Trematomus bernacchii (emerald rockcod): 117487342
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Entry
117487342 CDS
T09643
Symbol
pcdh11
Name
(RefSeq) LOW QUALITY PROTEIN: protocadherin-11 X-linked
KO
K16498
protocadherin delta 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117487342 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117487342 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117487342 (pcdh11)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117487342 (pcdh11)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117487342 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
117487342
NCBI-ProteinID:
XP_033991900
LinkDB
All DBs
Position
Unknown
AA seq
1043 aa
AA seq
DB search
MDLPSQAHVLVVLLTCVVLVCRAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTSHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDINDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPVFKDTELEVSVPENAPMGTSVAQLHASDADLGSNAQIHFAFSNQISASTKRHF
SIDSSTGLITVRQSLDREVTPVHKLIVLASDGSSTPSRATVIVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLFGKVACYTEHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGHNAELIYTLGPDAPDGFNVDRRSGILSVGKRLDREKQERYSFTV
IARDNGSASLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLYGTVGLITVTDADAG
DNSVITLSVLNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDAGQPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTITPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFSIDKATGNITLQEKIVTADQGLHRLVVKVKDLGQPESLHAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGEGEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQDNRQIKKKKKRKKRSPKSLLLNFVTIDESKPDDA
THEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTTGQISTRQETSL
KPPHYGTLCGTGTARSHRIKINL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggacttaccaagtcaggctcatgtgctggtggtcttgctcacctgtgtggtcttggta
tgccgggcccaggagcgggactacacggtgaaggaggagcagccagagaacgtccgtatc
gggaacctgcgcaaggacttggatctcaacctggacccaaacatcaggctatcctcaccg
ctgcagttcaagcctgtgtacaagacgggtgacgtgcctttggtgagggtggaggccaac
acgggggagatctttaccaccagtcacagaattgaccgggagaagctgtgctcaggagtc
ttcgctgagaaacgctgctactatgagatcgaggtggccgttctgcctgatgagatcttc
cgattggtcaagatccgcttcctgatcgaggatataaatgacaacgcaccgcttttccag
tccacggttataaacatctccatcccagagaacacagcgatcaacacccgatacccggtg
ccctcagcatttgaccctgatgtagggatcaatgggattcaacattatgaacttgtcaag
agtgtcagcgagtttggcttagacatcatagagactcctgaaggggacaagtggccgcag
ctcattgttcaacagaacctagatcgcgagcagaaggacaccttcgttatgaagataaag
gtagaggatggtggcaacccccccaagtccagcactgccatcctgcaagtcaccatctcc
gatgttaacgataatcgtcccgtcttcaaagacaccgagctggaggtctcggtgccagag
aatgcccccatgggaacatcggttgctcagctgcatgcctcagacgcagaccttggttcc
aacgcgcagatccacttcgccttcagcaaccagatctctgcctcaaccaaacgtcacttt
tccatcgacagctcaacaggactgatcactgtgaggcagtctctggacagggaggtaact
cctgttcacaaactcatcgtgcttgccagtgatggcagctctactccctccagagccaca
gtgattgttaatgtaacagatgttaatgacaatgttccctccatagacactcgctacatt
atcaacctggttaatgggactgttctgctatctgaaaatgcacctctcaatacaaaaata
gccctcatcactgttactgacaaggatgcagatctttttggcaaagtagcttgttacact
gaacatgatgttccttttcggttgaagcctgtctttaatgatcaattcttactagagaca
gcagcccccctagattatgagacgactcgagaatatgcaattaagatagtggcctcggat
agggggacgcctcctttgaacacttcagctatggttttaattaaaatcaaggatgagaat
gacaacgcacccatctttccccagccggaaatccaactttccatcccggagaacaatgac
ccctctacacagttaataaaaatcagcgccactgacgcagacagcggacataatgctgag
cttatttatactcttggccctgatgcacctgacgggtttaacgtagacagacggtcagga
attctctctgttggcaaacgactggacagagagaagcaggagaggtactcattcactgtc
atagcgagggacaatggctctgcttccctgcagagcaatgtcaccgtcaggctaatcgtc
caggaccttaatgacaacagcccagctttcacacaccccgagtacaacttctatgtgcct
gagaacctgcctctctatggaactgtgggcttaatcacagtgacggatgcagatgcggga
gataattcggttataaccctgtctgttttgaacggaaaagataatttcatcatcgacccc
caaaccggtgttatcaaacccaatataacgtttgatagggagcagcaaagctcctacact
tttatggttaaggcagttgatgcggggcaacctccaagttcctcctacgccaaggtcact
atcaatgtagtcgatgtgaacgacaatcgccctgtgttcgtgatcccatcctccaattac
tcatatgacctagtgcgaaccaccatcacccctggcgctgtggtcaccagagtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcagtacagcattatcagcagcatcatc
atcacatctagggtctcccctcgaggtcttttctccatcgacaaagcaacgggtaacata
acactgcaggagaaaatagtgacagctgatcagggactgcataggctggtagtcaaggtc
aaagatctaggtcagcctgagtcattacatgctattgcgcttattcacttgtttgtcaat
gacactgtgtcaaatgctacctttatccaagagcagctgagaaaaagtatggagacacct
ttggatcgtaacataggggaaggtgaggtaacacctcaagccaacggatatgttattgtt
gtcattgcaatcatagcagggaccatgactgtcatcttggtgatatttgtgactgccttg
gtgcgctgccgacagacacccagacataaagtggtacaaaagggcaagcagagtggcgag
tgggtgtcccccaaccaagacaaccgtcagatcaagaagaagaagaagagaaagaagcga
tccccaaagagcctcctcttgaactttgtgacaatagatgaatccaagcctgacgacgcc
acccatgagcatgttaatggtacacttgatctccctgtggagctggaggagcaaaccatg
gggaagtacaactgggccaccacgcccaccaccttcaaacccgacagcccagatttagcc
aaacattacaagtctgcgtcccctcagcctacatttcaaatcaaacctgagactccagtg
gccccaaagaagcaccatgtgatccaggagctccccttggacaacacgttcgtggtgggc
tgtgactcactctccaagtgctcatcgactagctccgacccgtacagtgtctcagagtgc
agctgtcaggggggattcaagactacggggcaaatctccacccgacaggagacgtcactg
aaaccaccacactatggcacactctgtggcacaggtacagctcgctcccacaggattaaa
atcaatctctag
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