Trematomus bernacchii (emerald rockcod): 117487787
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Entry
117487787 CDS
T09643
Symbol
gigyf1a
Name
(RefSeq) LOW QUALITY PROTEIN: GRB10-interacting GYF protein 1
KO
K18730
PERQ amino acid-rich with GYF domain-containing protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117487787 (gigyf1a)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
117487787 (gigyf1a)
Surveillance factors
Other surveillance factors
117487787 (gigyf1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
GYF
GYF_2
Motif
Other DBs
NCBI-GeneID:
117487787
NCBI-ProteinID:
XP_033992343
LinkDB
All DBs
Position
Unknown
AA seq
1131 aa
AA seq
DB search
MTAETLNFGPEWLRALSSGGSVTSPPPSPAMPKYKLAEYRYGREEMLALYIKDNKVPEDM
QDKEFAAILQDEPMQPLALVPLTEEEQRNFSMSVNSVAVLRLMGKGVGATAPAGVVRGRG
APRGGRGRGRGEGGFYQRSIEEPEVGFGRGVREIHRSQSWDDRGERRFEKPVRREVGRPG
FEEPVVPVVPGRKDFTRADSDNWRILREEQQEEEDAAAGAGAGAGAGVVVVEPGTNWRLA
GVRRDDGGPRSAGWREHTGPGEGRRRKFDFDFRDADGHGGGRRREGLDDGDGLPEWCTDE
EDGEMGTFDSSGAFMALKKGDKDTILEEEFDFKGIEDEEDEECYADIERNSAEEDKESKE
AGSAVRDCETKPASPSSSPPALQHCTPPSVEHRPSNAGLLVDNPQLNNSHPVKASSAASE
GTPYFTSEATDRWIQLAALLDMAPVGVSKSQLSPSAPPSSRMPPPPPSSAAPLHPPPGGD
AEDDEGMKHLQQEAEKMVASLQDTSLEEECFTQALQQQQECRNTAAALPLSHEAAMKWFY
KDPQGEIQGPFTTVEMCEWFQAGYFTMTLLVKRGCDEGFQPLGDVIKMWGRVPFAPGPSP
PPLLVRQPPPTQRPQPTRGSAGTVSQSSANVEDGEGRMQRRGKLDRQVTGNLDQDRLKKQ
QELAAAAALYQQLQQQQLFQLINRCSEQGMMPSMNRSMSVPDTGSMWDMHTSASQPSGGE
ASLWDITMNPSTQGPTLEQLQKVASVLQQERRDAELRAKREEEEQRKRREEKRRLQEEQK
RREEEELFRRKQCRQQQELIMKLLQQTPQQQGPGAGSSGWSGAPSSGLSKAGKPPALALL
EMQQEAERLLKQQQQQQRAQQQRERLSGMSMGSSSMGGQWADGVGMWGGPGGMEGKSSSG
SSSGSMGMWDEAVKNQASLRGNSNNNMGLKNSRSSPSLSDQYMMRRKRTEDEDKLLKLLQ
GMKPQDGFTTWCEQMLHALNTSANNSSSSLDVSTIVAYLKEVESPYAVLEFIRSYLGDTV
EAKEFAKQFLERRAKQKANQQRQQQQLSKEVAGLNMNFPLQDSMRGMNPSTLQSMFQANH
MGKSGLYDNQGGKMKKKQPMMLHPDPSILGYSFHNASECLSLNEMEMVEDY
NT seq
3396 nt
NT seq
+upstream
nt +downstream
nt
atgactgctgagactcttaacttcggcccagaatggctccgtgcactgtccagtgggggg
agtgtgacgtccccccctccttcccccgccatgccaaagtacaagctggccgagtatcgc
tacggccgagaggagatgttagcactttatatcaaagacaacaaggtcccagaggacatg
caggataaggagtttgctgctattctgcaagatgagcccatgcagccactggcactggtg
cctctcactgaggaggagcagaggaacttctccatgtctgtgaacagtgtggcggtgcta
aggctcatgggaaaaggggtgggcgccaccgccccagctggagtggtccgaggacgaggg
gccccgcgaggtggtcgaggacgaggtcgcggtgaaggtggattttaccaaagaagtatt
gaagaaccggaggtgggttttggacgcggcgtccgagagattcatcgcagccagagctgg
gatgaccggggtgagcgtagatttgagaagccggtccggcgggaggtcgggcgtcccggc
tttgaagagcctgtagtgcctgtggttccaggacggaaggatttcacaagggctgacagc
gataactggcgcatcctccgggaggagcagcaggaggaggaggatgcggcggcgggggca
ggggctggtgctggggctggggtggtggtggtggagccgggaaccaactggagacttgca
ggagtccgcagggatgatgggggtcctcgctcagcaggctggcgggaacacaccggtccc
ggcgagggtcgtcgtcggaagtttgatttcgatttcagggacgccgatggccatggtggt
ggccgccggcgtgagggactggacgacggagacggcctgcctgagtggtgcacagacgag
gaagacggggagatgggcacgtttgactcctctggagctttcatggctttgaagaagggt
gacaaggacacaatcctggaggaggagtttgattttaaggggatagaggacgaggaagac
gaggagtgctacgctgacatcgagaggaacagtgctgaagaagacaaggagagtaaagaa
gctggctctgctgtaagggactgcgagacaaagccagcttcaccctcatcctctcctcca
gcactgcaacactgtacccccccctctgtggagcatcggcccagcaacgcaggcctgttg
gtggacaatcctcagctgaacaacagccaccctgtcaaagccagcagcgcggccagtgaa
ggtaccccctatttcacgtcagaagcaacagaccgatggattcagttagcagctctctta
gacatggctcctgtaggggtctctaagagccagctgagccccagcgcccccccttcgtca
cgtatgcctcctccacctccttcctctgctgctcctctccaccctccacctggaggggac
gcagaggacgatgagggcatgaagcacctgcagcaggaggcagagaagatggtggcgtca
ctgcaggacacttctctggaggaggagtgcttcacccaggctctgcagcagcaacaggag
tgcaggaacacagccgccgctctgccgctgtcacacgaggccgccatgaagtggttctac
aaggacccacagggagagatccagggtcccttcaccacggtggagatgtgcgagtggttc
caggccggctacttcaccatgaccctgctggtgaagcgtggctgcgacgagggcttccaa
cccctgggagatgtcatcaaaatgtggggccgcgtgcccttcgccccagggccctcccct
ccgcccctgctggtgagacagccaccaccgacgcagcgcccgcagcccacccgggggtcc
gccgggactgtgagtcagagctctgccaacgtagaagatggggaggggaggatgcagagg
agagggaagcttgatagacaggttacggggaacctggaccaggaccgcctgaaaaagcaa
caggagctggcggcagcagcagctctctatcagcagctccaacagcagcagctattccag
ctcattaataggtgcagtgagcagggtatgatgccttcgatgaacaggtcgatgtcagtg
ccagatacagggtccatgtgggacatgcatacctcagcttcacagccgtcaggcggtgaa
gccagtctttgggacataacaatgaatccttctactcagggtccaactctcgaacagctt
caaaaggtggcttcagttctccagcaggagaggagagacgctgaactcagggcgaagcgt
gaagaggaggagcagcgtaagaggagggaggagaagaggaggcttcaggaggagcagaag
aggagggaggaagaggagctcttcagacgcaagcagtgtcgtcagcagcaagagctgatc
atgaagttgctgcagcagactccccagcagcagggtcctggggcaggcagctcaggctgg
agcggggccccctcctcagggctctccaaggcaggaaagccccctgctctggctctgctg
gagatgcagcaggaggcagagaggctcctgaagcagcagcagcagcaacagagagcccag
cagcagagagagcgcctctctggcatgtcgatggggagctcctccatgggcgggcagtgg
gcggatggtgttggcatgtggggcgggcctggagggatggagggcaagagcagcagtgga
agctcttcaggcagcatgggcatgtgggacgaggctgtgaagaaccaagccagcctgcgt
ggcaacagcaacaacaacatgggcctgaagaacagccgcagcagcccctcactcagtgat
cagtacatgatgcgtaggaagcggactgaggacgaggacaagctgctgaagctgctgcag
ggcatgaagcctcaggacggcttcactacctggtgtgaacagatgctgcacgctctcaac
acctctgccaacaactcctcctcctcactggatgtttccacaattgtggcctacctgaag
gaggtggagtctccctatgcagtgctggagttcatccggtcctacctaggggacacagtg
gaagccaaagagttcgccaaacagttcctggagcgacgtgccaaacagaaagccaaccaa
cagagacagcagcagcagttatcaaaggaagtggctggattgaacatgaacttccctctg
caggactcaatgcgaggaatgaatccaagcaccctgcagtccatgtttcaagccaaccac
atgggcaagtctggtctctatgacaaccagggagggaagatgaagaagaaacagcccatg
atgctgcaccctgaccccagcatcttggggtattcattccacaacgcgagcgagtgtctg
agcctgaatgagatggagatggtggaggattactga
DBGET
integrated database retrieval system
