Trematomus bernacchii (emerald rockcod): 117484081
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Entry
117484081 CDS
T09643
Symbol
shrprbck1r
Name
(RefSeq) ranBP-type and C3HC4-type zinc finger-containing protein 1
KO
K10630
RanBP-type and C3HC4-type zinc finger-containing protein 1 [EC:
2.3.2.31
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04217
Necroptosis
tben04621
NOD-like receptor signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09143 Cell growth and death
04217 Necroptosis
117484081 (shrprbck1r)
09150 Organismal Systems
09151 Immune system
04621 NOD-like receptor signaling pathway
117484081 (shrprbck1r)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tben04121
]
117484081 (shrprbck1r)
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.31 RBR-type E3 ubiquitin transferase
117484081 (shrprbck1r)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
RBR proteins
117484081 (shrprbck1r)
Multi subunit type E3
LUBAC complex
117484081 (shrprbck1r)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Sharpin_PH
Zn_ribbon_RanBP
zf-RING_2
zf-RING_5
IBR_1
ubiquitin
Motif
Other DBs
NCBI-GeneID:
117484081
NCBI-ProteinID:
XP_033988405
LinkDB
All DBs
Position
Unknown
AA seq
725 aa
AA seq
DB search
MSLTSGGWAPGFTQDQQTQGQTPALQGLHAGAQHPQPGCHTVLASVRVSVCHSGIRPLCL
PGAGDVSLRLQLSMDPGKSGEFRLSLQQESGGVGRSVTITEFDLRSVNYEVKSPKCHELS
LAAPPHDRISFNFRCEVEAQEWATVVLSSLRETHRVAPQHYSPPRPPDALQLEKTTALQR
TEDTCLELTRAIEAGDMQSASLCAATLARQHAALKIQPTPRDAEDNEINLVVAVEDSSSS
CCVTVKVFPHMTTAALKQQMFLEYGFHPRVQRWVIGQCLCSDQRSLASYGVRQNDDSAFL
FLLSARHARLSLQALQQDQESALLLTPLSLPLLTPPSMPPPTPPLNATSANDPSSLDRRP
YTTLPARLHSSSSSSTGGSERGNIREIRDLANMEMPQLNRALTPNAASTQGWACPSCTYI
NKPTRPGCEICSTNRPERYVVPGGYRPDDLELRRIQQEKEAVRQYQQAREAERRENFARL
VLLDGQELLPNPEPVDCRICYVDLKRGEGVLLRECLHCFCRECLRSVIMLSEEPEVACPY
RDDTYSCTCSLQEREIRALVPAEEYERWLQRGLSVAESRCEGSYHCATPDCAGWCVYEDT
VNVFHCPVCTKHNCLICKSIHEGMNCKQYQDDLAARAINDSAARRTTHLLKTLVQSGEAM
HCPQCGIIVQKRDGCDWLRCTVCHSEICWVTRGPRWGPGGPGDTSGGCRCNVDNQKCHPK
CQNCH
NT seq
2178 nt
NT seq
+upstream
nt +downstream
nt
atgtctctgacttcaggcggttgggcaccaggttttacgcaggaccaacagacccagggc
cagacccccgccctccagggtctccatgccggggcccagcaccctcagcccggttgccac
accgtcctcgcgtcggtccgggtgtcggtgtgtcactccgggatccggcccctgtgtctc
cccggggcaggagacgtgtctctccgcctgcagctcagtatggacccggggaagtccggg
gaattccggctgtcgctccagcaggagagcgggggggtcggccgcagcgtgaccatcaca
gagtttgatctgaggagcgtgaactacgaggtgaagtcaccaaagtgccacgagctgagt
ctggcggcgcctcctcacgaccgcatcagcttcaacttccgctgcgaggtggaggcgcag
gagtgggccacggtcgtgctgtcatcactgagggagacgcacagagtcgcccctcaacac
tacagtccaccgcgcccccccgatgcgctccaacttgaaaaaacaacagccttgcaacga
acagaggacacctgcctagagctgactcgagccatagaggcaggcgacatgcagtctgcg
tcgctctgcgctgcgacgctcgcccgacaacacgccgcgctgaagatccagccgaccccc
cgagacgctgaggacaatgaaatcaacttggtcgttgctgttgaggattcttcttcgtcg
tgttgtgtcactgtgaaggttttcccacacatgacgacggctgcactgaaacagcagatg
ttcctggagtacggcttccaccctcgggtgcagcgctgggtgatcggtcagtgtctgtgc
agcgaccagcgctccctggcctcgtacggggtccgtcagaacgacgactcggccttcctg
ttcctcctgtccgcccgacacgctcgcctctccctccaggccctgcagcaggaccaagag
agtgctctgctcctcacccctctctctctgcctctcctcactcctccctctatgcctccc
cccacccccccgctgaacgctacctctgctaacgacccctcctctctggaccggaggccg
tacaccaccctgcctgcgaggctccacagcagcagcagcagcagcacgggtgggtctgag
agagggaacatccgtgagatcagagatctagccaacatggagatgcctcaactcaacaga
gctctgacccccaacgcagcctccacacagggttgggcgtgtccgtcctgcacctacatc
aacaaacccacgcgtccgggctgtgagatctgcagcaccaaccgccctgagagatacgtg
gtgccgggggggtaccggcccgacgacctggagctcagacgcatccagcaggagaaggag
gcggtcagacagtaccagcaggcccgggaagcggagcgcagagagaacttcgcccggctg
gtgctgctggacggacaggagctgctgccgaaccccgagcccgtggactgcaggatctgt
tatgtggacctgaagagaggggagggggtcctgctgagggagtgtctgcactgcttctgc
agagagtgcctgcgttcagtcatcatgctgagtgaggagccggaggtggcgtgtccctac
agagacgacacgtactcctgtacctgctccctgcaggagagggagatcagagccttggtg
ccggcagaggagtacgagcgctggctgcagagaggtctgtcggtggcagagtctcggtgt
gagggcagctatcactgcgccacccccgactgtgcaggctggtgtgtgtacgaggacacg
gtcaacgtcttccactgccccgtctgcaccaaacacaactgcctcatctgcaagtctatc
cacgagggaatgaactgtaagcaataccaggatgacctcgcagcgcgcgctataaatgac
tctgcagccaggaggacgacacacctactgaagaccctggtgcagtcaggcgaggccatg
cactgtccgcagtgtggcatcatcgtgcagaagagggatggatgtgattggctgcgctgc
accgtctgtcactctgagatctgctgggtgaccagagggcctcgctgggggccggggggt
cctggagacaccagcgggggatgtcgctgcaacgtcgacaatcagaagtgtcatcctaaa
tgtcagaactgccactga
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integrated database retrieval system
