Trematomus bernacchii (emerald rockcod): 117485443
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Entry
117485443 CDS
T09643
Name
(RefSeq) protocadherin beta-16-like
KO
K16494
protocadherin beta
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117485443
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117485443
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
Cadherin_C_2
7TM_GPCR_Sri
Motif
Other DBs
NCBI-GeneID:
117485443
NCBI-ProteinID:
XP_033989890
LinkDB
All DBs
Position
Unknown
AA seq
818 aa
AA seq
DB search
MMACLWIPARRGRWQALFVTLCLFELSSVAGQARYSVPEEQAEGSFVGNIARDLGLDVTR
LISGKARIITKGSRQYVDLNRDKGTLVIKERIDREELCRKTTPCSFSFELILENPIQLYR
VTVEVIDINDNSPSFPKGEIHLKIVESAASGSRFSLESADDPDVGINDIQKYMLKTSDNF
KLEVQIQPDGENVIEMVLQTPLDREKEETHNLVLIASDGGEPHRSGTVRIHITVLDANDN
APVCSQPVYKAEVKENSPTGTVVTSVSATDADKGVNGEVSYSIANVAREATNIFVVNVKT
GEIKVAGILDFEESKTFQLNVKASDHGGYSDTCKVIIQIIDENDNVPTIQLMSFSNSISE
DSPPGTTIAVINVDDEDSDGNGVVKCFINSDIPFKIESSLTGYYTIVTEDYLDRESIPEY
NITITVSDQGSPPLTSSKNINVKVFDVNDSPPRFDQSEYSKTLPENNSPGFSVFTLSASD
SDWGQNARVSYFLEEKEINGAAVTSLVSVNSENGVIHAVRSFDYEQIKWFEFNVTARDAG
SPPLSSVATVKILIQDQNDNPPQVLYPVQTGGSLVAEMVPRSADVGYLVTKVVAVDVDSG
QNAWLSYKLQKATDRALFEVGLQNGEIRTIRQVTDKDAVKQRLTVIVEDNGQPSRSATVI
VNVVVADSFPEVLSEFTDFIQDKEYNDNLTFYLVLALAVVSFLFITCLVVIISVKIYRWR
QSRIMFHSNLPVIPYYPPRYPDTLGTGTLQHVYNYEVCRTTDSRKSDCKFGRAGSQNVLI
MDPSSTGTMQRIQSEKSILDEPDSPLEVSYFIAKQSFF
NT seq
2457 nt
NT seq
+upstream
nt +downstream
nt
atgatggcttgtttgtggatacccgcgcgcagaggccgatggcaagcactgtttgtgact
ctttgtctgttcgagctgagctcagtagctggacaggctcggtactccgtaccggaagag
caggcagaaggctcttttgttggaaacatcgctagagatttaggtttggatgtgacgagg
ctcatatcaggtaaagctcgtattattaccaaaggaagccgacagtacgttgatttaaac
agagacaaaggcacgcttgttattaaagagcggatcgaccgagaagagctgtgtagaaag
acgacgccctgtagcttcagtttcgagctcattttagaaaacccaatccagctttaccgt
gtaacagtggaggtgatagacataaatgataacagtccgtcgtttccaaagggggaaata
catttaaaaattgtggaaagtgctgcatcaggctctcgcttctctctagagagtgcagac
gaccctgatgttggaattaatgatattcaaaaatacatgctaaaaacttcagataatttc
aaactggaagtgcagatccagcctgatggagagaatgtgatcgaaatggttttacaaacc
ccgttagaccgggagaaagaggagactcacaacctcgtgctgattgcttcagatggaggg
gagccacacagatcagggacagtgcgcattcacatcactgtgctggatgctaacgataat
gcgccagtgtgcagccagcctgtttataaagcagaagtcaaggaaaattctccgacagga
acagtggttacctctgtgagtgcaactgatgcagataaaggagtcaatggtgaagtatct
tattccattgctaatgttgccagagaggcaacaaatatttttgtagtaaacgtcaaaact
ggagaaattaaagttgcaggtattctggattttgaagaatctaagacctttcaattaaac
gttaaggctagtgatcatggaggatattcagatacgtgcaaagtgattattcaaataatt
gacgagaatgacaacgtccctacaattcagctgatgtcattttctaactctatatctgag
gattctcctccaggtacaactatagctgttattaatgttgatgatgaagactctgatggt
aacggtgttgtaaagtgcttcatcaactctgacatacctttcaaaattgagtcctcatta
acaggatattatactatagtaaccgaagactacttagacagagaaagtattcctgagtat
aatatcaccatcaccgtctctgaccaaggctccccgcctctgactagcagtaaaaacatt
aacgtaaaagtttttgacgtgaatgacagcccgcccagatttgaccaatcagaatatagt
aagactttaccagagaataactctccggggttttctgtgttcactctaagtgctagtgat
tcagactggggtcaaaacgctcgagtttcttactttctggaggagaaagagattaatggg
gcagctgtgacttccttagtgtcagtcaattcagaaaatggtgtcattcatgcagtaagg
tcctttgattatgaacaaatcaaatggtttgaatttaacgtaactgctcgcgatgctgga
tcccctcctctgagttcagtggccacagttaaaatactgatccaggaccagaacgacaac
cctcctcaggtcctgtacccagtccagactggtggctctctggtggctgagatggtgcct
cgttcagcagatgtgggctatctggtcactaaagtggtggctgttgatgtggactctgga
cagaatgcctggctctcctataaactgcagaaagccacagacagggcgctgtttgaagtg
ggcttacagaatggagaaataagaactatccgccaggtgactgataaagatgctgtgaaa
caaagactgactgttatagtggaggacaacgggcagccctctcgttcagctacagtcatt
gttaacgtggtggtggctgacagcttcccggaagtgctgtctgagttcactgactttata
caggacaaggagtacaatgacaacctgactttttacttagtgctggctctggctgtagtg
tccttcctcttcatcacgtgtttagtggttatcatatcagtgaagatctacaggtggaga
cagtctcgcatcatgtttcactccaatctccctgtgattccttattatcctccacgttac
ccagacactttggggacagggactctccaacacgtgtacaattacgaggtgtgcaggacg
actgactccagaaagagtgattgtaagttcggcagagccgggagtcagaacgtgctgata
atggaccccagttctacagggacgatgcagcggatacagagtgaaaagagcatcctggat
gaaccagactctcctctagaggttagttatttcattgcaaagcagtcattcttttaa
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