Trematomus bernacchii (emerald rockcod): 117483224
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Entry
117483224 CDS
T09643
Symbol
trim24
Name
(RefSeq) transcription intermediary factor 1-alpha isoform X1
KO
K08881
tripartite motif-containing protein 24 [EC:
2.3.2.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
tben01001
]
117483224 (trim24)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117483224 (trim24)
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117483224 (trim24)
Protein kinases [BR:
tben01001
]
Serine/threonine kinases: Other
TIF1 family [OT]
117483224 (trim24)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
TRIM/RBCC proteins
117483224 (trim24)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
zf-B_box
ANCHR-like_BBOX
PHD
zf-RING_UBOX
zf-RING_5
zf-C3HC4_2
PHD-1st_NSD
zf-C3HC4
zf-RING_2
DUF5054
DUF7615
FemAB_like
Motif
Other DBs
NCBI-GeneID:
117483224
NCBI-ProteinID:
XP_033987349
LinkDB
All DBs
Position
Unknown
AA seq
1083 aa
AA seq
DB search
MDESAEKVVNDDIVIIVENEAESLPAEEERLKQQGTFGLMDTCPICKLSFHNREPKLLPC
LHSFCKRCLPAPFRSADPRRDTQGQLDNNKSLGAIRCPVCRQECWEMDMLDNFFVKDSAE
MPSSTVEKSSQLCMSCDDNTEATGYCVECVEFLCVTCIEAHQRVKFTRDHTIRQKEEMSP
EAVVMSTQKPVFCDVHKQEPLKLFCETCDRLTCRDCQLLKHKDHNYQFLEDAYRNHRQYL
ENMTQQLQDKRRTIAEVSSCISNGLQQVDENRKSVTNEIKKSICGLIMEINRKGKILVNQ
LEALTKDHELGLKKQQDDVNSLSRHLDHVINFTKWATASHSGTALLYCKRLILFQIHYLM
RASCNPSIVPQSSVRFQCRSGFWATNVDLGSLVVERGPGTRPPNPTLNHPAGPRAEAPPG
GMSAIAQQRQSTLAQLQMQTSVVPLSKVDKISQQPQRQPPPNHWSWYQNVRLPGPPGPPP
PTRPIHGGSSPSQGPPSMAQPGRRYGSSQPSTRSPTSSMLHNTGFPSHQVSAQSLRELIH
GSTYPPKPMEMLQGASRYPPPQSAGAAAHMSHHQRGLAEASFLKRSEAGGSVPSITISIP
KPSFAPSQASATMDKTSTFNYIAAVQARQNSPMAKPSSSDRSTGTTPWKQTAEAPAAPPS
KRRRRASPGPVIVIKDEPEDEDEVSFVQSSLPDSSTGAQSIPRPQIKVSVPVSLPASESG
KEQHPAAEPESEKRAEPEEDPNEDWCAVCQNGGELLCCDKCPKVFHLACHIPALNESPSG
EWFCSLCRDLAAPEMEYDCKGKDDPVSEGFPPAERRRCERLLLRLFCNDFSTDFQQPATP
SETRRYKELIKTPMDLSIVKKKLESKAQGGEGYSGPDGFVADVRLIFLNCAKYYKSVQVT
SDVGSAGLYLEDYFEEQVKLVYPERLFPGGREEQMIPPLEDEIEEEEEMMGEGMAPIEDD
KPISPAGEGIPPVEEDSTVEETTVPVEENKSETEEKEMETEMETDVTAAEEGDMPPSEEA
KQDEEIPVKEAQSSPAADSETKDKSAPSSLEKESSDLPTDTTEDPPDTQTEESAPADTAK
EGE
NT seq
3252 nt
NT seq
+upstream
nt +downstream
nt
atggatgagagtgccgaaaaggttgtcaacgacgacattgtcattatcgtggaaaacgag
gcagaaagtttgccagccgaggaagagaggctgaaacagcaaggcaccttcgggctcatg
gatacctgccccatctgcaagttgagcttccacaacagagagcccaaactactaccatgt
ctgcactctttctgcaagaggtgtctccctgcccccttcaggagtgctgatccaagacgt
gatacgcaaggtcaactcgacaacaacaaatcattgggtgccatacgatgtccagtatgc
agacaggaatgctgggagatggacatgttggacaatttctttgtcaaagattctgctgag
atgccgagcagcaccgtggagaaatccagccagttgtgtatgagctgcgacgacaacaca
gaggcaacaggttactgcgtggagtgcgtggagtttctgtgtgtgacatgtatcgaggcg
caccaaagggtcaagttcaccagggatcacaccatacgccagaaagaggagatgtctcca
gaggcagtagttatgtccacacagaagcccgtgttttgtgatgtccacaagcaggaaccg
ctgaagctgttctgtgagacatgtgaccggctcacctgtcgggactgtcagctgctcaag
cacaaggatcacaattaccagtttttggaggatgcgtacaggaaccacaggcagtatctg
gagaacatgacgcagcagttgcaagataaaagaaggaccatcgcggaagtgtccagctgt
atcagcaacggactccagcaagttgatgagaaccggaagtcggtcactaatgaaataaag
aagtccatttgtggcctgatcatggagatcaacaggaaggggaagattctggttaaccag
cttgaggctctgactaaggatcacgagctgggtttgaaaaagcagcaagacgacgtcaac
tccctgagcaggcacctggatcatgtgatcaactttaccaaatgggccacggccagccac
agtggaacagccctgctgtactgcaagagactgatcctctttcagatccattacctaatg
agagcgagctgtaatccttcaatcgtccctcagagttctgttcgctttcagtgtcgctct
ggtttctgggccaccaatgtagaccttggttctctggttgtagaaaggggccctggcacc
cggccgcccaaccccaccctcaaccaccctgcaggtcccagagcagaagccccccccgga
ggtatgtccgccatagctcagcagcgacagagcacgctggctcagctccagatgcagaca
tctgttgttcctctgtccaaggtggacaagatttcacagcagccccaaaggcaacccccc
cctaaccactggtcctggtaccaaaatgtcagactcccagggccccccggtcccccaccc
ccaaccagacccatccacggagggtcctccccctcccaaggccccccaagcatggcacag
ccaggccgcagatacggaagctcccagcccagcactagaagccccacctcctccatgctc
cacaacaccggcttcccctcccatcaggtcagtgcgcagtctctgagagagctgatccat
ggctccacctatcctcctaaacctatggagatgttgcagggtgcgtcccgctacccaccg
cctcagtctgccggagcagctgcacacatgtcccaccatcagcggggcctagcggaggct
tccttcctgaagaggagtgaggcaggtggatccgtcccctccatcaccatctctatcccc
aaacccagcttcgctccaagtcaagcttcagcaactatggacaaaacgagcaccttcaat
tacatagcagcagttcaagcaaggcaaaactccccaatggccaaaccgtcttcttcagac
agaagcacagggacgactccctggaagcagactgcggaggctccagctgctccaccatcc
aagagaagaagaagagcgtcaccggggccagtcatcgtcatcaaggacgaaccagaggac
gaggatgaagtcagcttcgtgcagtccagcctgccggacagcagcaccggggctcagtcg
attcctcggccgcagatcaaggtgtccgtcccggtctccctccctgcgtcagagtctggg
aaagagcagcatcccgcagcagagccagagtctgagaagagggcggagccggaggaagat
cccaacgaggactggtgcgccgtctgtcagaacggaggggagctgctctgctgcgacaaa
tgtcccaaagtctttcacctggcctgccacatccccgctctgaacgagtccccgagcggg
gagtggttctgttcgctctgcagagacctcgccgctcctgagatggagtacgactgcaag
ggcaaagacgaccccgtctctgagggattcccgcccgcagaaagaaggaggtgtgagagg
ctgctactgcgtctgttctgcaatgacttcagcactgacttccagcagcctgctactcca
tcagagacaaggaggtacaaggagctgattaagaccccgatggatttgtcgatagtgaag
aagaaactggagtccaaggcgcagggaggtgaaggctatagcggtccggacgggtttgtc
gcagatgtccggctcatatttttaaactgtgcgaaatactacaagtctgtacaggtgacc
tcagatgtggggagtgcaggtctgtacctggaggactactttgaggagcaggtgaaactc
gtctacccagaaaggctcttccccggagggagggaagagcagatgatcccccctttggag
gacgagattgaggaagaggaagagatgatgggggaaggcatggctcccattgaagacgat
aaaccgataagtcctgcaggagaaggaatcccccctgtggaggaggactcgactgtggaa
gaaacgacagttccagttgaggaaaataagtctgaaacggaggagaaggaaatggagacg
gaaatggagacagatgtaacggcagctgaggagggagacatgcctccatcagaggaggca
aagcaggacgaggagatacctgtgaaggaggcacagagctctccagctgcagatagtgaa
acaaaagacaagtcagctcccagctccctggaaaaggagagctctgacctccctacagac
acaactgaggatcccccggacacccagacggaggagtcggctcctgcagacacagccaaa
gagggggagtga
DBGET
integrated database retrieval system
