Trematomus bernacchii (emerald rockcod): 117483244
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Entry
117483244 CDS
T09643
Symbol
cnot4b
Name
(RefSeq) LOW QUALITY PROTEIN: CCR4-NOT transcription complex subunit 4
KO
K10643
CCR4-NOT transcription complex subunit 4 [EC:
2.3.2.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
117483244 (cnot4b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117483244 (cnot4b)
03019 Messenger RNA biogenesis [BR:
tben03019
]
117483244 (cnot4b)
04121 Ubiquitin system [BR:
tben04121
]
117483244 (cnot4b)
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117483244 (cnot4b)
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
117483244 (cnot4b)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
117483244 (cnot4b)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
117483244 (cnot4b)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117483244 (cnot4b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
zf-RING_4
RRM_1
zf-C3HC4_3
zf-UDP
zf-C3HC4_2
Nup35_RRM_2
DZR_2
zf-C3HC4
Motif
Other DBs
NCBI-GeneID:
117483244
NCBI-ProteinID:
XP_033987381
LinkDB
All DBs
Position
Unknown
AA seq
774 aa
AA seq
DB search
MSRHPCGKDDMMECPLCMEPLEIDDVNFFPCTCGYQICRFCWHRIRTDENGLCPACRKPY
PEDPAVYKPLSQEELQRIKNEKKQKQTEKKQKITENRKHLASVRVVQRNLVFVVGLSQRL
ADPEVLKRLEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYLRSEDALRAIQCVNNVV
VDSRTLKASLGTTKYCSYFLKSMQCPKPDCMYLHELGDEAASFTKEEMQAGKHQEYEQKL
LQDLSKNNPTFLQTPAVPGDKPKGKANSLQRSNSSSKDGRMTNGLSSEHRRSPTLDGSDS
EHLSPEGPEPDLSPDPVPALCPFSSHHELASPRNKLTDISIGNGETSQLLHSSDSPSPPP
GLSKPGLMVPLSVTGHTPRSPFEAAAVESQSLFSDNSNFRHPNPLPSGMSGFPTPPHSNA
EWPTTPEPHSLFTSDTMPVSSSTDWQAAFGFGSSKQQQEDDLGFDPFDITRRALADLIEK
ELSVEDSFSPXPHTEPSPPPLHRGPFPNPLPHPHHFPHHQHPHRGGYTTFGFPTSSSSSS
SSSSSASCGSWMGPTSSRRNFVPLNHTNSLTTSTSHSSFLDSTGLLGHHSTGLGGIPIAE
SSSCAESIHVKQWQDGLRALLPNININFGGQPNSSSSSSSSSSSLSSVNHTGPPGLFNSV
PHSRSWESPPRWMDPAIITGLPPGNSVDSLQDDNPPHWLKSLQTLTENDPPXRPAPPHTT
APTGASPPPHRASWAHFSTPSTHFHSPPPGFQTAFRPPTQLQADLLQSADIDRH
NT seq
2325 nt
NT seq
+upstream
nt +downstream
nt
atgtcccggcacccttgtggaaaggacgacatgatggagtgccctctgtgcatggaacct
ctggagatcgatgatgtcaacttctttccctgcacctgtggataccagatctgtcgcttc
tgctggcatcgaatcaggaccgacgagaacgggctctgtcctgcctgcagaaagccgtac
ccagaggaccctgcagtgtacaagccgctgtcacaggaggagctgcagaggataaagaac
gagaagaagcagaagcagacggagaagaagcagaagatcacagagaacaggaagcatctg
gccagcgtccgagtggtccagaggaacctggtgtttgtagtggggctgtcccagaggctg
gctgaccccgaggttctaaagagactagaatactttgggaaattcgggaagattcacaaa
gtggtgatcaacaacagcacatcatacgctggctcccaggggcccagtgccagtgcctat
gtcacatatcttcgttctgaagacgctctcagagcaatccagtgtgtcaacaatgtggtg
gtggacagcagaacacttaaggcttctttaggaacaacaaaatactgcagttacttttta
aagagcatgcagtgccccaaaccagactgcatgtatctccacgagctgggggacgaggct
gccagttttactaaagaggagatgcaggcgggaaagcatcaggagtatgagcagaaactt
cttcaagacctctccaaaaacaaccccaccttcctgcagacccccgctgtgccaggggac
aaacccaagggcaaggccaactctttacagaggtccaacagctccagtaaagacgggagg
atgaccaacgggctgtcctcagagcacaggaggagccccactctagatggctccgactct
gaacacctgagccccgaggggcccgaacctgatctcagccctgaccctgtcccggccctc
tgccccttctcctcacaccacgagcttgctagccccagaaacaaactgacagacatcagt
ataggcaacggtgaaacctcacaactgctccacagcagtgactctccgtcgcccccccct
ggcctcagtaagccggggctgatggtccccctcagcgtgacgggacacacgcctcgctcc
cccttcgaggcggcggctgtagagtcccagtctctgttctcggacaacagcaacttcagg
catcccaaccccctgcccagcggcatgagcggcttccccacccccccccacagcaacgcc
gagtggcccaccacccccgagccgcacagcctcttcacttcagacaccatgccggtgtcc
tcctccacagactggcaggcggcgtttggcttcggctcgtccaaacagcagcaggaggac
gaccttggcttcgaccccttcgacatcacgcgccgggctctggctgacctcatcgagaag
gagctctccgtggaggacagcttcagccccnncccccacacagaaccctcgccccccccg
ctacacagaggccccttccccaaccccctcccacatcctcaccacttcccccatcatcaa
caccctcacaggggaggctacaccaccttcggcttccccacatcatcatcgtcttcatcc
tcctcctcctcctctgcgtcctgtggatcctggatgggccccacctcctctcgcagaaac
tttgtgcctttgaaccacacaaacagtctaaccacgtccacctcacacagcagcttcctg
gactccacagggctgctgggacatcacagcactgggctcggaggaatccccatcgcagag
agcagcagctgtgcagagagcatacatgtgaaacagtggcaggacggcctcagagcgctg
ttacccaacatcaacatcaactttggaggacagcccaactcctcttcttcatcatcctcc
tcctcctcctccttatccagcgtcaaccacacggggccaccgggcctcttcaacagtgtt
cctcacagccgctcctgggagagcccccccagatggatggaccccgccatcatcacagga
ctcccccccggcaacagtgtagactctcttcaggacgacaaccccccccactggctcaag
tccctgcagacgctcacagagaacgatccccccnnccgcccagctccgcctcacacaacg
gctcctacgggggccagcccccccccccacagagccagctgggcacacttctccaccccc
agcacccacttccactcccccccacccggcttccagacagccttcagaccccccactcag
ttgcaggcagacctgctacagagcgccgatatcgaccgccattag
DBGET
integrated database retrieval system
