Trematomus bernacchii (emerald rockcod): 117484594
Help
Entry
117484594 CDS
T09643
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1-like
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04517
IgSF CAM signaling
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117484594
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117484594
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tben04812
]
117484594
Cytoskeleton proteins [BR:
tben04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
117484594
Intermediate filaments
Intermediate filament-binding proteins
117484594
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
CAMSAP_CH
SCAR_helical
FERM_C1_MyoVII
DUF8074
Elf4
PH_17
Motif
Other DBs
NCBI-GeneID:
117484594
NCBI-ProteinID:
XP_033988917
LinkDB
All DBs
Position
Unknown
AA seq
2345 aa
AA seq
DB search
MMTAMELDHMDLQTSVLQTQFSSSNDTVNNRWDEEWDNENSSARLFERSRIKALADEREA
VQKKTFTKWVNSHLSRVSCRISDLYLDLRDGRSLIKLLEVLSGEKLPKPTKGRMRIHCLE
NVDKALQFLKEQRVHLENMGCHDIVDGNHRLTLGLIWTIILRFQIQDIIVDCDDNKEKRS
AKDALLLWCQMKTAGYPNVNIRNFSTSWRDGMAFNALIHKHRPDLIDFDKLKKSNAHHNL
QDAFNLAEQHLGITKLLDPEDISVDQPDDKSVITYVVTYYHYFSKMKALKVEGKRIGKVL
ENAIETEKMVEKYESLASDLLEWIEQTIIILNNRKFANALLGVQQQLQAFNTYRTAEKPP
KFTEKGNLEVLLFTIQSKMRANNQKVFTPREGKLISDINKAWERLEKAEHERELALRMEL
IRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVDAATKKHEAIETDITAY
EERVQAVLSVARELEAESYHDIKRVAARKENVVRLWEYLLELLKARRLRLETNLGLQRVF
QEMLHIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADISIQADRVKAVSSNATRF
SVSDAGYKPCDPQVIEDRVSHLEFCYQELTQLAAERRSRLEESRRLWKFFWDMAEEEGWI
REKEQILSSLENAKDLTGSLRLLSQQRALEHEMSGRNGLLKNTIAEGQDMVQAGHFAATK
IQERVCDLQDQWAALERLAAARKRKLEEALALHQFQTDADDVDAWTLDALRIVSSGETGH
DEFSTQALVRKHKDAAAEVSSYRSVIDSLQEQAAALPEEEAQSEEVRGRLAGIEERYKEV
SELTKLRKQALQDALALYKMFNEAHACQVWIDEKEQWLNSMEIPEKLEDLEVIQHRFESL
EPEMNNQASRVAVVNQIARQLKHNGHPSETDIKTQQDQLNNRWSQFRDLVDLKKESLNSA
LGVQNYHLECNETKSWIKEKTKVIESTQELGNDLTGVMALQRKLTGMERDLAAIEDKLGD
LRGEAERLATEHPDQAKAITGRLAEITAVWEEMKNTLKTREESLGEARKLQQFLRELDDF
QSWLSRTQTLIASEDMPNTLAEAEKLMAQHEGIKNEVQNYEEDYQKMRDMGELVTQGQTD
AQHMFLRQRLEALHTGWNELHKMWENRQNLLTQSHAYQLFLRDTKQAEAFLNNQEYVLAH
TEMSSTLEGAEAAIKKQEDFMTTMDANEEKINGVVEAGRRLASDGNINAERIQERVASID
ERHKKNREAAVELLMRLKDNRDLQRFLQDCQELTLWINEKMLSAQDLTYDEARNLHSKWL
KHQAFMAELQSNKEWLDQIQKDGRLLVSEKPETEAVVTEKLSDLHAMWAELESTTQTKAQ
CLFDANKAELFTQSCTDLDEWMGSMEGQIQSDDYGKDLTSVNILLKKQQMLEKQVEVRQR
EVGQLQSQVKALGQEEQDTEEVDGRRQLLEDKFTELLDPLQRRRDFLVESREVHQFTRDV
EDEILWVQERMAVATSSDHGNNLQTVQLLIKKNQTLQKEIQGHQPRIDDILERSVSLLKD
ESSEATRGRLAALQELWAQLKEEAQRRLDRLQEAHRAQQYYFDAAEAEAWMSEQELYMMS
EEKAKDELSAVTMQKKHQIAEQAVEDYAEAVHLLSKTSRGLVAEAHPESERISMRQSQVD
KLYAGMKDLSEERRGRLDERLRLFLLNREVDELEQWVAEREVVAGSHELGQDYEHVTMLQ
ERFREFARDTGNIGQERVDTVNRLADDLINAGHGDAATVAEWKDGLNEAWADLLELIDTR
TQILAASFELHKFYHDGKEILLRIVDKQKKLPEEAGRDQNTVETLQRMHSTFEHDIQALG
TQVRQLQDDAVRLQAAYAGDKADDIQRREQEVLEAWRFLLEACDARRLRLIHTGDKFRFF
SLVRDLMLWMEDVIWLIEAQENPRDVSSVELLMNNHQGIKAEIDARNDSFTTCIELGKSL
LARKHFASEEIKEKLLQLTDKRKEMIDKWEDRWEWLRLVLEVHQFSRDAGVAEAWLLGQE
PYLSSREVGYSVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELLEVRRLQEEELQR
RRPPPSPSPEPQQEEAQQQSVTQNGLPSDPESPPEGVVAPPMVNGDGGSKDPSPGSSPPP
SRKKSSQASTLPLRTPDAGTLLEGNLHRKHEWEGPNKKASNRSWHNVYCVVNKQEVSFYK
DGKAAATGLSYHGETSLRLQDAVCDVASEYKKKKHVFKLRAADGNEYLFQAKDEEEMSSW
IAAVLNAGSERSDRSDRSEPPGSIPGTPVSGRAQTLPNESSPGKREKDKEKEKEKRFSLF
SKKKQ
NT seq
7038 nt
NT seq
+upstream
nt +downstream
nt
atgatgacggcgatggagttggaccacatggaccttcagacctcagtccttcagactcag
ttcagcagcagcaacgacacggtgaacaaccgctgggacgaggagtgggacaacgagaac
agctcggcccggctgttcgagcgctcgaggatcaaagcactcgcagacgagcgcgaggcg
gtgcagaagaagaccttcactaagtgggtgaactctcacctgtccagggtctcctgcagg
atctcagacctgtacctggacctgagggatggaaggtccctcatcaagctgctggaggtg
ctgtcgggggagaaactgccgaagcccactaaaggccggatgcggatccactgcctggag
aacgtggacaaggctctgcagtttctgaaggagcagagagttcacctggagaacatgggc
tgccacgacattgtggacgggaaccaccgcctgacgctgggcctcatctggaccatcatc
ctgcgcttccagatccaggacatcattgtggattgtgacgacaacaaagagaagcgttct
gctaaggacgctctgctgctctggtgccagatgaagaccgccgggtatccaaacgtcaac
atccgcaacttcagcaccagctggagagacggcatggccttcaacgcactcatccacaag
cacaggcccgatctgatcgacttcgataagctgaagaagtcgaacgctcaccacaacctt
caggacgctttcaacctggcggagcaacacctgggcatcaccaagctgctggaccccgag
gacatcagcgtggaccagccggacgataagtcggtgatcacctacgtggtgacgtactac
cactacttctccaagatgaaggctctgaaggtggaggggaagcgcatcggcaaggtgctg
gaaaacgccatagagacggagaagatggtggagaagtacgagtctctggcctcagacctg
ctggagtggatcgagcagaccatcatcatcctcaacaacaggaagttcgccaacgccctg
ctgggggtccagcagcagctgcaggccttcaacacctaccggaccgcggagaagcccccc
aagttcacagagaaggggaacctggaggtcctgctgttcaccatccagagtaagatgaga
gccaacaaccagaaggtgttcacaccgcgagaggggaagctgatctcagacatcaacaag
gcgtgggagcgtctggagaaggcggagcatgagcgggagctggctctgaggatggagctg
attcgtcaggagaagctggagcagctcgccagacgcttcgacaggaaggcggccatgaga
gagacgtggctgagcgagaaccagaggctggtgtcgcaggataactttggcttcgacctg
caggcggtggacgcggccaccaagaagcacgaggccatcgagacggacatcacggcgtac
gaggagcgtgtccaggccgtcctatcggtggcccgggagctggaggcggagtcttaccac
gacatcaagcgcgtggcggccaggaaggagaacgtggtgcggctgtgggagtatctgctg
gagctgctgaaggcccgccggctgcggctggagaccaacctggggctgcagagggtcttc
caggagatgctgcacatcatggactggatggacgagatgaagatgctgctgctgtctcag
gactacgggaagcacctgctgggcgtggaggacctgctgcagaaacacgccctggtggag
gctgacatctccatccaggccgaccgcgtgaaggccgtcagctccaacgccacccggttc
tccgtcagcgacgctggctacaagccgtgcgaccctcaggtgatcgaggaccgggtctct
cacctggagttctgctaccaggagctgacccagctggctgcggagcgccggtcccggctg
gaggagtcccgccgcctctggaagttcttctgggacatggcggaagaggagggctggatc
cgggagaaggagcagatcctgtcctcgttggagaacgccaaagacctgacgggttctcta
agactgctgagtcagcagcgagcgctggagcacgagatgagcggccgcaacggactcctg
aagaacaccatcgctgagggccaggacatggtgcaggccggacactttgccgccacaaag
atccaggagcgtgtgtgcgacctgcaggaccagtgggcggctctggagcgcctggcagcg
gcgaggaagaggaagctggaggaggctctggcgcttcatcagttccagacggacgcagac
gacgtggacgcctggacgctggacgccctgcgcatcgtgtccagcggagagaccggccac
gacgagttctccacgcaggcgctggtccggaagcacaaggacgcggcggcggaggtctcc
agctaccggtccgtcatcgactcgctgcaggagcaggccgccgcgctgccggaggaggag
gcgcagtctgaggaggtccgcgggcgcctggccggcatcgaggagcgatacaaggaggtg
tcggagctgacgaagctgaggaagcaggcgctgcaggacgcgctggcgctctacaagatg
ttcaacgaggctcacgcctgccaggtctggatcgacgagaaggagcagtggctgaacagc
atggagatccccgagaagctggaggacctggaggtgatccagcaccgcttcgagagcctg
gagccggagatgaacaaccaagcgtcccgggtcgccgtggtgaaccagatcgcccggcag
ctgaagcacaacggacacccgagcgagacagacatcaagacgcagcaggaccaactcaac
aacaggtggagccagttcagagacctggtggacctgaagaaggagtccctgaactcggcg
ctcggcgtgcagaactaccacctggagtgcaacgagaccaagtcgtggatcaaggagaag
accaaggtgatcgagtccacgcaggagctgggcaacgacctgacaggtgtcatggcgctg
cagcgcaaactcaccggcatggagcgagatctcgccgccatcgaggacaagctgggagac
ctgcggggcgaggcagagcgtctggccacagagcacccggaccaggccaaggccatcacg
ggccggctggcggagatcacagcggtctgggaggagatgaagaacaccctgaagacccgc
gaggagtctctgggtgaggccaggaagctgcagcagttcctgcgcgagctggacgacttc
cagtcctggctgtctcgcacacagaccctcatcgcctccgaggacatgcccaacacgctg
gccgaggccgagaagctgatggcgcagcacgagggcatcaagaacgaggtgcagaactac
gaggaggactaccagaagatgcgggacatgggcgagctggtgacccagggccagacggac
gcccagcatatgttcctgaggcagcggctggaggcgctgcacaccggctggaacgagctg
cacaagatgtgggagaaccggcagaaccttctgacccagagccacgcgtaccagctgttc
ctcagggacaccaagcaggccgaggccttcctcaacaaccaggagtacgttctggctcac
acggagatgtcctccacgctggaaggagctgaggcagccatcaagaagcaggaggacttc
atgaccacgatggacgccaacgaggagaagataaacggcgtggtggaggcggggcggcgt
ctcgccagcgacgggaacatcaacgctgagagaatccaggagagagtcgcctccatcgac
gaaaggcacaagaagaaccgcgaggcggcggtggagctgctgatgaggctgaaggacaac
agagacctgcagaggttcctgcaggactgccaggagctgactctgtggatcaacgagaag
atgctgagtgctcaggacctgacgtacgacgaggcccggaacctgcacagcaagtggctg
aagcaccaggccttcatggccgagctgcagagcaacaaggagtggctggaccagatccag
aaggacggccggctgctggtgtcagagaagccggagacggaggctgtggtgacggagaag
ctgtcagatctgcacgccatgtgggcggagcttgagtccaccactcagaccaaagctcag
tgtctgttcgacgccaacaaggcggagctcttcactcagagctgcaccgacctggacgag
tggatgggaagcatggagggtcaaatccagtctgatgactacgggaaagacctgacctcc
gtcaacatcctgctgaagaaacaacagatgctggagaagcaggtggaggtgcggcagcgg
gaggtgggccagctgcagagccaggtgaaggctctgggacaggaggagcaggacacagag
gaggtggacggacggagacagctgctggaggacaagttcaccgagctgctggaccccctg
cagaggaggagggacttcctggtggagtccagggaggtccatcagttcaccagggacgtg
gaggacgagatcctgtgggtgcaggagaggatggccgtggccacgtcctcagaccacggg
aacaacctgcagacggtgcagctgctcatcaagaagaaccagaccctgcagaaggagatc
cagggtcatcagcctcgtatcgacgacatcctggagcgcagcgtcagcctcctgaaggac
gagtcctcggaggcgacccgtgggcgtctggcggcgctgcaggagctgtgggctcagctg
aaggaggaggcgcagcgacgcctcgaccgcctgcaggaggcgcaccgtgcgcagcagtac
tactttgacgctgccgaggccgaagcctggatgagcgagcaggagctgtacatgatgtct
gaggagaaggccaaggacgaactgagtgcggtcaccatgcagaagaagcatcagatcgcg
gagcaggcggtggaggattacgctgaggcggtgcacctgctgtccaagaccagcagaggc
ctggtggccgaggctcaccccgagagtgagaggatcagcatgcgtcagtctcaggtggat
aagctgtatgcaggtatgaaggacctatcagaggagaggcggggccgactggatgagagg
ctccgcctcttcctgctgaacagggaagtggacgagctggagcagtgggtcgctgagagg
gaggtggtggcaggaagtcatgaactgggacaggactacgagcacgttactatgctgcag
gagcgtttccgggagttcgcccgcgacacggggaacatcggtcaggagcgcgtggacacg
gtgaaccggctggcggacgatctgatcaacgcggggcacggcgacgcggccacggtggcg
gagtggaaggacgggctgaacgaggcgtgggccgacctgctggagctcatcgacacccgc
acgcagatcctcgccgcctccttcgagctgcacaagttctaccacgacggcaaggagatc
ctgctgcgcatcgtggacaaacagaagaagcttccggaggaggcgggacgcgaccagaac
accgtggagacgctgcagaggatgcactcgaccttcgagcacgacatccaggcgctgggg
acgcaggtgcggcagctgcaggacgacgcggtgcgcctgcaggcggcgtacgcgggggat
aaagctgatgacatccagcggagggagcaggaggttctggaggcctggaggttcctgctg
gaggcctgcgacgcccggaggctgaggctcatccacaccggggacaagttcaggttcttc
agcctggtgagggacctcatgctgtggatggaggacgtgatctggctcatcgaggcccag
gagaaccccagagacgtgtcgtcggtggagctgctgatgaataaccatcagggcatcaag
gcggagatcgatgctcgtaacgacagcttcacgacctgcatcgagctcgggaagtcgcta
ctggcccggaaacactttgcttctgaggagatcaaggagaagctgctgcagctgacggac
aagaggaaggagatgatcgataagtgggaggaccgctgggagtggctgagactggtgctg
gaggtgcaccagttctcccgggacgcgggcgtggccgaggcctggctgctgggccaggag
ccctacctctcctccagggaggtgggctacagcgtggacgaggtggagaagctcatcaag
cgccacgaagccttcgagaagtctgctgccacctgggaggagaggttctccgccctggag
aggctcaccacgatggagctgctggaggtgcgccggctgcaggaggaggagcttcagagg
aggagaccccccccctccccctcccccgagcctcagcaggaggaagctcagcagcagagc
gtcactcagaacggactgccctccgacccagaatcccccccggagggggtggtcgctccc
cccatggtgaacggtgacggcggctctaaggacccgagccccggcagctcgccccccccc
tctaggaagaagagcagccaggcctccacgctgcccctccgcacccccgacgccgggacc
ctgctggaggggaacctgcaccggaaacacgagtgggaggggcctaacaagaaggcctcc
aacaggtcgtggcacaacgtgtactgcgtggtcaacaaacaggaagtgagtttctataaa
gacgggaaggcggcggcgactggcctctcgtatcacggagaaacatcgctgcgcctgcag
gacgccgtctgtgacgtggcctcagaatacaagaagaagaagcacgtcttcaaactacga
gctgctgatggaaacgagtatctgttccaagccaaagatgaagaggagatgagttcctgg
atcgcggcggtcctgaacgccggctccgagcgctccgaccgttccgaccgctccgagcct
cccggcagcatcccgggaacgccggtgtcgggtcgcgctcagacgctgcccaacgagtcg
agtcccgggaagagagagaaggacaaagagaaggagaaggagaagcgcttcagcctgttc
agcaagaagaagcagtag
DBGET
integrated database retrieval system
