Trematomus bernacchii (emerald rockcod): 117485190
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Entry
117485190 CDS
T09643
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117485190 (pcdh18b)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117485190 (pcdh18b)
BRITE hierarchy
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
TMEM154
Motif
Other DBs
NCBI-GeneID:
117485190
NCBI-ProteinID:
XP_033989619
EnsemblRapid:
ENSTBNG00005023509
LinkDB
All DBs
Position
Unknown
AA seq
1234 aa
AA seq
DB search
MRGTMKQTKGIIFSSALFKLLLLVAITRGATGKTLKYKVYEEQRVGTVIARLKEDVAGVL
SKLPGSLTFRFRAMQRGSTPFLSVREEDGEISIGTKIDREKLCEKNVNCSIEFDVVTLPT
EYLQLFHVEVEVLDINDNSPHFSRAIVPIEISESASVGTRIPLDGAVDADVGENSLNTYS
LTPNNFFKIEVRTRTDGAKYAELVVMRDLDREVQQNYQLQLTASDNGVPPKSGSTLVKIS
ISDSNDNSPAFDEQAYMINFLENSPLGTLIIDLNATDPDEGTNGKIVYAFSSHVSPKILE
TFKINPESGHITLIKKVDFESTASYELDVQAQDLGPNSIPGLCKIVVKVVDVNDNKPEIN
INLMTPGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVVCRLHGHGHFRLQKTYEKNY
MILTNVSLDREKRSEYSLTVIAEDRGSPNLSTIKHFTVQVLDENDNPPRFEKSRYEVFKS
ENNSPGAYLMTLVASDPDLGTNGQITYSIVDALVQGSPISTYVTIDPSNGAIYALRSFDH
EDVSRIAFTVQARDGGNPVLSTNTTVLLTVLDENDNPPIIHSPSLRNHTAELSVWKYASP
GQLITVLKVTDRDAGTNGEISCAIVGGNEDRLFVMDARRCELRTNASLEQAPREVMEIRV
EVQDRGTIRLATGALFRLSLQENMDILPPLYPTGSSQAQLDLSLIVIISLGAVCALLLIV
MVMFASARCNREKKDPRHNYNCRVAESSYQNHPKKPARQIHKADITLVPTVNGTLPVRAH
PRSPSASPAPDRGTLGSRQSHHSRQSLNSLVTISSNHVAENFALELAHATPPVEQVSQLL
SMLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRESPMDR
LLGEGFTEIYAPDGQHRTHAAMRLCTEECRVLGHSDQCWMPPLASPASSSDYRSNLYIPG
EESHQACDPSQEKTPQPCTDTGPTRNQSFSTFGKDLGGEEDREEVEGGACVGEAGDEDLC
GTTSLLSEMSSVFQRLLPQGLDSYVQVNENQKGTGLSEVGVPMTGSLDRRRGHLPGKPNP
SVHQQGVAAWAANTHFQNPGSSIGPSSPHQGGSYHTLKPSTKLSSQSGHKGTQAPKNSPQ
NSGHTPKPHSSPLLTALVSPTLVHPSPAPVPVALCPSSKWLPAMEEIPENYEEDDFDSGR
GPLQGRRCDSRHELVDASELVAEINKLLQDVRQS
NT seq
3705 nt
NT seq
+upstream
nt +downstream
nt
atgaggggaacaatgaaacaaaccaaaggaattattttctcctcggcactgttcaagctt
ctccttttggtcgcgattacgcgcggtgccaccggtaagactttgaaatataaagtttat
gaggagcagagagtggggacggtgattgcacggttaaaggaagatgtagccggggtttta
tccaaattaccgggttccctgacctttcggttccgcgcaatgcaacgagggagtacgccg
ttcctctctgtccgggaggaggacggggagatcagcattggcaccaaaatcgaccgtgag
aagctttgtgagaaaaatgtgaactgctcgatagaatttgatgtggtcacactccccacg
gagtacctgcagctgttccatgtggaagtggaggtgctggacatcaacgataattccccc
cacttctcccgcgccattgtccctattgagatctcggaaagcgcatccgtggggacccgc
atcccgctggacggtgcagtggatgcggacgtcggggaaaactccctgaacacatattcc
cttacacccaataacttctttaagatcgaggtgaggacacggacggatggggccaagtac
gcagagctggtggtgatgagggacctggaccgggaggtgcaacaaaactaccagctccag
ctaacggcctccgataatggtgttcctccaaagtctggctccactttggtcaagatcagc
atctcggattccaacgacaacagcccagcctttgatgagcaggcatatatgatcaatttt
ctggaaaactctcccctagggactctaatcattgatttaaacgccacagatccagatgag
ggcactaatgggaaaatagtatacgcgttcagcagccatgtctcaccaaagatcttggaa
acctttaagataaacccagaaagtggccacattacccttattaaaaaagtggactttgaa
agcactgcttcctatgagctggatgttcaagctcaggacctgggccctaattccatccct
ggactttgcaaaattgttgttaaagtggtggatgtaaatgacaacaaaccagagataaac
atcaacctgatgacgcctggcaaagaggaagtggcctacatttcagagggggccccagtg
gacaccttcatagctctggttcgtgttgatgacagcgacgctgggctgaatggggaggtg
gtgtgccggctgcacggccatggacacttcagactccagaagacctacgagaagaactac
atgatcctcactaatgtatcgctggaccgggagaagaggtcagagtacagtctgaccgtc
atagcagaggaccggggctcccccaacctctccaccatcaaacacttcaccgttcaggtg
ttggatgaaaacgacaatcccccacgttttgaaaagagccgctacgaggtctttaaatca
gaaaacaactctcctggagcatacctcatgaccctggtggcctcagatccagatctgggc
accaatggccagattacctacagcatcgtagacgctctggttcaggggagccccatctcc
acctatgtcaccattgacccttctaatggcgccatctatgccttacgcagttttgaccat
gaagacgtcagtcggatcgccttcaccgttcaggcccgtgacggggggaacccagtgctg
tccaccaacaccacggtcctcttgactgttctggatgaaaacgacaacccgcccataatc
cactccccctccctccggaatcacaccgccgagctgtccgtgtggaagtatgcatcacct
ggtcagctgatcacggtgctcaaagtcacagaccgcgacgccggcaccaacggagagatt
agctgtgccattgtcggtggcaacgaggacaggctctttgtgatggacgccaggcgctgt
gagctcagaaccaatgccagcctggaacaggctccacgggaagtgatggaaatcagggtg
gaggtgcaagacaggggcaccatccgcctggccacaggggccctcttcaggctgtcgctg
caggagaacatggacatcttgccccccctctaccccacaggctccagtcaggcccagctg
gatctctccctcatcgtcatcatctctctgggcgctgtttgtgctctgctactcatcgtc
atggtgatgtttgcctctgctcgctgcaaccgtgagaagaaagatccgagacacaactac
aactgccgtgtggctgagagcagctaccagaaccaccccaagaagcccgccaggcagatc
cacaaggcggacatcaccctggtccccacggtcaatgggactctgcctgtgagagcccac
cctcgctccccatcagcctcccccgcccccgacagaggcaccctggggagcaggcagagc
caccacagccgccagtccctcaacagcctggtcaccatctcctccaatcacgtggcggag
aactttgccctagagctggcccacgccacgcctcctgtagagcaagtctcacagcttctg
tccatgctccatcagggccagtaccagccacgacccagcttcagaggcaacaaatacacc
agaagctacagatacgcgctgaatgagatggataagttcagtctgaaggacagcgggcgg
ggggacagtgaggcgggggacagcgactacgagcctggccgggagtcccccatggacagg
ctccttggtgagggctttactgagatatatgcccctgatggccagcacagaacgcatgca
gccatgaggctgtgcacagaagagtgccgtgtgctgggtcactcagatcagtgctggatg
ccccccctggcctcccccgcctcgtcctctgactaccgcagcaacctctacatccccggg
gaagaatcccaccaagcatgcgacccctcccaggaaaagaccccgcagccctgcaccgac
accggccccacccggaaccaaagcttctccaccttcggcaaggacctggggggtgaggaa
gacagagaagaggtggaggggggggcttgtgtgggcgaggccggagatgaagacttgtgt
gggaccacctctctgctgtcagagatgagcagtgtgttccagcggctgttaccccagggg
ctggattcctacgtccaggtcaacgagaaccagaaggggactggtctcagcgaggtgggg
gtaccaatgactggatctttagaccgcaggaggggccatcttcctggcaagcccaacccc
tccgtccaccagcagggcgtagcagcctgggccgccaacacccacttccagaacccgggc
agcagcattgggccatccagcccccaccaggggggcagctaccacaccctcaaacccagc
accaagctcagctcccagagcggccacaagggcacacaggcccccaaaaacagcccccag
aacagtggccacacacccaaaccccatagcagccccctcctcacggcactggtcagcccc
actctggtgcacccctcacccgccccggtgccggtggcgctctgcccctcctccaaatgg
ctcccggccatggaggagatcccggagaactacgaggaggacgactttgactcggggcgc
ggccccctgcagggcaggcgctgcgacagcaggcacgagctggtggacgccagcgagctg
gtggcagagatcaacaaactcctgcaggacgtccggcagagctag
DBGET
integrated database retrieval system
