Trematomus bernacchii (emerald rockcod): 117487137
Help
Entry
117487137 CDS
T09643
Symbol
clp1
Name
(RefSeq) polyribonucleotide 5'-hydroxyl-kinase Clp1
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117487137 (clp1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117487137 (clp1)
Enzymes [BR:
tben01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
117487137 (clp1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117487137 (clp1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
ATP_bind_1
MMR_HSR1
AAA_16
TniB
AAA_22
AAA_18
Motif
Other DBs
NCBI-GeneID:
117487137
NCBI-ProteinID:
XP_033991690
LinkDB
All DBs
Position
Unknown
AA seq
441 aa
AA seq
DB search
MATEGVETTSEEVPVPGKFSTRYDLEKETELRFEVESGEAVEQIELELLTGMAEVFGSEL
NRNKKYTFGAGAKIAVFTWQGCSVNLYGKPEVAYVSKDTPMLLYLNTHAALEQMRRQAER
DNERGPRVMVVGPTDVGKSTVCRLLLSYAVRVGRRPTLVELDVGQSGVSVPGTVSALCIE
RPADVEEGFSVQAPLVYHFGSTTPGTNIKLYNKLTSCLAEVYSQRCEVNRKASVGGCIIN
TCGWVKGSGYQALVHCASAFEVDVVLVLDHERLYNELKRDLPHFVRVVLLPKSGGVVERS
KECRRDTRDEKIREYFYGFRGVTFYPFSYEVRFSDVRIYKIGAPSIPDSCLPLGMSQDDT
QLKLVPVTPGRDLTYHVLSVSSAEDGEEGARKGIVESPVCGFIVVTNVDTQTQVMKVLSP
APRPLPRHTLLIMDIRFMDSK
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggccacagaaggtgtggaaaccacaagtgaagaggtcccagtacctggaaagttcagc
accaggtatgatctcgagaaggagactgaactcaggtttgaggtggagtcaggggaggca
gtggagcaaattgaactggagctcctcacaggaatggctgaggtgtttggatcagagctg
aaccgcaacaagaaatacacatttggagcaggagccaagattgcagttttcacctggcaa
ggctgcagtgtgaatctctacgggaagccagaggtggcttatgtgtctaaagatactccc
atgctgctctacctgaacacacatgctgccctggaacagatgagaagacaagcagagcgg
gacaatgagagggggccaagagttatggtggttggacctacagatgtggggaagtcaaca
gtgtgccggcttctgttaagctacgctgtaagggtgggccggcggccgacactggtggaa
ctggatgttggacagagtggggtgtcagtacctgggacagtttcggcactgtgcattgag
cgcccagcagacgtggaggagggtttctccgtccaggctcctttggtctaccactttggc
tctactaccccagggacaaacatcaaactttacaataagctgacgtcatgcctggccgag
gtgtattcccagcgctgtgaggtgaacaggaaggccagcgtgggaggctgcatcatcaac
acctgcgggtgggtgaagggctctggataccaggctctggtccactgtgcctctgccttt
gaggtggacgtggtgctggtgctggaccatgagaggctctataatgaactcaaacgagac
ctccctcactttgtacgggttgtgctcctccctaagtccggaggtgtggtggagcgctcc
aaggagtgcaggcgggatactcgcgatgagaagatccgcgagtatttctacggcttcagg
ggagtgaccttttaccccttttcctatgaagtacgtttctcagatgtccgcatctacaag
atcggagcaccatccatcccggactcatgtttgcccctgggaatgtctcaggacgacaca
cagctgaagctggtgcctgtgactccagggagagaccttacgtatcatgtgctgagcgtg
agcagcgcagaggacggagaggaaggggctagaaagggtatcgtagagagccctgtgtgt
ggctttatcgtggtgactaatgtggacacacaaacacaggtgatgaaggtgctgtccccg
gcacccagacccctgcccagacacactctgcttatcatggacatccgcttcatggacagt
aaatga
DBGET
integrated database retrieval system
