Trematomus bernacchii (emerald rockcod): 117487216
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Entry
117487216 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: LIM domain-binding protein 3-like
KO
K19867
PDZ and LIM domain protein 5/6/7
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117487216
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tben04990
]
117487216
Domain-containing proteins not elsewhere classified [BR:
tben04990
]
LIM domain-containing proteins
PDZ-LIM family proteins
117487216
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
LIM
PDZ
DUF4749
PDZ_6
LIM_FHL2-3_N
Motif
Other DBs
NCBI-GeneID:
117487216
NCBI-ProteinID:
XP_033991778
LinkDB
All DBs
Position
Unknown
AA seq
620 aa
AA seq
DB search
MSCYTVTLPGPGPWGFRLQGGKDFNMPLTISRITPGSKSAQGNLVQGDVIVAIDGVGTDG
MTHLEAQNKIKMANYNLALTMTKAKRNAAMPIPSAFPIVPQQQPQVNGHLSACSASPGPA
GADSPGGGAAASPTQRKQYNNPIGLYSEETLREMAAIQAGLPVGGPSEVTAPGGKATIXH
AQYNTPPSACNSQDAIMDVIAGQTQGMGHDAGLKRQSAAGYSVQRRVGGSSQYSQPPAMH
QAPQGPPPQQYQQPMPQQQYQQPMQQQQYQQPMQQQQYQQPMQQQQYQQPIPQQYQQPPT
QQAPPTQQSSIQIPLGSAPPKVVSTACIYPSQPAPPPAAQPCPPAAAPPQPPAAPSPSNR
PPWVSDTNFADKFDPSKMTTTMKVQQLPQGAPPPPTYNPNPSSSAPAAPSPAPATPTPAT
FTPVARGVAQRAERFAASSRTPLCGSCNGVIRGPFLSALGRSWHPEEFHCHYCHMSLADA
SFVEEQNNVYCENCYEEFFXPTCARCNTKIMGEVMHALRQTWHTTCFVCAACGKPFGNSL
FHMEDGEPYCEKDYISLFSTKCHGCDFPVEAGDKFIEALGHTWHDTCFVCAVCNVNLEGQ
PFYSKKDKPLCKKHAHAINV
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgagctgctacacagtgacgctccccggccccgggccctggggcttcagactgcagggg
ggcaaggacttcaacatgcccctcaccatctccaggatcacgccgggcagcaagtcggcg
cagggtaacctggtgcagggcgacgtgatcgtggccatcgatggggtcggcacggacggg
atgacccatctggaggcgcagaacaagatcaagatggccaactacaacctggcactcacc
atgaccaaggcgaagcgtaacgctgcgatgccgataccgagcgcctttcccatagtccct
caacaacagcctcaggtgaacggccacctgtcggcctgcagtgcctcccccgggcctgcg
ggggcagactctccgggcgggggtgcggcggcgagccccacccagaggaagcagtataac
aaccccatcggcctgtactcagaggagactctgagggagatggctgccattcaggccggg
ctgcctgtcggaggcccatccgaggtgacggcccccggagggaaggccaccatcnatcac
gcgcagtacaacacccccccatcagcatgtaactctcaggacgccatcatggacgtgatc
gcagggcagacgcagggcatggggcacgacgccggcctgaagcgacagtctgccgctggt
tacagcgtccagcgcagggtcggaggctccagccaatacagtcagcctcctgccatgcac
caggctccacaaggcccgcctccacagcagtaccagcagccaatgccgcaacagcaatac
cagcagccaatgcaacaacaacaataccagcagccaatgcaacaacagcaataccaacaa
ccaatgcaacaacaacaataccagcagccaatcccgcagcagtatcagcagccgcccacg
caacaggccccgcccactcagcagagctccattcagatccctcttggctccgcccctccc
aaggtggtcagcaccgcctgcatctacccctcccagccagctccaccccctgctgctcag
ccttgcccccccgctgctgcccccccccaaccacccgcggccccctccccctctaaccga
ccaccctgggtgtccgataccaactttgcagacaagttcgaccccagtaagatgaccacc
accatgaaggtgcagcagctgccccagggcgcccctcctccacctacatacaaccccaac
ccctcctcctccgcacctgcagctccaagccctgcccccgccacaccaacccccgccacc
ttcacacctgtggcgaggggcgtggctcagagggcggagagattcgccgccagcagccgc
acgcctctctgcgggtcctgcaacggcgtcatcaggggccccttcctgtcggccctgggc
cgctcctggcacccggaggagtttcactgccactactgccacatgtctctggcggacgcc
agcttcgtggaggagcagaacaacgtttactgcgagaactgctacgaggagttcttcngc
ccgacctgcgctcgctgcaacaccaagatcatgggggaagtgatgcacgccctgcggcag
acgtggcacaccacctgcttcgtgtgcgccgcctgcggtaaacccttcggaaacagcctc
ttccacatggaggacggggagccgtactgcgagaaagattatatatctctcttcagcaca
aagtgtcacggctgtgacttcccggtcgaagccggagataaattcatcgaggctctgggt
cacacctggcacgacacctgcttcgtgtgtgcggtttgcaacgtcaacctggagggccag
cctttctactcaaagaaagacaaacctctgtgcaagaagcacgctcacgccatcaacgtg
tag
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