Trematomus bernacchii (emerald rockcod): 117487904
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Entry
117487904 CDS
T09643
Name
(RefSeq) phospholipid-transporting ATPase ABCA1-like
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben02010
ABC transporters
tben04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
117487904
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
117487904
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
tben02000
]
117487904
Transporters [BR:
tben02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
117487904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_15
AAA_23
Motif
Other DBs
NCBI-GeneID:
117487904
NCBI-ProteinID:
XP_033992557
LinkDB
All DBs
Position
Unknown
AA seq
2244 aa
AA seq
DB search
MGLLTQFTLLLWKNFTLRKRQKVRLVVEVIWPLFLFFILVGVRSTNKPVFKGQCHYPNKA
MPSAGVLPWLQGMMCNINNPCLNSPTPGETPGQVNNFNNSIVAGMLVELQTLVVNRSILS
KALLLADDLEQWDSVLSQTNAAKARPVILKSLLRDNETFSAHLEEDLSVPPSVVQSLLNA
QIKLNPMMSTPRPGDLQSVLCEGTDLDEYIQFSTASEKETFQNVSCFLDPQQLLNAQRVL
LTNLDGRKVFSEVPAALDLNAADTASLLGKTTRDALPVFEEVARLQSSMIFQAASALDFR
ADMMGSINMLLCGKQPDVNMSRSSPPLTDSKEPVSIAAGNSSDAFCQTLVETLEETPGLR
FIWSTFRPLLQGKVLYTPDTPAAHLLVKEANSTFNALAQLRELAESWEEVGPRLYNFLQN
SSQVNTLRALLGNPVFAAVLDQRLNSTGWTSKQLTNFLYNGPPEDRPPGMPPNDWRNVYN
ATTDILKLLSNFLGCLDLNKFEAVPTESRLLSRAQELLENETYWAALVFENLQPNASLPP
PYVKYKIRMDIDETEGTTEIKERSWSPGARDNPLNDLRYIWGGFSYLQDMMDHGIIRAHT
HSTQPLGVFAQQMPYPCYVDDVFIQSIGGILPMFLVLAFMYTVCMTIKGLVLEKELRLKE
VLRAVGIQNGALWAATFCENMVLLMVPCALISIMVKYGKVLQYSDPSVIFVFLLVFCLAT
VTQCFFISVFFSKANLAAACGGLIYFVLYLPHVLCYAWRDVMGFEVKVAVSLLSCVAFGY
GCENFAKYEEQGIGIQWSNILQSPEEGESYTFIVSIIMMLFDATFYWLLTWYIENVFPGQ
YGIPKPWYFPVTASYWCGTASAHEDNEDMFYKCMHVLFACVSAEYLEKAPSDMKAGVSIR
NLVKIYKTGKKLAVDGLSMDFYEDQITSFLGHNGAGKTTTMSILTGLFPPTSGTALINGY
DILSDMDSIRKYLGMCPQHNVLFNELTVEEHIYFYARLKGLSRQEVQTEMEQMIEDVGLL
HKRKDLAKNLSGGMQRKLSVAIAFVGGSKIVILDEPTAGVDPYARRGIWDLLLKYKQGRT
IILSTHHMDEADILGDRIAIISNGKMRCCGSSLFLKKCFGSGYYLTLVREGSVKMAAQRN
GIIQSQVKDVPTEKDFTSRSSSPDDGIGSQTWANSDPSDVSDVGQIVRRYVPGAVFLESI
GQEITFVLPYAGARDGTFALLFSELDRASAELGLTSYGISDTTLEEIFLKVAEETGVDSE
TTKELLERDCRRNSFKRSSISSASAKRELKEQFTSKVEDLQRSASLSGRGSSVIVGGQLI
RRQFLALFIKRFHHARRSRKGLIAQVVLPAAFVCLSLIFSLIMPPFTEYPSLELQPWMYG
LPQTTFYSNDGPGNAEVSKVVETLVNNPGFGTRCMTGDPIPKLPCSSAGSDWFTPPVDPS
ITDIFLQGNWSMANPSPSCQCSTPKRTIMLPDCSPGAGGLPPPQRIQNTTDTLLDLTGRN
MTDFLVKTFENSGKARLGGLSVGGVNSQVRMSEAAIEASFRDLRELITPYQDNVTDQILQ
NAEVLLKKLGTRDNVKVWFYNQAWHGMASFLSVANNAILRGNLPAGTDPRSYGISVSNHP
LNLTKAQLSYVAMATASTDVVVSICVIFAMSFIPASFILFLIQERVNKAKHLQFVSGVNP
AVYWLANFAWDMCNYIVPCLIVIVIFLGFQQKAYVSPANLPALILLLIMYGWSITPMMYP
ASFIFSVPSTAYVVLTCINLFIGINGSIATFVMELFDDDNVSRINDIVKQVLLIFPHFCL
GRGLIDMAKNQAMATLFSNFGEDRFQDPLSWDMVGKNLCAMSIQGAVMFTVTILIQYKFF
CKPRLVSGKSLSGEEKEDVDVARERERVHGGGAQNDLLRICDLTKVYSRRSTPAVDRLCV
GVPAAECFGLLGINGAGKTTTFKMLTGDIPVSGGEAFLNGYSIRTEMRDVHQNLGYCPQF
DAIDELLTGREHLEFYARLRGVPEKEVAKVAEWGVQKLGLVKYSNKSAGTYSGGNKRKLS
TAIALIGCPPVVFLDEPTTGMDPKARRFLWDCILSVIKEGRSVILTSHSMEECEALCTRM
AIMVNGAFKCLGSIQHLKSRFGDGYTVTVRVGGSPPALKPVEDFVQHGFPGSVLKEKHHN
TLLYQLPYTEGALAHIFSQFTCHQLRLQVEDYSVSQTTLDQVFVNFARHQHVEDDARTFD
NAVDTSDELPLQAVKTQEEHLKQV
NT seq
6735 nt
NT seq
+upstream
nt +downstream
nt
atgggtctcctgacgcagttcactctgctgctgtggaagaacttcactctgcggaagaga
caaaaggtgcgtctggtggtggaagtgatctggcctcttttcctcttcttcatcctggtt
ggggtgcgctccaccaacaagcctgtgtttaaaggacaatgtcactacccaaacaaagcc
atgccctcggccggcgtgctgccctggctgcaggggatgatgtgcaacatcaacaacccc
tgtctgaactcccccaccccgggggagacaccgggacaagtcaacaacttcaacaactcc
atagttgctgggatgttagtggagctgcagacgctggtggtgaacagatctattctcagc
aaggctctgctgctggcagacgacctggagcagtgggactccgtcctgtcccagaccaac
gctgccaaggctcggccagtgatcctgaagagtcttctcagagacaatgaaaccttctcc
gctcatctggaagaggacttgtcggtgcctccatcagtcgtccaaagcctcctgaacgct
cagattaaactcaacccaatgatgagcaccccgcggcccggcgacctgcagagcgtcctg
tgtgaggggacagatctagacgagtacatccagtttagcaccgcgtcagagaaggagact
ttccaaaatgtcagctgcttcctcgatcctcagcagctgctcaacgctcagagagttctg
ctgacaaacctggacgggaggaaagttttctcagaggtgcctgcagctctggatctgaat
gcagcagacaccgcctccctgttggggaaaaccactcgagatgcattaccagtgtttgag
gaggtggctaggctgcagagctccatgatcttccaggctgccagtgcattggatttccga
gcagacatgatgggcagcatcaatatgctcctgtgtggaaagcagcctgacgtcaatatg
agccgcagctcacctccactgacggacagcaaggagccagtctccattgctgcgggaaac
agctctgacgctttctgtcagacgctggtcgagaccctggaagaaacacctggcctgcgc
ttcatctggagcaccttcagaccgctgctgcaggggaaggtcctctacacccccgacacc
cccgctgcacacctcctggtgaaagaggcaaacagcacattcaacgccttggcccagctg
agagagctcgctgagtcctgggaggaagtcgggccccggctctacaacttcctgcagaac
agctctcaagtcaacacactacgggcgttgctggggaatccggtgtttgccgctgtgttg
gatcagcgcctcaacagcacggggtggacgtccaagcagctcaccaacttcctgtacaac
gggcccccggaggaccgcccccccggcatgccccccaacgactggagaaacgtttacaac
gccaccaccgacatcctgaagctgctctccaacttcctgggctgtttggacctcaataag
tttgaggcggtccccactgagagccgtctgttgagcagagcgcaggagctcctggagaac
gagacgtactgggccgcgttggtgtttgagaacctgcagcccaacgccagcctccccccg
ccctacgtcaagtacaaaatccgtatggacatcgacgagaccgagggcaccaccgaaata
aaggaaaggtcatggtctccgggtgcccgggacaacccccttaacgacctgcgctacatc
tggggaggcttctcctacctgcaggacatgatggaccacggcatcatccgggcgcacacc
cacagcacgcagccgcttggggtgttcgcgcagcagatgccctacccgtgctacgtggat
gacgtcttcatccagagcatcggaggcatccttcccatgttcctagtgctggccttcatg
tacaccgtgtgcatgaccatcaaaggccttgtgctggagaaggagctccgcctgaaggag
gtgctgcgcgccgtgggcattcagaacggcgccctgtgggccgccacgttctgcgagaac
atggttctgctcatggtgccatgtgctctcataagcatcatggtgaagtacggtaaggtt
ctgcagtatagcgacccctcggtgatcttcgtcttcctgctggtgttctgcctggccacc
gtcacgcagtgcttcttcatcagcgtcttcttctccaaggctaacctcgcggcggcgtgc
ggcggcctcatctacttcgtcctctacctgccgcacgtcctctgctacgcctggagggac
gtcatgggcttcgaggtcaaggtggcggtgagtctgctgtcctgcgtggcgttcgggtac
ggctgcgagaactttgcgaagtacgaggagcaaggcatcgggatccagtggtccaacatc
ctccagagcccggaggagggcgagagctacaccttcatcgtctccatcatcatgatgctg
tttgacgccaccttttactggctgctcacctggtacatcgagaacgtcttcccaggtcag
tatgggatcccgaagccgtggtacttccccgtcaccgcgtcgtactggtgtgggaccgcc
tctgcacatgaagataatgaagacatgttttataagtgtatgcatgttttgtttgcttgt
gtgtctgcagagtatctggagaaagcaccgtccgatatgaaagcaggcgtctcaatccgt
aacctggttaaaatctacaagacggggaagaagctggcggtggacggcctcagcatggac
ttctacgaggatcagatcacgtctttcctcggacacaacggagccgggaaaaccaccacc
atgtccatcctgaccggcctgttccctcctacatcgggaacagctctgatcaacggatac
gacatcctgtctgacatggactccatcaggaagtatctgggaatgtgcccgcagcacaac
gtcttgttcaatgagctgacagtggaggagcatatctacttctacgcccgtctgaaggga
ctcagccgccaggaggtgcagacggagatggagcagatgattgaggatgttggtttactg
cacaagaggaaggatctggctaagaacctgtcaggcgggatgcagaggaagctgtctgtt
gctatagcgtttgtcggcggctcaaaaatcgtcatcctggatgaacccacagcgggtgtg
gacccctacgcccgcagggggatctgggacctgctgctcaaatacaaacaaggccgcacc
atcatcctgtccacacaccacatggacgaggcggacatcttgggggatcgcatcgccatc
atctccaacgggaagatgcgctgctgcggctcctcgctcttcctgaagaagtgcttcggc
agcggctactacctgacgctggtgcgagaggggagcgtcaagatggcggcacagagaaac
gggatcattcagagtcaggtcaaggatgtaccgacagagaaagacttcacctctcgcagc
agcagtccagatgacggcatcggcagtcagacctgggccaactcggacccctcagacgtg
tcagatgttggtcagattgtgcggcgctacgtccccggggccgtcttcctggagagcatc
ggccaggagatcaccttcgtgctgccgtacgccggagccagagacgggaccttcgctctg
ctgttctcagaactggaccgggcctccgctgagctcggactcaccagctacggcatctcc
gacaccacactggaggagatatttctcaaagtggcagaagaaaccggagtggattcagaa
acaacaaaggagctgctggagcgagactgcaggagaaactcattcaagaggagtagcatc
tccagcgcctctgcaaagagagagttaaaggagcagttcacaagtaaagtggaagacctc
cagaggagcgccagcctcagtgggcgggggtcctcggtcattgtcggggggcagctgatt
agaagacagttcctggcgctcttcatcaaacgcttccaccacgcccgccgcagccgcaag
ggcctcatcgcacaggtggtgttacctgcagcctttgtgtgtctgtctctgatcttctcg
ctcatcatgccccccttcacggagtaccccagtctggagctgcagccctggatgtacggg
ctgcctcaaaccactttttacagcaatgatggtccgggtaatgcagaggtgtctaaggtg
gtggagacgctggtgaacaatcctggctttggcactcgctgcatgactggagacccaata
ccgaagctcccgtgttcctcggctggctctgattggttcactcccccggtggatccgtcc
atcaccgacatcttcctgcaggggaactggagcatggccaacccctccccctcctgccag
tgcagcacacctaaacgcaccatcatgttacctgactgctcccccggagcaggaggactg
cccccccctcagaggatacagaacactacagacaccttgctggatttaaccggacgcaac
atgacagacttcctggtgaagacgtttgaaaactcggggaaggcgaggttgggaggcctt
tcagtcggaggagtaaactctcaggtccgtatgagcgaggcggcgatcgaagcgtcattt
agagatctccgggagctcatcactccttaccaggataatgtgacggatcagatcctgcag
aatgccgaggtgctgctgaagaagctgggaaccagggacaatgtgaaggtgtggttctac
aaccaggcctggcacggcatggcgtccttcctcagcgtggccaacaacgccatcctgagg
ggcaacctgcctgcaggaacggacccccgcagctacggcatctccgtgtccaaccacccc
ctcaacctcaccaaggcgcagctgtcctacgtggccatggccacggcttccaccgacgtg
gtggtgtccatctgcgttatcttcgccatgtccttcatcccggccagcttcatcctcttc
ctcatccaggagagggtgaacaaagccaaacatctgcagtttgtcagcggagtcaacccc
gccgtgtactggctggccaacttcgcctgggacatgtgtaactacatcgtcccgtgcttg
atcgtgatcgtgatcttcctcggcttccaacaaaaagcctacgtttcccccgccaacctt
cctgctctgattctgctgctcataatgtatgggtggtccatcacccccatgatgtacccc
gcctccttcatcttcagcgtgcccagcacagcgtacgtggtgctgacctgcatcaacctc
tttatcgggatcaacggcagcatcgccaccttcgtcatggagctctttgatgacgataat
gtgtcccgcatcaacgacatcgtgaagcaggtgctgctcatcttccctcacttctgtctg
gggagggggctcatcgacatggccaagaaccaggccatggccacgctcttcagcaacttc
ggggaggaccgtttccaggacccgctcagttgggacatggtggggaagaatctgtgcgcc
atgtccatccagggagccgtcatgttcaccgtcaccatcctcatccagtacaagttcttc
tgcaagccccggctggtttcagggaagtctttatcaggggaggagaaggaggacgtcgac
gtggcgcgggaacgagagcgtgtgcacggcggcggagcgcagaacgacctgctgaggatc
tgtgacctcaccaaggtgtattctcggaggagcacccccgctgtggatcggctctgtgtg
ggtgtacctgctgcagagtgtttcggcttgctgggaatcaacggggccgggaagaccacc
accttcaagatgctgacaggagacatccccgtctccggaggggaggctttcctaaacggg
tacagcatccggacggagatgagggacgtgcatcagaacctgggatactgtcctcagttt
gacgccatcgacgagctgctgacggggcgcgagcacctggagttttacgcccggttacga
ggagtcccagagaaagaggtcgcaaaggtggcagagtggggggtgcagaagctggggctg
gtgaaatactccaacaagtctgcagggacgtacagcggcgggaacaaacgcaaactgtcc
accgccatcgcgctcatcggctgccctcctgtcgtcttcctggacgagcccaccacaggc
atggaccctaaggcccggcgcttcctgtgggactgcatcctgagcgtcatcaaggaggga
cgctccgtcatcctgacctctcacagcatggaggagtgtgaagctctctgcacccgcatg
gccatcatggtcaacggtgccttcaagtgcctcgggagcatccagcatctgaagagcaga
ttcggtgatggctacacggtgacggtgcgtgtgggcggctccccccccgctctgaagccg
gtggaggactttgtgcagcatgggttcccaggcagcgtgctgaaggagaagcatcacaac
acgctgctgtaccagctgccctacacagagggggcgctggcacacatcttcagccagttc
acctgccaccagctgcgcctgcaggttgaggactactccgtctcccagacaacactggac
caggtgtttgtgaactttgcgaggcaccagcatgtggaggacgacgctcggaccttcgac
aacgccgtggacacttcagacgagctgccgctgcaggctgtgaaaactcaagaggaacac
ctgaaacaagtctga
DBGET
integrated database retrieval system
