Trematomus bernacchii (emerald rockcod): 117487275
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Entry
117487275 CDS
T09643
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04517
IgSF CAM signaling
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
117487275 (sptbn1)
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117487275 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tben04812
]
117487275 (sptbn1)
Cytoskeleton proteins [BR:
tben04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
117487275 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
117487275 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
BORCS6
PH_11
SOS1_NGEF_PH
DUF8074
Motif
Other DBs
NCBI-GeneID:
117487275
NCBI-ProteinID:
XP_033991859
LinkDB
All DBs
Position
Unknown
AA seq
2360 aa
AA seq
DB search
MELQSATASLPGPLSPTLDYPLSPSSGDPRPSSPLRGLSPSLSPGFSTTAAFNYNQLEGR
FKQLQDEREAVQKKTFTKWVNSHLSRVSCRITDLYMDLRDGRSLIKLLEVLSGERLPKPT
KGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQDISV
ETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDK
LKKSNAHHNLQNAFNLGEQHLGLYKLLDAEDISVDHPDEKSIITYVVTYYHYFSKMKALK
VEGKRIGKVLDNAIETEKMVEKYESLASDLLEWCEQTIIILNNRKFANSLVGVQQQLQAF
NTYRTAEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYTPREGKLISDINKAWERLEKAEH
ERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKH
EAIETDITAYEERVEAVISVAREMESENYHDIKRITARKDNVIRLWEYLLELLKARRLRL
EMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRV
KTVNRNAQKFADDMEGYKPCDPQVIRDRVAHMDFCYQELSQLASERRARLDESRRLWKFF
WEMAEEEGWIREKEQILSSEDYGKDLTGARRLLSQHKAFEDEMSGRAAHLQQTIRGGEEL
VANDHFGADKIKERIQDIQEQWAALERLSAVRKARLQEACNQHQFQADADDIDTWMLDVL
RIVSSVDVGHDEFSAQALVKKHKDVAEEIGSYRPVIEALHEQSRTLPPEKADSEEVQSRL
AGIEERYKEVVELTRLRKQALQDALALYRMLSEASACEVWIDEKEQWLNSMDIPEKLEDL
EVVQHRFESLEPEMNNQASRVAVVNQVARQLIHSVHPSEKEIKAKQDKLNTRWSAFRDLV
DLKKDSLSSALGVQNYHLECNETKSWIKEKTKLIESTQELGNDLAGVMALQRKLTGMERD
LAAIEDKLGDLGKEAERLASEHPEQSEAIKGRLDGITSVWDEMKDTMKNREESLGEASKL
QQFLRDVDDFQSWLSRTQTAIASEDMPNTLTEAEKLLTQHENIKNEIRNYEEDYQKMRDM
GEMVTQGQTDAQHMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAF
LNNQEYVLAHTEMPTTLQGAEAAIKKQEDFMTTLDANEEKISGVMDTGRRLVADGNINAE
RIQEKVDSIDDRHKKNRAAASELLARLKDNRDLQRFLQDCQELSLWINEKMLTAQDMSYD
EARNLHSKWLKHQAFMAELQSNKEWLDKIDKDGKALMAEKPETGAMVQEKLASLVKMWED
LESTTQTKAKCLFDANKAELFTQSCADLDKWLAGMDGQLQSDDYGKDLTSVNILLKKQQI
LESQVEVRQKEVGELQHQSQALSQEGKGSEEVDGQRISVETKLQAMQAPLQQRRENLMSS
REIHQFNRDVEDEILWVEERMPLATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRFDDI
FERSQHALRGGSPTAQLIQQRLAELQALWEQIQKETEKRHTRLSEAHEAQQYYFDAAEAE
AWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSGTSRGLVAAEHPD
SERIGMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHE
LGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQQADDLINTGHGDAATIAEWKDGLNE
AWADLLELIDTRTQILAASFELHKFYHDAKEILHRILDKHKKLPEELGRDQNTVETLQRM
HTTFEHDIQALGTQVRQLQEDAVRLQSAYAGDKADDIQKREGEVLEAWKSLLEAAEGRRA
KLVETGDKFRFFSMVRDLMLWMEDTIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDTRND
SFTSCIELGKALLARKHYAAEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFSRD
AGVAEAWLLGQDPYLCSREIGLNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELL
EVRRMQEEEEKRRQSPLTEAQPGDAQIREGEPVSQNGLPSDQESPRDGTAEGGEVVNGVS
EPSPTGSPGGVRKGKSSQAATLPAKTQQDAPPSQLEAFLHRKHEWEGHNKKASSRSWHNV
YCVINQQEMGFYKDQKSAAQGIPYHSEIPVTLKEAACEVALDYKKKKHVFKLKITDGNEY
LFQAKDEEEMSTWISAIASAMTVESSEVTPSSTSTPAPPARAQTLPASVATVTAATTAES
SPGKREKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atggagctccagagcgccaccgccagcctccccggccccctttcccccactttggactac
cccttgtccccctcgtcaggagaccctcgccccagcagccctctgaggggtctgagcccc
agcctcagccccgggttctccaccactgctgccttcaactacaaccagctggagggccgc
ttcaaacagctgcaagatgagcgtgaggcggtgcagaagaagaccttcactaagtgggtg
aactcccacctgtccagggtctcctgcaggatcacagacctgtacatggacctgagggac
gggcgctcgctcatcaagctgctggaggtcctgtccggagagaggctgcccaagcccacc
aaaggcaggatgcgtatccactgcctggagaacgtggacaaagcgctgcagttcctgaag
gagcagagggttcacctggagaacatgggctctcacgacatcgtggacgggaaccaccgc
ctggtgctcggcctcatctggaccatcatcctgcgcttccagatccaggacatcagcgtg
gagacggaggacaacaaggagaagaagtctgctaaagatgctctgctgctctggtgtcag
atgaagaccgcagggtatccaaacgtcaacatccacaacttcagcaccagctggagggac
ggcatggccttcaacgccctcatccacaaacacagacccgacctgatcgactttgacaag
ctgaagaaatcaaacgctcaccacaacttgcagaatgccttcaacctgggcgagcaacac
ctgggcctctacaagctgctggacgcagaggacatcagcgtggaccaccctgatgagaag
tccatcatcacgtacgtggtgacctactatcactacttctccaagatgaaggcgctgaag
gtggaggggaagaggatcggaaaggttctggacaacgccatcgagacggagaagatggtc
gagaagtacgagtctctggcctcagacctgctggagtggtgcgagcagaccatcatcatc
ctcaacaacaggaagttcgccaactctctggtgggcgtccagcagcagctgcaggccttc
aacacctaccggaccgccgagaagcccccgaagttcacagagaaaggaaacctggaggtt
cttctgttcaccatccagagtaaaatgagagccaacaaccagaaggtgtacactcctcga
gaggggaaactcatctccgacatcaacaaggcgtgggagcgtctggagaaggcggagcac
gagcgggagctggccctgcggacggagctgattcgccaggagaaactggagcagctcgcc
agacgcttcgaccgcaaagccgccatgagagagacgtggctgagcgagaaccagaggctc
gtctcacaggataactttggatttgacctgcaggcggtagaagctgccacaaagaaacat
gaagccatagaaacagacatcaccgcctacgaggagcgagttgaggcggtgatctcggtg
gcgagggagatggagagtgagaattaccacgacatcaaacgcatcacggccaggaaggac
aacgtgatccggctgtgggagtatctgctggagctgctgaaggcccgccggctgcgcctc
gagatgaacctcgggctgcagagggtcttccaggagatgctctacatcatggactggatg
gatgagatgaagatgctgctcctctcccaggactacgggaagcacctcctgggggtggag
gacctgctgcagaaacacgctctggtggaggccgacatcgccatccaggccgaccgcgtg
aagaccgtcaaccgcaacgcgcagaagttcgccgacgacatggagggctataagccgtgc
gaccctcaggtcatcagggatcgagtggctcacatggacttctgctaccaggagctgagt
cagctggcgtcggagcggagggctcggctcgacgagtcgcgccgcctctggaagttcttc
tgggagatggccgaagaggagggatggatcagggagaaggagcagatcctctcctccgag
gattatgggaaggatctgacgggagcgcggcgtctgctgagtcagcacaaagccttcgag
gacgagatgagcgggcgcgcggcccacctgcagcagaccatccgggggggcgaggagctg
gtggccaacgaccacttcggagcggacaagatcaaagagcgcatccaagacatccaggag
cagtgggcggctctggagcgtctctctgccgtccgtaaggctcgtctgcaggaagcctgc
aaccagcaccagttccaggcggatgcggacgacatcgacacgtggatgctggacgtgctg
cggatcgtctcctccgtggacgtgggccacgacgagttctccgcccaggctctggtgaag
aaacacaaggacgtggcggaggagatcggcagctaccggcccgtcatcgaggcgctgcac
gagcagtcgcgcacgctgccgccggagaaggccgactccgaggaggtgcagagccgtctg
gcgggcatcgaggagcgctacaaggaggtggtggagctgacgcggctcaggaagcaggcg
ctgcaggacgcgctcgctctctaccggatgctgagcgaggccagcgcctgcgaggtgtgg
atcgacgagaaggagcagtggctcaacagcatggacatccccgagaagctggaggacctg
gaggtggtgcagcaccggtttgagagtttggagccggagatgaacaaccaggcgtctcga
gttgccgtggtgaaccaggttgcccggcaactgatccacagcgtacaccccagtgagaag
gagatcaaagccaagcaggacaaactcaacaccaggtggagtgcgttcagggacctggtg
gatctgaagaaggacagcctgagctcggctctgggcgtccagaactatcacctggagtgc
aacgagaccaagtcctggatcaaggagaagaccaagttgatcgagtcgacccaggagctg
gggaacgacctggcgggcgtcatggcgctgcagaggaagctgacggggatggagagggac
ctcgccgccatcgaggacaaactgggggacctggggaaggaggcggaacgactggcctcc
gaacacccggagcagtctgaggccatcaagggccggctggacggcatcaccagcgtctgg
gacgagatgaaggacaccatgaagaaccgcgaggagtccctgggcgaggccagcaagctg
cagcagttcctgcgcgacgtggacgacttccagtcctggctgtcccgcacgcagacggcc
atcgcctccgaggacatgcccaacacgctgaccgaggccgagaagctgctgactcagcac
gagaacatcaagaacgagatccgcaactacgaggaggactaccagaagatgcgggacatg
ggcgagatggtgacgcagggccagacggacgcgcagcacatgttcctccggcagaggctg
caggcgctcgacaccggctggaacgagctgcacaagatgtgggagaaccggcagaacctg
ctgtcccagagccacgcctaccagctgttcctcagggacaccaagcaggccgaggccttc
ctcaacaaccaggagtacgtgctggcccacacggagatgcccaccacgctgcagggcgcc
gaggcggccatcaagaagcaggaggacttcatgaccacgctggacgccaacgaggagaag
atcagcggcgtgatggacaccgggcgccgcctggtcgccgacggcaacatcaacgccgag
cgcatccaggagaaagtggactccatcgacgacagacacaagaagaaccgagcggctgcc
agtgagctgctggcgaggctgaaggacaacagagacctgcagaggttcctgcaggactgc
caggagctgtccctgtggatcaacgagaagatgctgacggctcaggacatgtcgtacgac
gaggccaggaacctgcacagcaagtggctgaaacaccaggccttcatggccgagctgcag
tccaacaaggagtggctggacaagatcgacaaggacgggaaggctctgatggcggagaag
ccggagactggggccatggtgcaggagaagctggcgtccctggtgaagatgtgggaggat
ctggagtccaccacgcagaccaaagccaagtgtctgttcgacgccaacaaggcggagctg
ttcacgcagagctgcgccgacctggacaagtggctcgccggcatggacgggcagctgcag
tccgacgactacgggaaggacctgacctccgtcaacatcctgctgaagaagcagcagatc
ctggagagccaggtggaggtgcgtcagaaggaggtgggggagctgcagcaccagagccag
gcgctcagtcaggaggggaagggctcggaggaggtggacggccagaggatcagcgtggag
accaagctgcaggccatgcaggcgccgctgcagcagaggagagagaacctgatgtcctcc
agggaaatccaccagttcaacagagacgtggaggacgagatcctgtgggtggaggagagg
atgcctctggccacgtccaccgaccacggcaacaacctgcagaccgtacagctgctcatc
aagaagaaccagaccctgcagaaggagatccagggtcaccagccgcgcttcgacgacatc
ttcgagcgcagccagcacgcgctgcgggggggcagcccgaccgcccagctgatccagcag
cgcctcgccgagctgcaggcgctgtgggagcagatccagaaggagacggagaagagacac
acgcggctcagcgaggctcacgaggcgcagcagtactacttcgacgccgccgaggccgag
gcctggatgagcgagcaggagctctacatgatgtcagaggagaaggccaaggacgagcag
agttctgtggccatgctgaagaagcatcagatcctggagcaggcggtggaggattacgct
gagaccgtgcaccagctgtcgggcaccagccgcggcctggtggctgcagagcaccccgac
agtgagcgtatcggcatgcgtcagtctcaggtggataagctgtacgccgggctgaaggat
ctgtcggaggagcgccgggggaaactggacgagcgcctgcgtctcttccagctgaaccga
gaggtggacgacctggagcagtggatcgctgagagggaggtggtggccgggtcccacgag
ctgggccaggactacgagcacgtcaccatgctgcaggagcgcttcagagagttcgcccgc
gacacagggaacatcgggcaggagcgcgtggacacggtgaaccagcaggcggacgatctg
atcaacacgggccacggagacgccgccaccatcgcagagtggaaggacgggctgaacgag
gcgtgggccgacctgctggagctcatcgacacgcgcacgcagatcctcgccgcctccttc
gagctgcacaagttctaccacgacgccaaggagatcctccaccgcatcctggacaaacac
aagaagctgcccgaggagctgggccgcgaccagaacacggtggagacgctgcagaggatg
cacaccaccttcgaacacgacatccaggcgctggggacacaggtgcggcagctgcaggag
gacgccgtccgtctgcagtcggcttacgccggagacaaagccgacgacatccagaagaga
gaaggagaggtgctggaggcctggaagagcttgctggaggcggcggagggccggcgggcg
aagctggtggagaccggagacaagttccgcttcttcagcatggtgcgagacctgatgctg
tggatggaggacacgatccgcctgatcgaagcccaggagaaaccccgggacgtgtcgtct
gtggagctgctgatgaacaaccatcagggcatcaaggcggagatcgacacccgaaacgac
agcttcacgtcctgcatcgagcttgggaaagctctgctggccaggaagcactacgctgca
gaggagattaaagaaaagttgttacagttgacggacaagaggaaagacatgattgacaag
tgggaggacagatgggagtggctgagactggtcctggaggtgcaccagttctcccgggat
gcgggcgtggccgaggcctggctgctggggcaggacccctacctctgcagcagggagatc
gggctgaacgtggacgaggtcgagaagctcatcaaacgccacgaggccttcgagaagtcg
gccgccacctgggaggaacgcttctccgctctggagaggctgaccacgatggagttattg
gaagtgagaagaatgcaggaggaagaagagaagaggaggcagtcccccctgactgaggct
cagcccggagacgctcagatcagggagggagagccggtgtctcagaacgggctgccgtca
gaccaggagtctcccagggatgggaccgctgaaggtggagaggtggtgaatggagtgtcg
gagcccagccctacggggtctcccgggggcgttcgcaagggcaagagcagccaggcggca
acgctgccggcgaagacccagcaggacgcccccccctcccaactggaagcattcctgcac
cgcaaacacgagtgggaggggcacaacaagaaggcttcaagcaggtcgtggcacaacgtg
tactgtgtgataaaccagcaggagatgggcttctataaggaccagaagagcgcggctcag
ggcatcccgtaccacagcgagatccccgtcactctgaaggaggccgcctgcgaggtggcg
ctcgactacaagaagaagaaacacgtcttcaaactcaagattactgatgggaatgagtat
ctcttccaagccaaagacgaggaggagatgagcacgtggatatcggccatcgcgtcggcc
atgacggttgagagttcggaggtcacgcccagcagcaccagcacgcccgcaccccccgca
cgcgctcagacgctgcccgcctccgtcgccacggtgaccgccgccaccaccgcagagtcc
agcccggggaaacgagagaaagacaaggagaagcgcttcagtctgttcagcaagaagaaa
tag
DBGET
integrated database retrieval system
