Trematomus bernacchii (emerald rockcod): 117484426
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Entry
117484426 CDS
T09643
Name
(RefSeq) transcription factor Sox-8-like
KO
K09270
transcription factor SOX7/8/10/18 (SOX group E/F)
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117484426
Transcription factors [BR:
tben03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG SOX
117484426
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HMG_box
Sox_N
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117484426
NCBI-ProteinID:
XP_033988783
LinkDB
All DBs
Position
Unknown
AA seq
444 aa
AA seq
DB search
MTKEKSLTDIPRSPAGSDSPLSKHGSDSESPTSPAGSEAPEPARKITHEPESSVKADRFP
ACIRDAVSQVLKGYDWSLLPVPPMGERALKSQPHVKRPMNAFMVWAQAARRKLADQYPHL
HNAELSKTLGKLWRLLSETEKRPFVQEAERLRMQHKKDYPDYKYQPRRRKSTKPGQGDGR
PGLVLQNQQQGPYKTEPGDEYHQYHTDKTGQSHGPPTPPTTPKTDLHMGNKHEGQRPVDT
STSTTGGRQNIDFSIVDISELSPDVISTIEAFDVNEFDQYLPPNGSTLLTPTDSTTHGHN
TFLLPSLHPHILARTPKSGTASALLCRENPRLHEDTKPQIKTEQMSPDHYSCSSTPPQSD
YTSFSSGSSSNTHQSDYSDLQGSGFYSSAFSGYPAAGLYQYPYFHSSRRPYVSPLINSLA
LAPPPHSPPPSVWEQPVYTTLSRP
NT seq
1335 nt
NT seq
+upstream
nt +downstream
nt
atgacaaaagagaagtcattgacagatattcctcgcagtccagcaggcagcgacagccct
ttatccaagcatggatcagattcagagtctccaacctctccagctgggtcagaggcacca
gagccagcgcgcaaaattacgcacgaaccggagagcagcgtgaaggctgatcgcttcccc
gcgtgcatccgtgacgcggtgtcgcaggtgctgaaggggtacgactggtctctgctgccc
gtaccgcctatgggggagcgcgcgctgaagagccagcctcacgtgaagcggccgatgaac
gccttcatggtttgggctcaggccgcgaggaggaagctggcggatcaatatcctcacctg
cacaacgcggagctcagcaagacgctgggcaaattgtggagactcctctctgaaacagag
aagcgtcccttcgttcaagaggctgagaggctgaggatgcaacacaagaaagattatccg
gactacaagtaccagcctcggagacgcaagagcaccaaaccgggtcagggggacggtaga
cctggactggtcctgcagaatcagcagcagggcccgtataagacagaaccaggagacgag
taccatcaataccatactgacaaaacaggtcagtctcacggacctccaacacctccaact
actccaaaaactgacctccacatggggaacaaacacgagggtcagcgtcctgttgacacc
tctacctccaccacagggggccgtcagaacatcgacttcagtatcgtggacatctccgag
ctcagccccgacgtcatcagcaccatcgaggccttcgacgtcaacgagttcgaccagtac
ctccctcccaacggctccactctcctcaccccgacagatagcaccacccacggacacaac
accttcctcctgcccagcctccaccctcacatccttgccaggacgccaaaaagtgggact
gcatccgctttactatgtcgtgaaaaccccaggctccacgaggacacaaaacctcagata
aaaactgagcagatgagtccagatcactacagctgttcctccactcctccacaatctgat
tacacctcctttagttcaggctcatcctccaacacccaccaatctgactacagtgacctc
cagggctccggtttctacagcagtgctttctccggataccccgcagccggtctgtatcag
tacccgtacttccactcctcccgcaggccttatgtttcacctcttatcaacagcttggcc
ttggcaccacctccacacagtcctcctccatcagtctgggagcagccggtgtacacaaca
ctcagcaggccttga
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