Trematomus bernacchii (emerald rockcod): 117487275
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Entry
117487275 CDS
T09643
Symbol
sptbn1
Name
(RefSeq) spectrin beta chain, non-erythrocytic 1 isoform X1
KO
K06115
spectrin beta, non-erythrocytic 1/4/5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09142 Cell motility
04820 Cytoskeleton in muscle cells
117487275 (sptbn1)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tben04812
]
117487275 (sptbn1)
Cytoskeleton proteins [BR:
tben04812
]
Eukaryotic cytoskeleton proteins
Actin filaments / Microfilaments
Actin-binding proteins
Cross-linking proteins
117487275 (sptbn1)
Intermediate filaments
Intermediate filament-binding proteins
117487275 (sptbn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Spectrin
CH
PH_9
PH
BORCS6
PH_11
SOS1_NGEF_PH
Motif
Other DBs
NCBI-GeneID:
117487275
NCBI-ProteinID:
XP_033991859
LinkDB
All DBs
Position
Unknown
AA seq
2360 aa
AA seq
DB search
MELQSATASLPGPLSPTLDYPLSPSSGDPRPSSPLRGLSPSLSPGFSTTAAFNYNQLEGR
FKQLQDEREAVQKKTFTKWVNSHLSRVSCRITDLYMDLRDGRSLIKLLEVLSGERLPKPT
KGRMRIHCLENVDKALQFLKEQRVHLENMGSHDIVDGNHRLVLGLIWTIILRFQIQDISV
ETEDNKEKKSAKDALLLWCQMKTAGYPNVNIHNFSTSWRDGMAFNALIHKHRPDLIDFDK
LKKSNAHHNLQNAFNLGEQHLGLYKLLDAEDISVDHPDEKSIITYVVTYYHYFSKMKALK
VEGKRIGKVLDNAIETEKMVEKYESLASDLLEWCEQTIIILNNRKFANSLVGVQQQLQAF
NTYRTAEKPPKFTEKGNLEVLLFTIQSKMRANNQKVYTPREGKLISDINKAWERLEKAEH
ERELALRTELIRQEKLEQLARRFDRKAAMRETWLSENQRLVSQDNFGFDLQAVEAATKKH
EAIETDITAYEERVEAVISVAREMESENYHDIKRITARKDNVIRLWEYLLELLKARRLRL
EMNLGLQRVFQEMLYIMDWMDEMKMLLLSQDYGKHLLGVEDLLQKHALVEADIAIQADRV
KTVNRNAQKFADDMEGYKPCDPQVIRDRVAHMDFCYQELSQLASERRARLDESRRLWKFF
WEMAEEEGWIREKEQILSSEDYGKDLTGARRLLSQHKAFEDEMSGRAAHLQQTIRGGEEL
VANDHFGADKIKERIQDIQEQWAALERLSAVRKARLQEACNQHQFQADADDIDTWMLDVL
RIVSSVDVGHDEFSAQALVKKHKDVAEEIGSYRPVIEALHEQSRTLPPEKADSEEVQSRL
AGIEERYKEVVELTRLRKQALQDALALYRMLSEASACEVWIDEKEQWLNSMDIPEKLEDL
EVVQHRFESLEPEMNNQASRVAVVNQVARQLIHSVHPSEKEIKAKQDKLNTRWSAFRDLV
DLKKDSLSSALGVQNYHLECNETKSWIKEKTKLIESTQELGNDLAGVMALQRKLTGMERD
LAAIEDKLGDLGKEAERLASEHPEQSEAIKGRLDGITSVWDEMKDTMKNREESLGEASKL
QQFLRDVDDFQSWLSRTQTAIASEDMPNTLTEAEKLLTQHENIKNEIRNYEEDYQKMRDM
GEMVTQGQTDAQHMFLRQRLQALDTGWNELHKMWENRQNLLSQSHAYQLFLRDTKQAEAF
LNNQEYVLAHTEMPTTLQGAEAAIKKQEDFMTTLDANEEKISGVMDTGRRLVADGNINAE
RIQEKVDSIDDRHKKNRAAASELLARLKDNRDLQRFLQDCQELSLWINEKMLTAQDMSYD
EARNLHSKWLKHQAFMAELQSNKEWLDKIDKDGKALMAEKPETGAMVQEKLASLVKMWED
LESTTQTKAKCLFDANKAELFTQSCADLDKWLAGMDGQLQSDDYGKDLTSVNILLKKQQI
LESQVEVRQKEVGELQHQSQALSQEGKGSEEVDGQRISVETKLQAMQAPLQQRRENLMSS
REIHQFNRDVEDEILWVEERMPLATSTDHGNNLQTVQLLIKKNQTLQKEIQGHQPRFDDI
FERSQHALRGGSPTAQLIQQRLAELQALWEQIQKETEKRHTRLSEAHEAQQYYFDAAEAE
AWMSEQELYMMSEEKAKDEQSSVAMLKKHQILEQAVEDYAETVHQLSGTSRGLVAAEHPD
SERIGMRQSQVDKLYAGLKDLSEERRGKLDERLRLFQLNREVDDLEQWIAEREVVAGSHE
LGQDYEHVTMLQERFREFARDTGNIGQERVDTVNQQADDLINTGHGDAATIAEWKDGLNE
AWADLLELIDTRTQILAASFELHKFYHDAKEILHRILDKHKKLPEELGRDQNTVETLQRM
HTTFEHDIQALGTQVRQLQEDAVRLQSAYAGDKADDIQKREGEVLEAWKSLLEAAEGRRA
KLVETGDKFRFFSMVRDLMLWMEDTIRLIEAQEKPRDVSSVELLMNNHQGIKAEIDTRND
SFTSCIELGKALLARKHYAAEEIKEKLLQLTDKRKDMIDKWEDRWEWLRLVLEVHQFSRD
AGVAEAWLLGQDPYLCSREIGLNVDEVEKLIKRHEAFEKSAATWEERFSALERLTTMELL
EVRRMQEEEEKRRQSPLTEAQPGDAQIREGEPVSQNGLPSDQESPRDGTAEGGEVVNGVS
EPSPTGSPGGVRKGKSSQAATLPAKTQQDAPPSQLEAFLHRKHEWEGHNKKASSRSWHNV
YCVINQQEMGFYKDQKSAAQGIPYHSEIPVTLKEAACEVALDYKKKKHVFKLKITDGNEY
LFQAKDEEEMSTWISAIASAMTVESSEVTPSSTSTPAPPARAQTLPASVATVTAATTAES
SPGKREKDKEKRFSLFSKKK
NT seq
7083 nt
NT seq
+upstream
nt +downstream
nt
atggagctccagagcgccaccgccagcctccccggccccctttcccccactttggactac
cccttgtccccctcgtcaggagaccctcgccccagcagccctctgaggggtctgagcccc
agcctcagccccgggttctccaccactgctgccttcaactacaaccagctggagggccgc
ttcaaacagctgcaagatgagcgtgaggcggtgcagaagaagaccttcactaagtgggtg
aactcccacctgtccagggtctcctgcaggatcacagacctgtacatggacctgagggac
gggcgctcgctcatcaagctgctggaggtcctgtccggagagaggctgcccaagcccacc
aaaggcaggatgcgtatccactgcctggagaacgtggacaaagcgctgcagttcctgaag
gagcagagggttcacctggagaacatgggctctcacgacatcgtggacgggaaccaccgc
ctggtgctcggcctcatctggaccatcatcctgcgcttccagatccaggacatcagcgtg
gagacggaggacaacaaggagaagaagtctgctaaagatgctctgctgctctggtgtcag
atgaagaccgcagggtatccaaacgtcaacatccacaacttcagcaccagctggagggac
ggcatggccttcaacgccctcatccacaaacacagacccgacctgatcgactttgacaag
ctgaagaaatcaaacgctcaccacaacttgcagaatgccttcaacctgggcgagcaacac
ctgggcctctacaagctgctggacgcagaggacatcagcgtggaccaccctgatgagaag
tccatcatcacgtacgtggtgacctactatcactacttctccaagatgaaggcgctgaag
gtggaggggaagaggatcggaaaggttctggacaacgccatcgagacggagaagatggtc
gagaagtacgagtctctggcctcagacctgctggagtggtgcgagcagaccatcatcatc
ctcaacaacaggaagttcgccaactctctggtgggcgtccagcagcagctgcaggccttc
aacacctaccggaccgccgagaagcccccgaagttcacagagaaaggaaacctggaggtt
cttctgttcaccatccagagtaaaatgagagccaacaaccagaaggtgtacactcctcga
gaggggaaactcatctccgacatcaacaaggcgtgggagcgtctggagaaggcggagcac
gagcgggagctggccctgcggacggagctgattcgccaggagaaactggagcagctcgcc
agacgcttcgaccgcaaagccgccatgagagagacgtggctgagcgagaaccagaggctc
gtctcacaggataactttggatttgacctgcaggcggtagaagctgccacaaagaaacat
gaagccatagaaacagacatcaccgcctacgaggagcgagttgaggcggtgatctcggtg
gcgagggagatggagagtgagaattaccacgacatcaaacgcatcacggccaggaaggac
aacgtgatccggctgtgggagtatctgctggagctgctgaaggcccgccggctgcgcctc
gagatgaacctcgggctgcagagggtcttccaggagatgctctacatcatggactggatg
gatgagatgaagatgctgctcctctcccaggactacgggaagcacctcctgggggtggag
gacctgctgcagaaacacgctctggtggaggccgacatcgccatccaggccgaccgcgtg
aagaccgtcaaccgcaacgcgcagaagttcgccgacgacatggagggctataagccgtgc
gaccctcaggtcatcagggatcgagtggctcacatggacttctgctaccaggagctgagt
cagctggcgtcggagcggagggctcggctcgacgagtcgcgccgcctctggaagttcttc
tgggagatggccgaagaggagggatggatcagggagaaggagcagatcctctcctccgag
gattatgggaaggatctgacgggagcgcggcgtctgctgagtcagcacaaagccttcgag
gacgagatgagcgggcgcgcggcccacctgcagcagaccatccgggggggcgaggagctg
gtggccaacgaccacttcggagcggacaagatcaaagagcgcatccaagacatccaggag
cagtgggcggctctggagcgtctctctgccgtccgtaaggctcgtctgcaggaagcctgc
aaccagcaccagttccaggcggatgcggacgacatcgacacgtggatgctggacgtgctg
cggatcgtctcctccgtggacgtgggccacgacgagttctccgcccaggctctggtgaag
aaacacaaggacgtggcggaggagatcggcagctaccggcccgtcatcgaggcgctgcac
gagcagtcgcgcacgctgccgccggagaaggccgactccgaggaggtgcagagccgtctg
gcgggcatcgaggagcgctacaaggaggtggtggagctgacgcggctcaggaagcaggcg
ctgcaggacgcgctcgctctctaccggatgctgagcgaggccagcgcctgcgaggtgtgg
atcgacgagaaggagcagtggctcaacagcatggacatccccgagaagctggaggacctg
gaggtggtgcagcaccggtttgagagtttggagccggagatgaacaaccaggcgtctcga
gttgccgtggtgaaccaggttgcccggcaactgatccacagcgtacaccccagtgagaag
gagatcaaagccaagcaggacaaactcaacaccaggtggagtgcgttcagggacctggtg
gatctgaagaaggacagcctgagctcggctctgggcgtccagaactatcacctggagtgc
aacgagaccaagtcctggatcaaggagaagaccaagttgatcgagtcgacccaggagctg
gggaacgacctggcgggcgtcatggcgctgcagaggaagctgacggggatggagagggac
ctcgccgccatcgaggacaaactgggggacctggggaaggaggcggaacgactggcctcc
gaacacccggagcagtctgaggccatcaagggccggctggacggcatcaccagcgtctgg
gacgagatgaaggacaccatgaagaaccgcgaggagtccctgggcgaggccagcaagctg
cagcagttcctgcgcgacgtggacgacttccagtcctggctgtcccgcacgcagacggcc
atcgcctccgaggacatgcccaacacgctgaccgaggccgagaagctgctgactcagcac
gagaacatcaagaacgagatccgcaactacgaggaggactaccagaagatgcgggacatg
ggcgagatggtgacgcagggccagacggacgcgcagcacatgttcctccggcagaggctg
caggcgctcgacaccggctggaacgagctgcacaagatgtgggagaaccggcagaacctg
ctgtcccagagccacgcctaccagctgttcctcagggacaccaagcaggccgaggccttc
ctcaacaaccaggagtacgtgctggcccacacggagatgcccaccacgctgcagggcgcc
gaggcggccatcaagaagcaggaggacttcatgaccacgctggacgccaacgaggagaag
atcagcggcgtgatggacaccgggcgccgcctggtcgccgacggcaacatcaacgccgag
cgcatccaggagaaagtggactccatcgacgacagacacaagaagaaccgagcggctgcc
agtgagctgctggcgaggctgaaggacaacagagacctgcagaggttcctgcaggactgc
caggagctgtccctgtggatcaacgagaagatgctgacggctcaggacatgtcgtacgac
gaggccaggaacctgcacagcaagtggctgaaacaccaggccttcatggccgagctgcag
tccaacaaggagtggctggacaagatcgacaaggacgggaaggctctgatggcggagaag
ccggagactggggccatggtgcaggagaagctggcgtccctggtgaagatgtgggaggat
ctggagtccaccacgcagaccaaagccaagtgtctgttcgacgccaacaaggcggagctg
ttcacgcagagctgcgccgacctggacaagtggctcgccggcatggacgggcagctgcag
tccgacgactacgggaaggacctgacctccgtcaacatcctgctgaagaagcagcagatc
ctggagagccaggtggaggtgcgtcagaaggaggtgggggagctgcagcaccagagccag
gcgctcagtcaggaggggaagggctcggaggaggtggacggccagaggatcagcgtggag
accaagctgcaggccatgcaggcgccgctgcagcagaggagagagaacctgatgtcctcc
agggaaatccaccagttcaacagagacgtggaggacgagatcctgtgggtggaggagagg
atgcctctggccacgtccaccgaccacggcaacaacctgcagaccgtacagctgctcatc
aagaagaaccagaccctgcagaaggagatccagggtcaccagccgcgcttcgacgacatc
ttcgagcgcagccagcacgcgctgcgggggggcagcccgaccgcccagctgatccagcag
cgcctcgccgagctgcaggcgctgtgggagcagatccagaaggagacggagaagagacac
acgcggctcagcgaggctcacgaggcgcagcagtactacttcgacgccgccgaggccgag
gcctggatgagcgagcaggagctctacatgatgtcagaggagaaggccaaggacgagcag
agttctgtggccatgctgaagaagcatcagatcctggagcaggcggtggaggattacgct
gagaccgtgcaccagctgtcgggcaccagccgcggcctggtggctgcagagcaccccgac
agtgagcgtatcggcatgcgtcagtctcaggtggataagctgtacgccgggctgaaggat
ctgtcggaggagcgccgggggaaactggacgagcgcctgcgtctcttccagctgaaccga
gaggtggacgacctggagcagtggatcgctgagagggaggtggtggccgggtcccacgag
ctgggccaggactacgagcacgtcaccatgctgcaggagcgcttcagagagttcgcccgc
gacacagggaacatcgggcaggagcgcgtggacacggtgaaccagcaggcggacgatctg
atcaacacgggccacggagacgccgccaccatcgcagagtggaaggacgggctgaacgag
gcgtgggccgacctgctggagctcatcgacacgcgcacgcagatcctcgccgcctccttc
gagctgcacaagttctaccacgacgccaaggagatcctccaccgcatcctggacaaacac
aagaagctgcccgaggagctgggccgcgaccagaacacggtggagacgctgcagaggatg
cacaccaccttcgaacacgacatccaggcgctggggacacaggtgcggcagctgcaggag
gacgccgtccgtctgcagtcggcttacgccggagacaaagccgacgacatccagaagaga
gaaggagaggtgctggaggcctggaagagcttgctggaggcggcggagggccggcgggcg
aagctggtggagaccggagacaagttccgcttcttcagcatggtgcgagacctgatgctg
tggatggaggacacgatccgcctgatcgaagcccaggagaaaccccgggacgtgtcgtct
gtggagctgctgatgaacaaccatcagggcatcaaggcggagatcgacacccgaaacgac
agcttcacgtcctgcatcgagcttgggaaagctctgctggccaggaagcactacgctgca
gaggagattaaagaaaagttgttacagttgacggacaagaggaaagacatgattgacaag
tgggaggacagatgggagtggctgagactggtcctggaggtgcaccagttctcccgggat
gcgggcgtggccgaggcctggctgctggggcaggacccctacctctgcagcagggagatc
gggctgaacgtggacgaggtcgagaagctcatcaaacgccacgaggccttcgagaagtcg
gccgccacctgggaggaacgcttctccgctctggagaggctgaccacgatggagttattg
gaagtgagaagaatgcaggaggaagaagagaagaggaggcagtcccccctgactgaggct
cagcccggagacgctcagatcagggagggagagccggtgtctcagaacgggctgccgtca
gaccaggagtctcccagggatgggaccgctgaaggtggagaggtggtgaatggagtgtcg
gagcccagccctacggggtctcccgggggcgttcgcaagggcaagagcagccaggcggca
acgctgccggcgaagacccagcaggacgcccccccctcccaactggaagcattcctgcac
cgcaaacacgagtgggaggggcacaacaagaaggcttcaagcaggtcgtggcacaacgtg
tactgtgtgataaaccagcaggagatgggcttctataaggaccagaagagcgcggctcag
ggcatcccgtaccacagcgagatccccgtcactctgaaggaggccgcctgcgaggtggcg
ctcgactacaagaagaagaaacacgtcttcaaactcaagattactgatgggaatgagtat
ctcttccaagccaaagacgaggaggagatgagcacgtggatatcggccatcgcgtcggcc
atgacggttgagagttcggaggtcacgcccagcagcaccagcacgcccgcaccccccgca
cgcgctcagacgctgcccgcctccgtcgccacggtgaccgccgccaccaccgcagagtcc
agcccggggaaacgagagaaagacaaggagaagcgcttcagtctgttcagcaagaagaaa
tag
DBGET
integrated database retrieval system
