFSAFLKEVSNQSQSFNLLVFHQKTIVESLKTHLAVKNSLASEPLLDLVVQLARDL
QTDFYPHFPDFFVLITSVLETKDTEVLEWAFSCLSYLYKYLWRLMVKDMTKIYSLYSTLL
EHKKEHIRKFAAESFSFLMRKVPDLDGLLNHVFSDLQQHPDKAEGAGQLLFEMCKSVRNL
FHSCSEKAFPVALRKLGPSTCPDATLPWDTVRDALDHMVQAAANHVEREHFLVLWESLQA
SVVEVLGVMEAKGEKAEQATEQLERLLFIFQTLVSHKNGAKVTKPDSVCQTVLRLVQSSS
LSPSCSRLLLQITSSLLLGENISLPRVLIQETVQKVFGSTIEQDLILEFTKEMFTMKQFE
QLFLPSMLRFTAELLCCDDPRSRHCGLDALVSLILAKAPPPTDGSMAFETYPLLFDGQTG
VLSGEESAVPELVLSLIRFPEEQKQPITDLSLPWAALMLLPHLRPIAPASVVPAVTAFLN
RLLTEIETEALGKAGLFVASQAMSCLLTLDGSAQLLSLVTVDKINSILRKFPSDLSALLL
GDLYYTRLSLSGVSEHLSHSALQELHQILCANLSSNISKIRLLTLRILSQFEAELPPQTE
GEESVEVQPVFAVCLQAELVPASVQDYREKLLHLRKLRHDLVQRSLPQGPPGSFQQVPLR
YLIAMLFVNFKPLWEAVIELLVTHARGMDNRDFWKVYYENLEMVAGIAEKELHEDSEDDD
EEEEETGVQAEPGCDVIESGDVGVLFLEQLKLTANPDERTDFLNFRILLWRCMTEFPERV
EPRCRELCPLLLRFIRNEFYTSDLLVAPTQDLRKVDDAAQEESGMAVEEEEDGDEQEAEE
GGRQQKKAPPKRAAAKQLIVHLKLFAKFTNPRSLYLESSLSDLYNQLLCHQDQQIQRVAL
ECVLTYKDANIVPYKENLERLLDDKHFKEEIVHFNISETGVVDASHRARLIPLLMRILFG
RMRSKAGSKFQGKASSASRSSIILRFLAGCQAEELGIFIDLLLEPVCHYSQGTCLAAVEK
AIADTDVAAVLPLGRQHSLLNIINVVIQKLGHLINIYLPKVLQILLCVTASVSTILDKRE
QLRAGCISPLKNLRRLGVLRIQDFLDGFDSYSFSADELDAVFAAVVWPQVCRLPTESPYS
PTPLLRLIHVWCKNARYYPLLAKQRLNHPECDILLNVFALLSAKKVSTVTIAMVMDIAES
LATTQDFVASEDETELNVNNCVFPQPKEGALITADALTQGSSLLLPHISTLLNYLSGVVR
NSDRLKKKKFRVQVAKELNILSKVSRFVSDKEQSSVLITLLLPYLHKGHNPEETEIDTLA
TLQNLLRQCVQPSDFLRPLSKLFSVIQNKLPRMALTNVFQTLSDLEPSLKYITDLATKLN
AFDSRHLDEIHFDVRLCAFQDATRRVKEMTTLDLDYIGTIMHNVFHTFEIGDMSLGDNAN
LCLSAVITQLAEIGAGEQLYKDIVQHTILDAVHKGLRSKTDSVQHEYTTVLACLVKTFPT
KKEFRDLVQLTNYHDLESDFFEHMKHIQIHRRGRALRKFAKQLTEGQVVLTPRSLQHYIM
PYAMTALLDEKMQKHEGMITASVEVVGAVCLRLTWSKYLYYLKHFIHILQTSQVEQKLAV
SLLLTVLDAFHFDHQTLSREMEAAKAREDVSAAMEADDEEQAAADESEASGDEEAMEVEG
KTDPSDVPMETDTNSGENGVVSKKAATPVAKVPAAPPPMAVSSGLPQSTEELGTLISAIH
QTVTNSVLPRLHKCLNAKIKRDDEHKAVKSKDVKDEEVARIPIAFAMVKLMQTLPPAIME
VNLPGILIKVCVVLRNRFQEVRDVARGTLVKIIETLGFRYLQYLLKEMQGLLAKGYQVHV
LTFTVYQLLTVLSPTLKSGDLDACMNMLIDIFNNELFGPVAEEKDVKGIVSKLMEARHSK
SMDSYELLARYCSKESVTKFILPLKEMLDNSASLKVCIRVGAVLRRMVLGLLVNDGMTSQ
DILLLCHGLVSQSLPLLTKRDREKSSVKPPPDPRLPPPSCLLLLPTPTRGGRKAPVSSRT
NMHILVDTGLKLLHLSLKKSKVTSSDPTALQMLDPFVLLLLDCLDSRHVKVITEALVAFT
WLLKFPLPAVEQNADQMTKQLFVLLKDYSKAGAARGENYQLVQNCFKAITILVKNIKSNQ
ISETQLQVLLGYAEEDIYDQSRQATAFGLLKAILSRKLVVPEMEELMKKVAKLSVTGNNG
GIRIHCRQIYLKYLLDYPLGKKLRGHLDFVVAQLHYEHDTGRESVLEMLAYIFQTFPKEL
LLRHCGLFFAPLALVVVNDDSARCKKMAAMAIKALLAQLDINHQNTMYSFVNTWLHAEKA
SMRRLGAQICGLFVEVEEEQFTRRLDDLLPLLEKEINPVNYDDIEEEQDEKGADRLLYSF
LTLITKLSKHCSLLELRQPHDTLTLIWGHIEAHLRYPHCWVWLTSSQLFGQLFAAHPAEQ
LVAGWRGEGGDASPQSPITAFITSGLDKKMRELALSFCHQLQSKFLDTASGEQVIKNLLF
VGKVIYLVSPESDVTPAQEEVKEEEEKEEEKGGEVEEKEEEKEEKEEDENGKEKEKEDEE
EDEEDDKDRPPSLLWLMKKLSLMAKREAAHTPKVPLKRTCVFKFLGAMAMDLGKERLGPY
LSTIITPLYRELDSTYADQDPTLKNLAQELIELLKRHVGLEKFSLAFSGVQKEFSQRRAA
RKKHRAIQAVANPDIAAKKKLKKHRNKIEAKKRKIEFLRPGYKAKRQRGNTLKNLAMVQ
NT seq
8460 nt
NT seq
+upstream
nt +downstream
nt
atgaagattaaatccaagtcttcgtatcacaaatctgagaatacctacaagtttctcact
tttgctgaaagacttgccaatgtcaacattgacgtcatccatcgtattgacaggactgga
tcttatgcagaggaagtagaaacatatttctctgaaggactgacaaaatggagagacctc
aacttgacagagcatttcagtgcatttttgaaagaggtttccaaccagagccagtcattc
aacctgttggttttccatcagaaaaccatagtggagagtctgaaaacacacttagctgtc
aagaacagtctggcctcagaaccactgctggacctggtggtgcagctggccagagacctg
cagactgacttctacccccacttccccgacttcttcgttctgatcacctccgttctggaa
accaaggacacagaagtcttggagtgggctttcagctgtctctcttacctctacaagtac
ctatggaggctaatggtgaaggacatgaccaaaatctacagtttatacagcacactgctg
gagcacaagaaagaacacatccgcaaatttgcagccgagagcttctcttttttgatgaga
aaggttccagatctcgatggcctgctgaatcatgttttctcagacctccagcagcacccc
gacaaggcggagggagcagggcaactgctgttcgaaatgtgcaaaagcgtcagaaacctg
tttcactcctgctctgaaaaggctttccctgtagctttgcgtaagctcggaccctcgacc
tgcccagacgccactctgccatgggacacagtcagggacgctctggatcacatggtccaa
gctgcggcaaatcacgttgagagagaacacttcctggtcttgtgggagtctttacaggcc
agtgtggtggaggtcctgggtgttatggaggcgaaaggagaaaaggcggagcaggcaaca
gagcagctggagaggctgctgttcattttccaaaccctggtgtcccacaagaacggagcc
aaggttaccaagccggattccgtctgccagacggtgttgcggctggtgcagagctcctct
ctctcgccttcttgttcccgtctgctcctccagatcacctcctctctgctcctcggggag
aacatctctctgcccagagttctcatccaggagacggtccagaaggtgtttggcagcaca
attgaacaagatctgatcctggagttcaccaaggagatgttcaccatgaaacagtttgaa
cagctcttccttcccagcatgcttcgcttcacagctgagttgttgtgctgtgatgatcct
cgctctcgccactgtggcctggacgcgctggtcagtctgatcctggccaaagcccctccc
cccacagacggctccatggccttcgaaacatacccactgctcttcgatggacagacagga
gtgttgagcggtgaggagtctgcggtgccggagctggtgctgtcgctgatccgattcccc
gaggagcagaagcagccaatcactgacctgtctctgccctgggccgccctgatgcttctg
cctcacctcagacccattgctccagctagtgtggtcccagctgtgactgctttcttaaac
cgcctcctgactgagattgagacggaggcactggggaaagctggtctgtttgtagccagt
caggcgatgagctgcctcctcactctggacggctctgcacagcttctctccctggtcact
gtggacaagatcaactcaatcctacggaagtttcccagtgacctgtccgccctgctgcta
ggagacctgtactacacccgcctgtcactcagcggcgtttcagagcacctttcccacagt
gcacttcaggagctccaccagatactgtgcgccaacctctcctccaacatctccaagatc
cgcctgctgactctgaggattctctctcagtttgaggcagagctccccccacagaccgag
ggtgaggagagtgtggaggtgcagccggtgttcgccgtgtgcctgcaggcggagctggtg
ccggcttcagtgcaggactacagggagaagctgctccacctcaggaagctgagacacgac
ctggtgcagcgcagcctgcctcagggcccgcccggcagcttccagcaggtgcctctgcgt
tacctcatcgcaatgctgttcgtcaacttcaagcccctgtgggaggcagttattgaactt
ctagtgacccatgccagagggatggacaacagggacttctggaaggtctactatgaaaac
ctggagatggtggcagggatcgctgaaaaagaactgcatgaggacagcgaggacgatgat
gaggaggaagaggagacgggtgttcaggccgagccaggatgtgacgtcattgagagcggg
gacgtgggggtgctgttcctagagcagctgaagttgaccgccaaccccgacgagaggacg
gacttcctcaacttccgcatcctgctgtggcgctgcatgacggagtttcctgagagagtg
gagccccgctgccgggaactgtgccccctgctgctccgcttcatcaggaatgagttttac
acctccgacctgctggtggcacccactcaggacctgaggaaggtggatgacgctgcccag
gaggagtctgggatggctgtggaggaagaggaggatggagatgagcaggaggcagaggaa
ggaggcagacaacagaagaaggctcctccaaagagagccgctgcaaaacagctgatcgtc
catctgaagttgttcgccaaattcaccaaccctcgctctctctacctggagagcagcctc
agtgatctctataaccagttgctctgccaccaggaccagcagatccagcgagtggctctg
gaatgtgttctcacatacaaggacgccaacatagtaccatacaaggaaaatctggaaagg
ctacttgacgacaaacacttcaaagaggagattgtccatttcaacatttctgagacagga
gtggtggatgcctcacacagagccaggctcatcccactgctcatgaggatcctgttcggc
cgcatgcgcagtaaagcaggcagtaagttccaggggaaggcgagctccgcctcccgctcc
tccatcatcctgcgcttcctggctggctgccaagcggaggagctggggatcttcatcgac
ctgctgctggagcccgtctgccattacagccaaggtacttgcctggctgcggtggagaaa
gccatcgctgacacagatgtggctgccgtcctgcctctgggccgacagcacagccttctg
aacatcatcaacgtagtgatccagaaactgggtcacctgatcaacatctacctgcccaaa
gtgctgcagatcctgctgtgtgtcaccgcctctgtgtccaccatcctggacaaaagggag
cagctgcgtgcggggtgcatcagtcctctgaagaacctgaggcgcctcggcgtcctgagg
atccaggactttttggacggcttcgactcctacagcttcagcgcagacgagctggatgcc
gtctttgccgctgtggtctggcctcaggtgtgtcgtctccctacagagagcccctactcc
cccacccctctgctgagactcatccatgtgtggtgcaaaaatgccaggtactacccactt
ctggctaagcagaggctgaaccatccggagtgtgacatcctcctcaacgttttcgccctc
ctctcggccaaaaaagtttccacagtgaccatcgccatggttatggacatagccgagtcc
ttagcaaccactcaagactttgtggcctcggaggatgagacggagctcaacgtcaacaac
tgtgtgttcccgcagcctaaagagggcgctctcatcacagcagacgctctaacccagggc
tccagcctgctgctgcctcacatatccaccctgctgaactacctcagcggagtcgtacgc
aactccgaccgactgaagaagaagaagttcagggttcaggtcgccaaagagctcaacatc
ctctccaaggtcagtcggtttgtcagcgacaaggagcagagctcggtgctcatcaccctg
ttgctgccctacctccacaaaggccacaatcctgaggagacagagatcgacaccctggcc
acgctgcagaacctcctgcggcagtgtgtgcagccctcagacttcctgcggccgctcagc
aagctcttctccgtcatccagaacaagctgcccagaatggccctcactaacgtcttccag
actctttcggatttggagccctcactcaagtacatcactgatttagcaacaaagctgaac
gcgttcgacagtcggcacttggacgagatccacttcgacgtgcgtctctgcgctttccaa
gacgccaccaggcgagtcaaagaaatgacgactctggacctggactacatcggcaccatc
atgcacaacgtcttccacacctttgaaatcggtgacatgtcgctgggagacaacgccaac
ctgtgtctgtctgcagtcatcacgcagctggcggagatcggcgctggagagcagctttac
aaggacatcgtgcagcacaccatcctggacgccgtgcacaaggggctccgcagcaagaca
gacagcgtgcagcatgaatacaccaccgtgctggcctgcctggtgaagacctttcccacc
aagaaagagttcagagacctggtgcagctcaccaactaccacgacctggagtctgacttc
ttcgagcacatgaagcacatccagatccaccgtcggggtcgtgccctgaggaagttcgcc
aagcagctgacggagggccaggtggtgctgacgccccgctctctccagcattacatcatg
ccgtacgccatgaccgccctgctggatgagaagatgcaaaagcatgagggcatgataaca
gcgtcggtggaggtggtgggcgcagtatgcctcaggctgacgtggtctaagtacctctac
tacctgaaacacttcatccacatcctgcagacatcgcaggtggagcagaagctggctgtc
agtttgctcctcacagtcctggatgctttccattttgaccatcagaccctcagcagagaa
atggaggctgccaaggccagagaggatgtgagtgccgcaatggaggccgatgacgaggag
caagctgcagccgacgaatcggaagcaagcggtgatgaggaggcaatggaggtagagggt
aaaaccgatccatctgatgtccccatggaaacggacaccaacagtggagaaaatggtgtc
gtctccaagaaggcagctacccctgtagccaaggtgccggcggctcccccccccatggcg
gtgtccagcgggctgccgcagagcaccgaggagctggggactctgatcagcgccatccac
cagaccgtgactaacagcgtgctgccccgcctgcacaagtgtctcaatgcaaagatcaag
cgggacgatgagcacaaggcagtgaagtcgaaggatgtaaaggatgaggaagtggccaga
ataccgatcgccttcgccatggtcaaactgatgcagacgctgccaccggccatcatggag
gtcaacctgcctggcatcctgatcaaggtgtgtgtggtgctgaggaaccgcttccaggag
gtccgtgacgtggcgagggggactctggtgaagatcatagagactttaggcttccgctac
ctgcagtacctgctcaaagagatgcaggggctcctggctaaaggctaccaggttcacgtg
ctaacattcacagtttaccagctgctgacagtcctcagtccaaccctgaagagcggagac
ctggacgcctgcatgaacatgctcatcgacatcttcaacaacgagctgttcgggcctgtg
gccgaggagaaggacgtgaaggggatcgtctccaagctgatggaggcgcgacacagcaag
agcatggactcctacgagctgctggctcgctactgcagcaaagagagcgtcaccaagttc
atattgccactaaaggagatgctggataactcagccagtctgaaggtgtgtatccgggtg
ggggccgtgctgcggaggatggtcctgggtctgctcgtcaacgatggcatgacgtctcag
gatatcttgctgctgtgccacggcctggtcagccagagtctgccgctgctcaccaagaga
gaccgagagaaatcctcagtgaagccccccccagaccccaggctgccccctcccagctgc
ctgctcctgcttccaactccaacgaggggggggcggaaggctccagtcagcagccgcacc
aacatgcacatcctggtggacaccggcctcaagctgctccacctgagtctaaagaaatcc
aaagtgacgtcctccgatcccacggctctgcagatgctggatcctttcgtcctgctgctg
ctcgactgcctcgactccaggcacgtcaaggtgatcacggaggctctggtggccttcacc
tggctgctgaagttccctctcccagcagtggagcagaacgcagaccagatgaccaagcag
ctgttcgtcctgctgaaggattactccaaggccggagcggcccgcggggagaactaccag
ctggtgcagaactgcttcaaggccattaccatactggtgaagaatatcaaaagcaaccag
atctcagagacacagctgcaagtgctgctgggatacgctgaggaggacatctacgaccag
tcccgccaggccaccgccttcggcctgctgaaggcaattctgtccaggaagctcgttgtc
ccagagatggaggagctgatgaagaaagtggccaagctttctgtcaccggcaacaacggc
gggatcagaatccactgtcgacagatctatctaaaatacctgctggactaccccctgggg
aagaagctgagggggcacctggactttgtggtggcgcagctgcactacgagcacgacacc
ggcagggagtcagtgctggagatgctggcctacatcttccagaccttcccgaaggagctg
ctgctgaggcattgcggcttgttcttcgccccgctggccctggttgtggtcaatgatgac
tcggcacgctgtaagaaaatggccgccatggccatcaaggcactgctggcccagctggac
attaaccaccagaacaccatgtactcctttgtcaacacctggctgcatgcagaaaaggcc
agcatgcggcgtctgggcgctcagatctgcggcctgttcgtggaggtggaggaggagcag
ttcacccgccgcctggacgacctgcttcctctgctggagaaggagataaaccccgtcaac
tacgatgacatcgaggaggagcaggacgagaagggggcggaccggctgctctacagtttc
ctcaccctcatcaccaaactgagcaaacactgcagcctgctggagctcagacagcctcac
gacacactcactcttatctggggtcacattgaagcccacctgcggtaccctcactgctgg
gtgtggctgacctcctcgcagctctttggtcagctgtttgcagcccatccggcggagcag
ctggtggctgggtggagaggagagggtggagacgcttcacctcagtccccaattactgct
ttcatcaccagcgggctggacaagaagatgagagagctggcgttgtctttctgccatcag
ctacagtccaagttcctggacaccgcctcaggagagcaggtgatcaagaacctgctgttc
gtcggcaaggtgatctacctcgtttcccccgagtccgacgtcacgcccgctcaggaagaa
gtgaaagaggaagaggagaaggaagaagagaaagggggggaggtggaggagaaggaagaa
gagaaagaggagaaggaagaagatgaaaatggcaaggagaaggaaaaggaagatgaggaa
gaagacgaagaagacgataaggaccggcctccttccctgctgtggctgatgaagaagctg
tcgctgatggcaaagagagaggcggcacacactcccaaagttcctctgaagagaacgtgt
gtgtttaagttcctgggagcgatggccatggacctggggaaggagcgactcggcccctat
ctgagcaccatcatcactcctctgtacagggagctggacagcacctacgcagaccaagac
cccaccttgaagaacctggctcaggagctgatcgagctgctgaagagacacgtggggctg
gagaagttctctctggccttctctggcgtccagaaggagttttcacagaggagagccgcg
cgcaaaaaacacagagccattcaggcggtggctaacccagacatcgcagccaagaagaaa
ctcaagaagcacaggaacaaaatcgaagccaagaagaggaagatcgagttcctccggccc
ggttataaagccaagaggcagcggggcaacacgctcaaaaacctggccatggtgcagtga
DBGET
integrated database retrieval system
