Trematomus bernacchii (emerald rockcod): 117487845
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Entry
117487845 CDS
T09643
Symbol
dhx15
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117487845 (dhx15)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117487845 (dhx15)
03009 Ribosome biogenesis [BR:
tben03009
]
117487845 (dhx15)
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
117487845 (dhx15)
Spliceosome [BR:
tben03041
]
Complex A
U2 snRNP components
U2 related factors
117487845 (dhx15)
Complex B
117487845 (dhx15)
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
117487845 (dhx15)
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
90S particles
Helicases
117487845 (dhx15)
BRITE hierarchy
Motif
Pfam:
OB_NTP_bind
HA2_C
HA2_N
Helicase_C
DEAD
AAA_22
AAA_19
SRP54
nSTAND3
Flavi_DEAD
AAA_29
ABC_tran
Motif
Other DBs
NCBI-GeneID:
117487845
NCBI-ProteinID:
XP_033992457
EnsemblRapid:
ENSTBNG00005017836
LinkDB
All DBs
Position
Unknown
AA seq
748 aa
AA seq
DB search
MSRRQRVDLGDDYSPGKKRPSDRRDRDRERDDRPRDRDRDVKSSSMPRSVASSGSAGFSK
QPSLQQQTNPYTNLPHTPRYYEILKKRLQLPVWEYRERFTDILMQNQCFVLVGETGSGKT
TQIPQWCGDMVLAVEGPKRAVACTQPRRVAAMSVAQRVADEMDVMLGQEVGYAIRFEDCS
SAKTVLKYMTDGRLLREAMNDPLLERYGVIILDEAHERTLATDILMGVLKEVVRQRADLK
VIVMSATLDAGKFQVYFDNCPLLTIPGRTHPVEIFYTPEPERDYLEAAIRTVVQIHMCEV
DEGDLLLFLTGQEEIDEACKRIKREVDDLGPEVGDIKIIPLYSTLPPAQQQRIFEPPPPT
KPSGAIGRKVVVSTNIAETSLTIDGVVFVIDPGFAKQKVYNPRIRVESLLVTAISKASAQ
QRAGRAGRTCPGKCFRLYTEKAYKTEMQDNTYPEILRSNLGSVVLQLKKLGIDDLVHFDF
MDPPAPETLMRALELLNYLAALNDDGDLTELGSMMAEFPLDPQLAKMVIASCEYNCSNEI
LSITAMLSVPQCFVRPTEARKMADESKMRFAHIDGDHMTLLNVYHAFKQNSDSNQWCYEN
FVNYRSLMSADNVRQQLARIMDRFSLPRRSTEFTHRDYYTNIRRALITGFFMQVAHLERT
GHYLTVKDNQVVQLHPSTVLDHKPEWVLYNEFVLTSKNYIRTCTDVKPEWLVKIAPQYYE
MSNFPQCEAKRQLERLIAKVSSKEYTQY
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtccagacgacagcgtgtagatttgggtgatgattattctccgggtaaaaagagaccc
tcggataggcgtgaccgcgacagagagcgcgatgatcggcccagggatcgggacagagac
gtgaagtcctccagcatgccccgcagcgtggcttcgtctggcagtgcgggcttctctaaa
cagccctccctccagcagcagaccaacccctacaccaacctgccccacacgcctcgctac
tacgagatcctgaagaagcgcctgcagctgcctgtgtgggagtacagagagcgcttcacc
gacatcctcatgcagaaccagtgctttgtgctggtcggggagacaggatctgggaaaacc
acacagatccctcagtggtgtggggacatggtgctggcagtggagggtccgaagagagcg
gtggcctgcacccagcctcgcagggtcgccgccatgagcgtcgcccagagggtcgccgat
gagatggatgtgatgctgggccaagaggtgggctacgccatccggtttgaggactgcagc
tctgccaagacggtgctcaagtacatgacagatggaaggctgctgcgggaggccatgaac
gatcctctgctcgagcgctacggtgtcatcatcctggatgaggctcacgagcgcacgtta
gccacagatatcctcatgggggtcctcaaggaggtcgtccgccagagggctgacctcaag
gtcatcgtcatgagtgccacgctcgacgccggaaagttccaggtgtactttgacaactgt
ccactgctgaccatccccgggcgcacccaccccgtggagatcttctacacccccgaaccg
gagcgggactacctggaggcggccatccgaaccgtggtccagatccacatgtgcgaggtg
gacgaaggcgacctgctgctcttcctcaccggacaagaggaaattgacgaagcctgcaag
cggatcaagagggaggtggacgacctggggcctgaagtcggggacatcaagatcatcccg
ctgtactccaccctgcccccggcgcagcagcagaggatctttgagccacccccacccacc
aaaccaagcggtgccatcggaaggaaggtcgtggtgtccacaaacatcgccgagacgtcc
ctgaccatcgacggcgtggtgtttgtaattgatcctggatttgccaagcaaaaggtatat
aacccccgtatcagagtggagtcccttttggtgacagccatcagtaaggcgtcggcccag
cagagggcgggccgtgccggacgtacatgcccaggaaagtgtttccgcctttacacagag
aaagcttacaagacagaaatgcaggacaacacgtatccagagatcctgaggtctaacctg
ggctctgtggtgctgcagctgaagaaactggggatcgacgacctggtgcactttgacttc
atggaccctccagctccagagaccctgatgcgtgccctggagctgctgaactatctggcg
gcgctgaatgacgacggtgacctgacagagctgggctccatgatggccgagttccccctg
gacccccagctggccaagatggtgatcgccagctgtgaatacaactgctccaacgagatc
ctctccatcaccgccatgttgtcagtcccacagtgcttcgtccgacccacggaggctaga
aagatggccgacgagtccaagatgcgcttcgcccacatcgacggagaccacatgacgctg
ctcaacgtgtaccacgccttcaaacagaacagcgactccaaccagtggtgctacgagaac
ttcgtgaactaccgctcgctgatgtcggcggacaacgtgcggcagcagctggcgcggatc
atggaccgcttcagcctgccgcggcgcagcaccgagttcacccacagagactactacacc
aacatccgccgcgcactcatcaccggcttcttcatgcaggtggctcacctggagcgcacc
ggacactacctgacggtgaaggacaaccaggtggtgcagctgcacccgtccaccgtgctg
gaccacaagccggagtgggtgctctacaacgagttcgtgctcacctccaagaactacatc
cgcacgtgcaccgacgtcaaaccagagtggctggtgaaaatcgccccgcagtactatgag
atgagtaacttcccccagtgtgaagctaagagacagttggagcgtctcattgccaaagtc
tcatccaaggagtacactcagtactga
DBGET
integrated database retrieval system
