Trematomus bernacchii (emerald rockcod): 117486685
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Entry
117486685 CDS
T09643
Symbol
dicer1
Name
(RefSeq) LOW QUALITY PROTEIN: endoribonuclease Dicer
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117486685 (dicer1)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
117486685 (dicer1)
microRNA pathway
RISC loading complex
117486685 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Ribonuclease_3
Dicer_PBD
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
DSRM_2
dsrm
Motif
Other DBs
NCBI-GeneID:
117486685
NCBI-ProteinID:
XP_033991085
LinkDB
All DBs
Position
Unknown
AA seq
1908 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAAIEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYQENAKRTVFLVNTALTVVQQAAAVRTHSDLTVGEYTDVEET
SAWTDQRWSQELIQNQVLVMTCHIFLHVLKNKILPLSKINLVVFDDCHLAITEHPYCEIM
KLFEGSSCCPRILGLTASILNGKCDPSELEQKILSLERVLKSNAETATDLVVLDRYSSQP
REVVLDCGPYLDKSGLSQCLQEELEEALHFLNDCNLCVTKEDRDPTFISKQVLGDFLAVL
MVLGPWCADKAAGIMVREIQKYIKHEQEELSRKFLLFTDTILRKVHALCEEHFSPASLDL
KFVTPKVLRLLEILHEYKPFERQQFESVEWYNNRNQDDYVSWSDSEDEDEDEEVEVKERP
ETNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTRGFEEDLTTYKSIEKILRNKCSKSVEVGEYELEQVLDDDNI
IPPYVLRSEDGSPRVTVNTAIGHINRYCARLPSDPFTHLAPKCKTAERPDARFQSTLYLP
INSPLRVPLKGPIMFCARLAEKAVALLCCEKLHKIGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPECLRDSYAVPEQTYYLYVVGMVLTTPLPDELNFRRR
RLYPPEDTTRCFGILTAKPIPRIPHFPVYTRSGEVTISIELQKSGFTLTTAQLDLITRLH
QYIFSHILRLEKPALEFKPTLADSAYCVLPLNVVDDSNTLDMDFSFMEDIEKSEARTGIP
TTQYTKQNPFSFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAE
YYKTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNK
QILVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASEAGVGAQTLPPDFR
YPNLDFGWKRSIDSKTFISCPDSCSDDDDDDENEGEGPCEHQETVTPEPNSLARPSSPHP
LVAPEPEEEPCTRTLTNGTALSTNCDDDGPQDEHLHQQDNCQRSRPRSPGPQSPQSIQST
TSLPVQPPPPSSKKPSSSPPQPSDECTPGSTSNPSTSVCCLPAPAVPSDQHGAPAGDPLK
SLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRS
KKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKSCTDILDSEEVKEELLA
NGQSGTDFDEDDEEAEECKEVEEEEEEGLMLKEEPKDEVNVEDDLEYYKEHIKFIDNMLL
GSGAFGKKISLSSFPPSPSPSPSPSLTPASASAPATETPREWKPPKKPHHPTAAHYPPEP
APSGPSAEEFDYSSWDAMCYLDPSKAGEEDDFVVGFWNPSEENCGAELGKQSISYDLHTE
QCIADKSIADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPMDRGALTGAVVLSGQTNTL
DLNYGWLKIPPRSVLDHHPDPEGTLTHLISGFENFERKINYTFQNKTYLLQAFTHASYHY
NTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDY
HKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFES
LAGAIYMDSRMSLETVWEVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTY
DGKVRVTVEVVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVQKN
NT seq
5727 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcctacagctggttacccctgccacttcacccatggggcctttctttggtctg
ccctggcagcaggaggctatccatgataacatctatacaccgaggaaatatcaggtagaa
cttcttgaagcagctattgaacataatactatcgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacaaaagagctctcccaccaaatccgtggacattaccaa
gaaaatgcgaagaggactgtttttttggtgaacacagctctgactgtagttcagcaggca
gctgcagtcaggactcactctgacctcacggtgggagagtacacagacgtggaggagacc
tcagcatggactgaccagcgatggagtcaagagttaatccagaatcaggtgctggtcatg
acctgccacatattccttcacgttctaaagaataaaatcttgccgttgtctaaaatcaac
ttggtggtttttgatgattgtcacctggccatcacagagcacccttactgtgagataatg
aagctgtttgagggctcctcatgctgccctcgtatcctgggtctcacagcctccattctg
aacgggaagtgtgacccgtcagagctggagcagaagatcctgagtctggagagggtcctg
aagagcaatgctgagaccgccactgaccttgtggttctggacagatattcctctcagccc
agagaagtggtgctggactgcggcccctacctggataagagtggtctctctcagtgtctg
caggaggagctggaggaagcgctccacttcctgaacgactgcaacctctgtgtcaccaaa
gaggaccgggaccccaccttcatctccaaacaggtcctgggtgacttcctggccgtgctc
atggttttagggccctggtgtgcagataaggccgcaggcatcatggtgcgcgagatccag
aagtacatcaaacacgagcaggaggagctcagccgcaagttcctgctcttcaccgacacc
atcctgcgcaaagtgcacgccctgtgcgaggagcacttctcccccgcctccctggacctc
aagttcgtcacccccaaggtcctccggctgctggagatcctgcacgagtacaagcccttt
gagcggcagcagttcgaaagcgtagagtggtacaataaccgcaaccaggacgactacgtc
tcatggagcgactctgaggatgaagatgaggacgaggaggtggaagtcaaagagaggcct
gaaaccaacttcccctcgccgttcaccaacatcctttgtgggatcatcttcgtggagagg
cgctacacggctgtcgtcctcaaccgtctgatcaaagaggcggggaagcaggacccggag
ctggcttacatcagcagcaacttcatcaccggccacagcatcggcaagaaccagccgcgc
aacaagcagatggaggtggagttcaggaagcaagaggaggttcttcgcaagttccgcgct
catgaaaccaacctgctgatcgccaccagcatcgtggaggagggcgtggacatcccaaag
tgtaacctggtggtgcgcttcgacctgcccacagagtaccgctcctacgtccagtccaaa
ggcagagcgcgagcccccgtctccaactacatcatgctggctgacagcgagaggaccaga
ggcttcgaggaagatctcaccacctacaagtccatagagaagatcttaaggaacaagtgc
tccaagtcggtggaggtaggtgagtatgagttggagcaggttctggacgatgacaacatc
atccctccctacgtgctccgctctgaggatggaagcccccgggtcaccgtcaacacggcc
atcggacacatcaacaggtattgtgctcggctgcccagcgaccctttcactcacttagcc
ccgaagtgtaaaactgcagagaggccggacgcacgcttccagtccacgctctacctgccc
atcaactcccctctgagagttcctcttaagggtcctatcatgttctgtgccaggctggca
gagaaagcagttgcacttctatgttgtgagaaactccacaaaataggtgagctggatgat
cacctgatgccggtgggaaaggagacggtgaaatatgaagaggagctggacctccacgat
gaagaggagaccagcgtaccaggccggcccggctccaccaagaggaggcagtgctaccct
aaagccatacctgagtgtctgagggacagttacgcagtgccagagcagacgtactaccta
tatgtggtcgggatggtgctcaccacccccctccctgatgaactcaactttcgcagaagg
aggctgtacccaccggaggacaccaccaggtgcttcggcatcctgactgccaaacccata
cctcgaatcccccatttcccggtgtacacccgctcgggtgaggtgaccatctccatcgag
ctgcagaagtccggcttcacgctgaccaccgcccagctggacctcatcacccgcctgcac
cagtacatcttctcccacatcctccgcctggagaaacctgcactggagttcaagcccacg
ctggctgactcggcctactgcgttctacctctgaatgttgttgatgactccaacacacta
gacatggacttttccttcatggaggacattgagaagtctgaggcccgcaccggcattcct
accactcagtacaccaagcagaaccccttcagcttcaagctggaggactaccaggatgct
gtcatcattccacggtatcgtaactttgaccaaccgcatcgcttctatgtcgccgacgtg
tacacagacctgacgccgctcagcaagtttccctctccagagtacgagacgtttgctgag
tactacaaaaccaagtacaacctggacctgtccaacctgaaccagccgctcctggatgtg
gaccacacctcctccagactgaacctgttaacccctcggcacctgaaccagaaaggcaaa
gctctgccgctcagcagcgcagagaagaggaaggccaagtgggagagtctgcagaacaaa
cagatcctggttccagagctgtgtgccatccaccccatccccgcctctctgtggaggaaa
gctgtgtgcctgcccagcatcctgtaccgcctccactgtctgctgactgcagaggagctg
cgggcccagaccgccagtgaggctggagtgggggctcagaccctcccccccgacttcagg
tatccgaacttggactttggctggaagcgatccatcgacagcaagacgttcatctcctgc
cctgactcctgcagtgatgatgatgatgatgatgagaatgagggtgagggtccctgtgag
caccaagagactgtaacccctgaacccaactccctagcgcgtcccagcagtccccacccc
ctcgtggcccctgagcctgaagaagagccctgcaccaggaccctaaccaacggcacggcc
ctcagcaccaactgcgatgacgacggtccccaagacgagcaccttcaccaacaggacaac
tgccaacgctcccggccccgctcccctgggccgcagagcccccaatcaatacaaagcact
acctcacttcctgtgcagcccccccctcccagctccaagaagcccagctccagtcctccg
cagcccagtgacgaatgtacgccagggagcacctcaaatccatctacctcagtctgctgc
ctgccggctcccgcagtaccttctgatcagcacggagccccggcaggagaccccctcaaa
agcctggggcccaaccctggtctcatcctgcaggcgctgaccctctccaacgccagcgac
ggcttcaacctggagcgcctcgagatgctcggagattctttcctcaaacacgccatcacc
acgtacctgttctgcacctaccccgacgcgcacgagggccgcctcagctacatgcgcagc
aagaaggtgagcaactgtaacctgtaccgcctggggaagaagaagggcctccccagcagg
atggtggtgtccatcttcgacccccccgtcaactggctgccccccggatacgtggtgaac
caggacaagagctgcacagacatactggactcagaggaggtcaaagaggagctcctggcc
aacgggcagtctggaacggactttgacgaggacgatgaggaggctgaggagtgtaaggag
gtggaggaggaggaagaggaggggctgatgctgaaggaagagccgaaggacgaggtgaac
gtggaggacgatctggagtactacaaggagcacatcaagttcatcgacaacatgctgttg
gggtccggagcgtttggcaagaagatctctctgagcagcttccccccctccccctccccc
tccccctccccctccctcaccccggcctcggcttccgcccctgctacggagaccccacgc
gagtggaagcccccgaagaagccccaccatcccaccgcagcccactacccccctgagccg
gcgcccagcgggccctcagccgaggagtttgactacagctcgtgggacgccatgtgctac
ctggaccccagcaaggcgggggaggaggacgacttcgtggtgggcttctggaacccgtca
gaggagaactgcggggcggagctgggcaagcagtccatctcctacgacctgcacacggag
cagtgcatcgccgacaagagcatcgccgactgtgtggaggctctgctgggctgctacctc
accagctgtggagagagagccgcccagatgttcctctgctccctgggcctcaaggtgtta
ccgatggacaggggggctctgacgggtgccgtggtgctaagcggtcagaccaacactttg
gacctgaactacggctggctgaagatccccccccgctccgtgctggaccatcatcctgac
ccagaaggaactctcacccacctcatctccggcttcgagaactttgaaagaaagatcaac
tacacgtttcagaacaagacctacctgctgcaggccttcactcacgcttcctaccattac
aacaccatcacagattgttaccagcgactggagttcctcggcgatgcaattttagactac
ctcattacaaagcacctttatgaagacccccggcagcactccccgggcgtgctgaccgac
ctgcgttcagcactcgtcaacaacaccatctttgcctctctggccgtcaagtacgactac
cacaagtacttcaaggccatctcgcccgagcttttccacgtcatcgacgacttcgtgcag
ttccagctggagaagaacgagatgcaaggcatggactctgagctgcggcgctcagaagag
gacgaggagaaggaggaggacattgaggtcccgaaggccatgggggacatctttgagtcg
ctggccggagccatctacatggacagcaggatgtctctggagaccgtgtgggaggtgtat
tatccaatgatgaggccactcatagagaaattctctgccaacgtgccacgctctcctgtg
agggagctgctggagatggagccagaaactgccaagttcagccctgcggagaggacgtac
gacgggaaggtgcgggtgaccgtggaggtcgtggggaagggcaagttcaaaggagtgggc
cgcagctaccgcatcgccaagtctgcggcggcgagacgagctctgcgcagcctcaaagcc
aatcaacctcaggtccagaaaaactga
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integrated database retrieval system
