Trematomus bernacchii (emerald rockcod): 117483166
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Entry
117483166 CDS
T09643
Symbol
pcdh10a
Name
(RefSeq) protocadherin-10a isoform X1
KO
K16499
protocadherin delta 2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117483166 (pcdh10a)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117483166 (pcdh10a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
DUF4621
Motif
Other DBs
NCBI-GeneID:
117483166
NCBI-ProteinID:
XP_033987271
LinkDB
All DBs
Position
Unknown
AA seq
1052 aa
AA seq
DB search
MIWLILLLSILHGAVSQLHYSVPEEQEPGSVVGNIAEDLGLDITKLSARRFQTVPSSRTP
YLEVNLENGALVVKEKIDREEICKQTTPCLLHLEVFLENPLELFRVEIEVMDINDNPPTF
PETDISVEISESAIPGTRFPVENAFDPDVGTNALSTYAITNNNYFYLDVQTQSDGNKFAE
LVLEKSLDREQQAVHRYVLTAVDGGIPQRTGTALLVVKVLDSNDNAPTFDQSVYSVNLRE
NSPVGTLIIQLNATDVDEGQNGEIVYSFSSHNAPRIKDLFNIDARTGRIEVAGEVDYEES
STHQIYVQAKDMGANAVPAHCKVLVKLVDVNDNTPEIGFSTVTESVSEQDAPGTVIALFS
VSDRDSGENGHMSCEVLGDVPFKLKSSFKNYYTIVTDGPLDRENTDSYTITVVAKDKGQP
SLATSKSIKVHVSDENDNAPRFTQAVYDVYVTENNVPGAFIHAVSAMDPDIGQNALITYS
ILECEIQGMSVDTYVSINQDTGYLYALRSFDYELLKEFSFMVHAKDGGAAELFSNATVNV
IIVDQNDNAPTVIAPIGKNGTAKEHLPRSAEPGYLVTRIMAMDSDDGENARLSYSILRGN
EMGMFRMDWRTGELRTARRISPKRDPQGYYDLLIEVRDHGQPPLSSSASVSVILVDSVVE
GRSGDRGSASKAKETSLDLTLILIIALGSVSFIFLLAMIVLAVRCQKDKKLDLYTCLLAG
ECCMCCGSCCSRQARGRKQKKLSKSDIMLVQSTNVTSGVGPVGQVPVEESGVGGVGGGFG
SHHQNQNSYCYQVCLTPESAKTDLMFLKPCSPSRSTDTDHTNPCGAIVTGYSDQQPDIIS
NGSILSNETKHQRAELSYLVDRPRRVNSSAFQEADIVSSKDSGHGDSEQGDSDHDATNRG
HSAGADLFSNCTEECKALGHSDRCWMPSFVPSDGRQGPDYRSNLHVPGMDATLPDTEVPS
SVNLPDQLTMTSSTASSNDRSFSTFGKDGQRSQSHQSLHHHLHQQQPQYSSSTLERKEYD
RGTLPYKPTFLCEYQYENSLGPYDFSLVQNRY
NT seq
3159 nt
NT seq
+upstream
nt +downstream
nt
atgatttggttaatactccttctctccatcctgcatggagctgtttctcagctacactac
tccgtgccagaggagcaggagcctggctccgtggttgggaatattgcagaggatttgggg
ctggacattaccaaactttccgctcgccgtttccagacggtgcccagttcgcggacacct
tatctggaggtgaacttagagaacggagcgcttgtggtgaaggagaaaatcgaccgagaa
gaaatctgcaagcaaaccaccccgtgcctattgcacctggaggtgtttctggagaacccg
ctggagctgtttcgcgttgaaattgaagtgatggatatcaacgacaatccacccaccttc
cctgagacggacatttccgtggaaatatcggagagtgccatccccgggacccgtttcccg
gtagagaacgctttcgacccggacgtgggcacgaacgctctcagcacatatgccatcacg
aacaataactatttttaccttgacgtgcagacacagagtgacgggaacaagttcgcggag
ctggtgctagagaagtctctggaccgggagcagcaggctgtgcaccgctacgtgctgacg
gctgtggatgggggcatcccgcagcgcaccgggacggctctcctggtcgttaaagtgctg
gactcgaacgataacgcgcccacctttgaccagtcagtgtactctgtgaatctgcgggaa
aactctcccgtgggcactctgattatccagctcaacgccacagatgttgacgagggacaa
aacggcgaaatagtttattctttcagcagccacaacgccccgcggataaaggacttattc
aacattgacgccaggacaggtaggatagaggtggcgggagaggtggactacgaggagagc
agcacgcaccaaatttacgtccaggctaaagacatgggggctaatgcggtccccgcgcac
tgcaaagtgctggtgaaactcgtggacgtgaacgacaacacaccggagattggtttcagc
actgtgaccgagtccgtgagcgagcaggacgccccgggcaccgtcatcgcactttttagc
gtctcagaccgggactccggcgaaaatggacacatgagctgcgaggttttgggagacgtt
cctttcaagctcaaatcctcctttaagaactactacactatcgtgacagacggaccgctg
gacagagagaacacagactcctacaccatcaccgtggtggccaaagataaggggcagccg
tcgctcgccaccagcaagtccatcaaagtgcacgtctccgatgagaacgacaacgcgccc
cgctttacgcaggctgtttatgatgtgtatgtgactgagaataacgtacccggggctttc
atccacgctgtgagtgccatggaccctgatataggacaaaacgctctcattacctactcc
atattggagtgtgaaatacagggcatgtccgtggacacgtatgtatccataaaccaggac
accggctatctttacgcgctgcgctcttttgactacgagctgctgaaggagtttagtttc
atggtgcatgctaaagacggtggcgctgccgagctcttctctaacgccactgtcaatgtg
atcatagtggaccagaatgacaacgcacccactgtcatagcccccatcggtaagaacggc
acagccaaagagcacctgccgcgctctgctgagcccgggtacctggtgacgcgcatcatg
gctatggattcggatgatggcgaaaacgcacggctgtcctacagcattctgcggggcaac
gagatggggatgttccgcatggactggaggacgggggagctgaggacagcccgcaggatc
tcccccaagagggacccgcagggctactacgaccttctgatcgaggtgagagaccacggg
cagccccctctctcctcttctgcgagtgtgagtgtaatattagtggacagcgtggtggag
ggccgcagtggggaccgcggctcggcctccaaggcgaaggagacctcccttgacctcacc
ctcatcctcatcattgccctgggctctgtgtcattcatcttcctcctggccatgatcgtg
ctggccgtgcgctgccaaaaggacaagaagctcgacctgtacacgtgcctgctagccgga
gagtgctgcatgtgctgtggctcgtgctgcagcaggcaggcccgcggccggaagcagaag
aagctgagcaaatccgacatcatgttggtccagagcaccaacgtgacgtcaggggtcggg
cccgtggggcaggtgcccgtggaggagtctggtgtgggcggcgtgggagggggcttcggc
tcccaccaccagaaccagaactcctactgctaccaggtgtgtctgacaccggagtcagcc
aaaacggatctgatgttcctgaaaccgtgcagcccctcccgcagcacggatacggatcac
accaacccctgcggcgccatagtgacgggttacagtgaccagcagccggacatcatatcc
aacggcagcatcctctctaatgagacgaaacaccaacgagcagaactcagctacttggtg
gaccggcccagacgtgtcaacagctctgcattccaagaggcagacatagtcagctccaaa
gacagcgggcatggcgacagcgaacagggcgacagtgaccatgatgccaccaaccggggt
cattctgccggcgctgacctgttctccaactgcacggaggagtgcaaggccctgggtcac
tcggaccgctgctggatgccctcctttgtgccgtccgacgggcgccaggggccggactac
cgcagcaacctgcacgtccccggcatggacgccacgttgcccgacactgaggtaccctcc
tccgtcaacctccccgatcaactcaccatgacctcgtccaccgcctcgtccaacgatagg
tcattctccacctttggcaaggacggtcaaaggtcacagtcacaccaaagccttcaccat
cacctccatcagcaacagccgcagtacagctccagcacgctagagaggaaagagtatgat
agggggaccctaccatacaaacccacctttctctgtgagtatcagtatgaaaattccctg
ggaccctatgactttagtctggtccagaacagatactaa
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