Trematomus bernacchii (emerald rockcod): 117487691
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Entry
117487691 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: interferon-induced very large GTPase 1-like
Organism
tben
Trematomus bernacchii (emerald rockcod)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RHD3_GTPase
Dynamin_N
GBP
MMR_HSR1
HEAT_IPO9_c
AAA_16
P4Ha_N
DUF7660
Motif
Other DBs
NCBI-GeneID:
117487691
NCBI-ProteinID:
XP_033992226
LinkDB
All DBs
Position
Unknown
AA seq
1520 aa
AA seq
DB search
MTFSNLKPGECYFLQVSTKLRNGRISRPTVTSANTKPTPPVQVTVDQVSRESSPRDTISK
PTKTSAQTEPHLESFLEELGLDHHYKEKLSLSTLLRIDKKTITDEPAKSLFLCSDGFVQQ
EMALKMSMCQFSVPLLLPNCDTKQCTLMLWAMRDIVKKYRPQSLSESRGFIEERIVVSEL
PMISFVRLGECSLSKSEILNKLLSNSQQYHETFVHSNMEGGDSPRRISNGLVEMTWYLPC
GNKNMDVFSEPVAVANLRGDIASFETQFAFLCQTSAAVFVFFDALDSECELLTNQNHKAQ
IFLVGNRQSKDFKLDAVKKVSTKLSLKKSNIILKEKHINDAKFVKDLRETVSNVIENTKV
KMGIEKMADVAHEHGICVDEDSPECQTAKKNADTITAEIQDILKYKEVQLPLQGQIWKEL
TCLEKEELRLKNVGEEKKKKKKKIERLYFLKWMRMKLDNVSREKLFDLREQYKEKRKNPE
NKEEIKKIDXNSSLGTEHFFREMGQIYEASLSLPETDPARQQLQHLPKLCAELMLDGFPL
ELVDGEASNIPLRWVTDVLSQLNDLVSPKNKILVVTVLGVQSTGKSTLLNTMFGVQFAVS
SGRCTRGAFMLLIQINEDVRKDFNCDFMVIIDTEGLKSPELAQLDNSHEHDNELATLVVG
LSDITIINVAMENSTEMKDILQIVVHAFLRMKEEGKKKPKCQFVHQNVSDVSAHDKNLRD
RELLLQQLNEMTQAAAKMEKKKENPSFTDVMEYSPDTGNWYIPGLWNGNPPMAPVNAGYS
EAVYELKKNIITILGSCGSSANNILEFTEWMKSLWTAVKHENFIFSFRNSLVADAYMRLC
TEFNRWEWDFKKKMFTLVTQAETIISNFGTAADKYNKSDMRELVELLKNEYLTELSEWET
KLLENLDQYFKQTEGHVYLVEGYREEFKNSAKSLRREMESSVFNQLTAAAAIRQGMTELD
KIKEDHTKDLEGRVCALIEECRKKKVKMTEKELNKEFDKMWTETVKELTFKEMKVDDIFT
SVSHRLRTNLSTKGGHASDLLSQKSLKECGQGPFKYKVEGLLNKGVDTFKQWFNMPGNAK
AVQQTADSIITVCSQMVSEKMKRKSNYHDTYIDEILKKIDERLENNQESDITFEVSLKQH
ICGDAARRFQKMHEDFIQKKDPYICLNENKGKFLADFKDVFHNVDQCQKKAEEFTNRCLK
PAVEHFVNRSLGPDIIGEMRTSEEFSTRMSFQYSLLLELLSEDDFKKYQSFICSYEKYVK
KWILNKILERFSDGSTMFEEQHLQSCVNRINNAIQKAKTEKSGNVKSFVEDVCQELGNKL
VISQGALGAFMTLNNANQEQFAHRLTECVKEMAQTLREKFKKTNIQTKLQSLHVNPQNEL
FNTLIGCGKQCPFCKAPCEAGATAHTEHFTSLHRPEGLGQCRWSNTEKLCIDICSSLVNS
DISFHCSAXHPYKRYKEIYPDWKIPPDASLQASDYWKYVLAKFNDQFAAAFKAKPADIPL
AWKLITPEQAEASLKESFHI
NT seq
4563 nt
NT seq
+upstream
nt +downstream
nt
atgacattcagcaacctgaagccaggggagtgttactttctacaggtttctacaaaactt
cggaatggaagaataagcaggccaactgtaacatctgccaacacaaagcctacccctcct
gtgcaggttacagtcgatcaggtcagcagggagtcatcacctcgggacacaataagcaag
cctactaaaacctctgcccagacagagccacaccttgagagttttttggaggaactgggg
ttggatcaccactacaaagagaagctatccctaagcacacttctaaggattgacaagaag
accattactgatgaacctgccaagtctctcttcctgtgctctgatggttttgtacagcag
gaaatggccctcaaaatgtccatgtgtcagttttccgtgcctctgttgcttcccaactgt
gacacaaagcagtgcacactcatgctttgggccatgagagacattgttaaaaagtacaga
cctcagtcactttcagagtccaggggatttattgaagagagaattgttgtctctgaactt
ccaatgatatcttttgtgagactgggtgagtgctccttgtccaagtcagagatcctcaat
aagcttctgagcaattctcagcagtaccatgagacctttgttcactccaacatggagggt
ggtgacagtccaaggagaatatccaatggattggttgaaatgacttggtacctcccttgt
gggaacaaaaacatggatgtcttcagcgagccagttgctgtagctaaccttcgtggggac
attgcttcatttgaaacacaatttgctttcttgtgtcagacatctgcagcagtttttgtg
ttctttgatgctttggactctgagtgtgagctgctaaccaaccaaaaccacaaggcccag
atcttcttggtgggtaaccgtcaaagcaaagatttcaaattagatgctgtaaaaaaggta
tcaaccaagttaagcttaaaaaagagcaacatcattttgaaagaaaagcacataaacgat
gcaaaatttgtcaaagatttgcgtgaaacagtcagcaatgtaattgaaaacacaaaggtg
aagatgggaattgagaagatggctgacgttgcccatgaacatggaatctgtgttgatgaa
gactctccagagtgccagactgccaagaaaaatgcagataccatcactgcagaaattcaa
gacattcttaaatacaaagaagttcagcttcccttgcaaggccaaatatggaaggagctt
acttgcttagagaaggaagaattgcgacttaagaatgttggggaggagaagaagaagaag
aagaagaagatagagaggttatatttcctgaaatggatgcgaatgaaactcgataacgtg
tctcgggaaaaactctttgacctcagggagcagtacaaagaaaaacgcaaaaaccctgag
aacaaagaggagatcaagaaaatagacnncaacagctcattagggactgaacacttcttc
cgtgaaatggggcagatctatgaagcttccctttcccttcctgaaacagacccagcacgt
caacaactacagcatctccccaagctatgtgctgagttaatgcttgatggatttccactt
gagcttgtagatggagaagcatccaacatacctctcagatgggtgactgacgttctctct
cagctcaatgacttggtgtctcctaagaacaagatcctggtagtcacagttcttggagtt
cagagcacaggaaagtccactctcctcaacaccatgtttggagtgcagtttgcagtcagc
agtggtcgatgcactcgaggggcctttatgttgctgattcaaatcaatgaagatgtcaga
aaagacttcaactgtgacttcatggtgatcattgatactgagggcttaaagtcaccagag
ctcgcacaactggacaatagccacgagcatgacaatgagcttgcaacacttgttgtgggg
ctgagtgatatcaccatcatcaatgttgcaatggagaattcaacagaaatgaaggacatc
ctacagatagttgtacacgctttcctcaggatgaaagaggagggcaaaaagaagcccaaa
tgtcagtttgttcaccagaatgtgtccgatgtttcagcccatgacaagaacctgcgagac
agggaactgctcctgcagcagttaaacgagatgacccaggcagcagccaaaatggaaaag
aaaaaggagaacccgagcttcactgatgtgatggagtacagtccagacactggaaactgg
tacattcctggactctggaatggaaacccaccgatggcaccagtcaatgcaggctacagc
gaggctgtctatgagctcaagaagaacataatcaccattttgggaagttgtggatcatca
gctaataatatcttggagtttacagagtggatgaagagcctgtggactgcagtaaaacat
gaaaacttcatcttcagtttcagaaacagtctcgtggctgatgcatacatgaggctatgc
acagaattcaacagatgggaatgggacttcaaaaaaaaaatgttcacattggttacacaa
gctgaaacaataatctccaattttggtacagctgctgataaatataacaaatctgacatg
agagaacttgtcgagctattgaaaaatgaatatttgactgagctgtctgaatgggaaaca
aagcttctggaaaatctggaccagtacttcaagcaaacagagggtcatgtctatcttgtt
gaaggatacagagaggaatttaaaaacagtgctaagagccttcgacgagaaatggaaagc
tctgtgtttaatcaactcacagcagcagccgccatcagacaggggatgacagaacttgat
aaaatcaaggaggaccacacaaaggacttagagggcagagtttgtgcattgattgaagaa
tgtaggaagaaaaaagtcaagatgacagagaaagagctgaacaaagaatttgacaagatg
tggactgaaacagtgaaggaactaacctttaaagaaatgaaggttgatgacattttcacc
agtgtgtctcaccgcctgagaacaaatctatcaaccaagggaggtcatgcaagtgatttg
ttaagtcaaaaaagcctgaaagaatgtggacaggggccttttaaatataaagttgaagga
ctcttaaataaaggtgtagacacatttaaacagtggtttaacatgccaggtaatgcaaag
gctgtacaacaaacagctgacagcatcattacagtttgctcacagatggtgagtgaaaaa
atgaaaagaaagagtaattaccatgatacctacatcgatgagattttaaaaaagattgat
gagaggctggaaaacaatcaggaatcagacatcacttttgaagtctctctgaaacagcac
atctgtggagacgcagccagaaggtttcagaaaatgcatgaagatttcatccaaaagaag
gatccctacatatgtctgaatgaaaacaaaggaaagtttcttgctgattttaaagatgtg
ttccataatgtagaccagtgccagaagaaggcagaagaattcacaaaccgatgcttgaag
cctgcagtcgaacactttgtcaaccgttccctgggtcctgatatcattggtgaaatgagg
acaagtgaggagttcagcacaagaatgtccttccagtattcacttttactggaactgctc
tcagaggatgactttaaaaagtaccagagctttatttgttcctatgagaaatatgtaaag
aaatggatactcaacaaaatattggaacgcttctcagatgggtctacgatgtttgaggaa
caacatctccagtcatgtgtcaacagaataaataatgctatccagaaagctaaaacagaa
aagagtggcaacgtaaagtcatttgttgaagatgtctgtcaggaacttggtaacaaactg
gtcatttcccagggtgctcttggggcattcatgaccctgaacaatgccaaccaggaacag
tttgctcacaggctcactgagtgtgtgaaggagatggcacaaactcttagagagaagttt
aagaaaacaaacatccaaactaaactacagagccttcatgtgaatcctcagaacgagctt
ttcaacacactgattggctgtggtaaacagtgtccgttctgcaaagcgccctgtgaggca
ggagcaacagcccacactgagcacttcacttcacttcatcgaccagagggtctgggtcaa
tgcagatggagtaatacagaaaaactttgcattgacatatgctcttccctagtaaacagt
gacatttcttttcactgcagtgctnnacacccttacaagcgctacaaagaaatctatccg
gactggaaaatcccaccagatgcaagcctccaggcatcagactactggaaatatgtactg
gcaaagttcaatgatcagtttgcagcagcattcaaggcaaagcctgctgatattccctta
gcttggaaacttatcacacctgagcaagcagaggcaagcctcaaagagtcatttcatatc
taa
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