Trematomus bernacchii (emerald rockcod): 117487794
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Entry
117487794 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: collagen alpha-1(XXV) chain
KO
K24356
collagen type XXV alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117487794
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117487794
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
Motif
Other DBs
NCBI-GeneID:
117487794
NCBI-ProteinID:
XP_033992351
LinkDB
All DBs
Position
Unknown
AA seq
690 aa
AA seq
DB search
MEISEARGASKCVEKMEKEVAPQKRQHCRTTVVNIISSLCSVASIAFCIFLSINTADVKN
RVVDLESGNDEHTLIRAPGYSMDDFNSLIEQRVDDLLSQRTYEQFVKIRTARQASPECSC
PPGPPGKRGRRGRNGENGPPGTLGPKGEKGDQGDQGPRMVFPKINHGFLSADQQLIKRRL
IKGDQGQAGPPGPPGPPXPPGPRGPPGDTGKDGPRGVPGLAGDPGTPGEIGIIGPEGPPG
QKGFLGPAGNPGVGGLKGDVGIPGVDGVPGAKGEMGDRGEKGDLGEDGTKGDIGEKGDAG
SSAAGIKGEPGESGRGGTKGEPGLPGLPGLPGIKGEPGYLGPQGEPGLPGLPGTKGDRGD
HGPQGKGERGEIGLLGPKGSQGEGGTPGTKGSKGEYGDNGIVGSVGPKGPPGQKGDQGAT
EIVDYNGNIQEALQKITTITVTGPPGPPGPIGPEGGKGDRGMHGFPGLDGERGYKGSKGD
MGMPGASGDKGGTGLTGLPGVNGMRGDKGDAGLPGLQGSSIIGTPGPSGPHGPPGPMGPH
GFSGAKGESGLHGVKGIRGETGHKGDRGPLGLPGASGLDGKPGIRGQDGPVGPAGPAGPK
GDIGERGASGDPGPRGPYGLPGATGTPGLDGLQGLIGEKGDVGERGEKGEKGKKGKKGPK
GEKGEQGAPGLDAPCPLGPDGLPMPGCWQK
NT seq
2073 nt
NT seq
+upstream
nt +downstream
nt
atggagatctcggaggcaagaggagcatctaagtgcgtggaaaaaatggagaaagaagtg
gcgcctcagaagcgacaacactgccgcacaacagtggtgaacattatctcgtctttatgc
tcagtggcgtccatcgccttttgcattttcctgagcattaacacagctgacgtgaagaac
cgggttgtggatttggagagtgggaatgacgagcacaccttgatccgagccccgggctac
tccatggatgattttaattcattgattgagcaacgagtggatgatctgctctctcagcgc
acctatgaacaatttgtcaagatccggactgccagacaagcatctcctgaatgcagctgc
cctccaggacctccgggaaagcgaggaagaagaggccgcaacggagaaaatggacctcct
ggcactctaggtcccaagggtgaaaagggggatcaaggcgaccagggaccacggatggtc
ttccctaagatcaatcatggctttctttccgctgaccagcagctcataaagcggcgtctc
attaagggagatcaggggcaagctggaccaccggggcctccggggccaccgngtcctccg
gggccgagggggcctccaggggacacggggaaagacggacccagaggtgtacctggtcta
gcaggagatccagggacgcctggagaaataggaattatcggacctgaggggccaccaggg
cagaagggttttctcgggcctgctggaaatccaggtgttggtggactgaagggggatgtt
ggcatcccaggagtggacggagtccccggagctaagggtgaaatgggagatcgaggtgaa
aagggcgatttgggcgaagatggaacgaaaggtgatataggggagaagggagatgcaggc
tcctctgcagctggcatcaagggagaacctggagagtctggacgaggtggaacaaaggga
gagccaggacttccagggctgcctggactcccagggataaagggtgagcctggatacctc
gggccccagggagagccagggctcccaggactcccaggaactaagggtgatagaggcgac
cacgggccacaaggaaagggagaaagaggagaaattggactcttgggaccaaagggttcc
caaggagaggggggtacacctggtactaaagggtcaaagggggaatatggagataacgga
atcgtgggatctgttggcccgaagggcccccccgggcagaaaggagaccaaggagccaca
gaaatcgtcgactacaacggaaacattcaggaggctttacagaagattaccactattaca
gtaacgggtccacctggaccgcccgggcccatcggaccggaggggggcaaaggggatcgt
gggatgcatggcttccctggactcgatggagaaagaggctacaaaggctctaaaggagac
atggggatgcccggagcttcaggggacaaaggaggaactggtttaactggcctacctggt
gtgaacgggatgagaggagacaagggagacgcaggtctgcctggtcttcaaggttcttca
atcatcggcaccccagggccatcagggccccacggacccccgggacccatgggtccccat
ggtttctctggagcaaagggtgaatctggtttgcacggtgtgaagggtatccgaggagaa
acaggacacaaaggggaccgcgggccgctgggtctgcccggagcatccggcttggacggc
aagcccggaattaggggccaggacgggcctgtggggccagcggggccggcggggccaaag
ggcgacatcggtgagagaggagcgtcaggcgatccaggaccaaggggcccttacggactt
cctggagctactggaacaccaggcctggatgggttgcaaggcttaataggagagaaaggc
gacgttggggaaagaggagaaaagggggagaagggaaagaagggcaaaaaagggcctaag
ggcgagaaaggagaacagggggcccctggattagatgcaccctgcccattgggcccagat
ggattaccaatgcctggatgctggcagaagtga
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