Trematomus bernacchii (emerald rockcod): 117485438
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Entry
117485438 CDS
T09643
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117485438
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117485438
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
Cadherin_CELSR2_9th
7TM_GPCR_Sri
Peptidase_S55
Motif
Other DBs
NCBI-GeneID:
117485438
NCBI-ProteinID:
XP_033989884
LinkDB
All DBs
Position
Unknown
AA seq
816 aa
AA seq
DB search
MMACLWITARRGRWQALVVTLCLFELSSVAGQARYSVPEEQAEGSVVGNIARDLGVDGTR
LISGKARIITKGSRQYVDLNRDKGTLVIKERIDREELCGKTTPCSFSFELILENPIQLYR
VTVEVIDINDNSPSFPKDEINLNIVESVTSGARFSLESAYDQDVGMNDIQKYMLKSSDNF
KLEVQSQSHGGNLVEIVLKTPLDREKEETHNLVLIASDGGEPHRSGTVRIHITVLDANDN
APVCSQTVYKAEVKENSPTGTVVTTVSATDADKGVNGEVTFSIAQFAREVKQLFEVNVKT
GEIKVAGNLDFEKSKTFQLNVKASDHGGHSDTCNVIVQIIDENDNVPTIQLMSFSNSISE
DSPPGTTIAVINVDDEDSDGNGVVKCSINSDIPFKIESSLTGYYTIVTEDYLDRESIPEY
NITITVSDQGSPPLTSSKNINVKVSDVNDSPPRFDQSEYSKTVPENNSPGFSVFTLSASD
SDWGQNARVSYFLEEKDNNGAAVTSLVSVNSENGVIHALRSFDYEQIKWFEFNVTARDAG
SPPLSSVATVKILIQDQNDNPPQVLYPVQTGGSLVAEMVPRSADVGYLVTKVVAVDVDSG
QNAWLSYKLQKATDRALFEVGLQNGEIRTIRQVTDKDAVKQRLTVIVEDNGQPSRSATVI
VNVVVADSFPEVLSEFTDFTQDKEYNDNLTFYLVLALAVVSFLFITCLVVIISVKIYRWR
QSRIMFHSNLPVIPYYPPRYSDTLGTGTLQHVYNYEVCRTTDSRKSDCKFGTAGSQNVLI
MDPSSTGTMQRIQSEKSILDEPDSPLEGRCWSSKNM
NT seq
2451 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttgtttgtggataaccgcgcgcagaggccgatggcaagcactggtggtgact
ctttgtctgttcgagctgagctcagtagctggacaggctcggtactccgtaccggaggag
caggcagaaggctctgttgttggaaacatcgctagagatttaggtgtggatggtacgagg
ctcatatcaggtaaagctcgtattattaccaaaggaagccgacagtacgttgatttaaac
agagacaaaggcacccttgttattaaagagcggatcgaccgagaagagctgtgtggaaag
acgacgccctgtagcttcagtttcgagctcattttagaaaacccaatccagctttaccgt
gtaacagtggaggttatagatataaacgataacagcccgtcttttcctaaggatgaaatc
aatttaaatatcgtggaaagtgttacatcaggggctcgcttctcacttgagagtgcatat
gaccaagatgtgggaatgaatgatattcaaaaatacatgcttaaatcttcagataacttc
aaattggaagttcaaagccagtctcatgggggaaatttggtcgaaattgttttaaaaacc
ccgttggaccgagagaaagaagagacccacaatctcgtgctgattgcttcagatggaggg
gagccacacagatcagggacagtgcgcattcacatcactgtgctggatgctaacgataat
gcgccagtgtgcagccaaactgtttataaagcagaagtcaaggaaaactctcctacagga
acagtggtaactactgtgagtgcaactgatgcagataaaggagtcaatggcgaagttaca
ttttccatagcacagttcgctagagaggtgaagcagctttttgaagtaaatgttaaaact
ggagaaattaaagttgcaggtaatcttgattttgaaaaatctaagacctttcaattaaac
gttaaggctagtgatcacgggggacattcagatacttgtaatgttattgttcaaataatt
gacgagaatgacaacgtccctacaattcagctaatgtcattttctaactctatatctgag
gattctcctccaggtacaactatagctgttattaatgttgatgatgaagactctgatggt
aacggtgttgtaaaatgctccatcaactctgatatacctttcaaaatcgagtcctcatta
acaggatattatactatagtaaccgaagactacttagacagagaaagtattcctgagtat
aatatcaccatcaccgtctctgaccaaggctccccgcctctgaccagcagtaaaaacatt
aacgtaaaagtttctgacgtgaatgacagcccgcccagatttgaccaatcagaatatagt
aagactgtaccagagaataactctccagggttttctgttttcactctaagtgctagtgat
tcagactggggtcaaaacgctcgagtttcttactttctggaagagaaagacaataatggg
gcagctgtgacttccttagtgtcagtcaattcagaaaatggtgtcattcatgctttaagg
tcttttgattatgagcagatcaagtggtttgaatttaacgtaactgctcgcgatgctgga
tccccccctctgagttcagtggccacagttaaaatactgatccaggaccagaacgacaac
cctcctcaggtcctgtacccagtccagactggtggctctctggtggctgagatggtgcct
cgttcagcagatgtgggctatctggtcactaaagtggtggctgttgatgtggactctgga
cagaatgcctggctctcctataaactgcagaaagccacagacagggcgctgtttgaagtg
ggcttacagaatggagaaataaggactatccgccaggtgactgataaagatgctgtgaaa
cagagactgactgttatagtggaggacaacgggcagccctctcgttcagctacagtcatt
gttaacgtggtggtggcggacagcttcccggaagtgctgtctgagttcactgactttaca
caggacaaggagtacaatgacaacctgactttttacttagtgctggctctggctgtagtg
tccttcctcttcatcacgtgtttagtggttattatatcagtgaagatctacaggtggaga
cagtctcgcatcatgtttcactccaacctccctgtgattccatattatcctccacgttac
tcagacactttggggacagggactctccaacacgtgtacaattacgaggtgtgcaggacg
actgactccagaaagagtgactgtaagttcggcacagccggaagtcagaacgtgctgata
atggaccccagttctacaggcacgatgcagcggatacagagtgaaaagagcatcctggat
gaacctgactctcctctagagggccgctgttggtcttcaaaaaacatgtga
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