Trematomus bernacchii (emerald rockcod): 117488092
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Entry
117488092 CDS
T09643
Symbol
acin1b
Name
(RefSeq) LOW QUALITY PROTEIN: apoptotic chromatin condensation inducer 1b
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117488092 (acin1b)
09122 Translation
03013 Nucleocytoplasmic transport
117488092 (acin1b)
03015 mRNA surveillance pathway
117488092 (acin1b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117488092 (acin1b)
03041 Spliceosome [BR:
tben03041
]
117488092 (acin1b)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117488092 (acin1b)
Spliceosome [BR:
tben03041
]
Complex C
Other components
EJC/TREX
117488092 (acin1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
117488092
NCBI-ProteinID:
XP_033992731
LinkDB
All DBs
Position
Unknown
AA seq
1336 aa
AA seq
DB search
MADEDITLDGKPLQSLRVADLKAALEQRNLPKSGQKNALIKRLKGALMLENLQKSSSSHS
GLQPNSQIGEEMSQNSFIKQYLAKQQELLHERLEREAQQDEAVDESSAVQEEDEDHSEDN
DSSSYVSDKKNRSIPPKPLLPRAEERGGGDAGMVHGMMACVPDMGPGPTLPPQEFLEAPG
ARMQRATFHQGHKEPPAPSPPRAVASLSVRVLGQPDRQGLPPAVPRAQEKEGTAPSEPGS
AHPVLHLSRSAGVSGGSQAREDSDDDDSDDESEDDEDWGPGPGGARRGNRAPPQPQQMPP
SFPSTVARSKRKLQPPQHIPPPQVHHTPMQLRHPTPPPSPPPDLFPLPDTPKQSPPDTED
QEGDRPEASRGPRGPSFPPSTMQRQDSDSSSRSSSPEPSMKRRPGPLSLLAHRMDSEGAF
RAAEATSAVDLSGEAAAHSTAGFASFGDSPLKRLERKRLQENRDVEEERRLKEEKEREQQ
QKQERERMKIQEQEIERERLEEERKRLEEEKKRLEEEEKQREKERKRQEEEKERKRQEEE
KIREEKLQKEKERKHQEEEKIREEKLQKEKERKHQEEEKIREEKLQKEKERKHQEEKIRE
EKLQKEKERKHQEEEKIREEKLQKEKERKRQEEEKIREEKLQKEKERKHQEEEKIREEKL
QKEKEKKQETVYKGRVAVTEAQDSGSSSDSESSSHSSQSSSSSSGVKTGPARQLKKPNQG
HKAEEEKKTNLSKGAEKQHVSTREVSEPSAAAVTEVLPDPESSMAQQPPSGAEAESSEGR
LEEGTNQKAFPARKISLTSSKTSPPATDGGAGDCESGTAAGRKRRWGSSSAVTTKKPSIS
ITTDSLKSLIPDIRVKEEAVVELHPEELQMSGDEESPDPSTGDQDKGLKIRRTVTQVVPG
DAQENGQTNEEEEEEEEVEKTEKEKQRRTSRDKRNNSVSEEAMETQISVKIEGDEKKVTP
SDSLVRRSISQQKSGVSVTIDDPVRTTRQPSPPQGKVSKIIHVTNLVRPFTLGQLKELLN
RTGSVLEDGFWIDKIKSHCFVTYGTTEEAVATRAALHGVKWPSSNPKVLNVDFCEQDEMD
IHKGILKPEREKPHAVAPQSAPPSRLPPLMPERDHEREQNPEWDRGMGGVRELWVERQRE
MERRERARGEREWDRDKVREFARPGEDRPRSRSRERRRRERAKSKERKTEKKGDEPPAKL
LDDLFLKTKAAPCIYWLPLSEEQAAHRIQERTERQKEREQRRKERQEELEKKAEEERERL
KERLKAREKDGGAAAVAVVASVGAAGRGAERERERGRDREPDRKRDGSNRPPPRPSVGAG
AGRRSRSRSNPRDRRR
NT seq
4011 nt
NT seq
+upstream
nt +downstream
nt
atggcggacgaagatattacgctggatggaaaacctctacaatcgctccgggttgcggat
ttaaaagctgctttggagcaaagaaacctgcccaagagcggacagaaaaatgcgctcatt
aagcgactgaaaggggctctgatgcttgaaaatcttcagaagtcgtcctcctctcacagt
gggctgcagcccaactcgcagattggtgaggagatgagccagaatagcttcataaaacag
tacctggctaaacagcaggagctccttcacgagaggctggagagagaggcccagcaggac
gaagcagtagacgaaagctcagccgtgcaggaggaggatgaagaccattcggaggacaat
gacagctcctcctatgtcagtgacaagaagaatcgctccataccccccaagcccttattg
ccccgggcagaggagagaggaggaggagatgcagggatggttcacgggatgatggcgtgc
gtccccgacatgggcccgggtcctaccctccccccccaggagttcctcgaggctccaggt
gctaggatgcagcgagccacctttcaccagggacacaaggagcccccggccccgtctccc
ccccgcgccgtagcctccctgtcggtgcgcgtcctgggccagcccgaccgccaggggctg
ccccccgccgtgccgcgagcccaggagaaggagggcaccgcaccgagcgaaccgggatcc
gcgcaccccgtcctccacctcagccgatcagctggagtctcaggggggagtcaggctcgc
gaggacagcgatgatgacgacagtgatgacgagagcgaggatgatgaggattgggggccc
ggtcccggcggggcgcggaggggaaacagagcgccgccccagccgcagcagatgcctccc
agcttcccgtcaacagttgccagatccaaacgcaagctccagcctccccagcacatccca
ccaccacaggtacaccacacaccaatgcaactgcgccaccccacccctcctccctctccc
ccccctgacctgtttcccctacctgacactcccaaacagagcccaccagacacagaggac
caggaaggagataggcccgaggcttcacgtggtcccagggggccgtctttcccaccttcc
accatgcagaggcaagactctgactcgagctctcgttccagcagtccggagccttctatg
aagcgaaggcccgggcccctctctctgctcgcacacaggatggactctgagggggctttc
cgtgcagcagaggccacctccgctgtggatctgtcaggagaggcggcggcacactccact
gccgggtttgccagttttggtgattctccgctgaaaagattggagagaaagaggctccaa
gagaacagagacgtggaggaagaaaggcgcctgaaggaggagaaagagagagaacaacag
cagaagcaggagagagaaagaatgaagatacaagagcaggagatagagagggaacgcctg
gaagaagagaggaaacgcctggaagaggagaagaagcgcctggaagaggaggagaagcag
cgtgaaaaagagcgaaagcgccaggaagaggagaaggagaggaaacgccaggaagaggag
aagataagagaggagaaactgcagaaggagaaggagaggaaacaccaggaggaggagaag
ataagagaggagaaactgcagaaggagaaggagaggaaacaccaggaagaggagaagata
agagaggagaaactgcaaaaggagaaggagaggaaacaccaggaggagaagataagagag
gagaaactgcaaaaggagaaggagaggaaacaccaggaggaggagaagataagagaggag
aaactgcaaaaggagaaggagagaaaacgccaggaggaggagaagataagagaggagaaa
ctgcaaaaggagaaggagaggaaacaccaggaagaggagaagataagagaggagaaactg
caaaaggagaaggagaagaaacaggagacagtctacaaaggcagggtggctgtgactgag
gcccaagactcaggttcctcatcagactccgaatcctcttcacactcgtcacaatcctcc
tcctcctcctccggggtcaaaaccggccctgccagacagctgaagaagccaaaccaagga
cataaagcagaggaggagaagaagactaaccttagtaaaggggcagagaaacaacacgtt
tcaacaagggaggtgtcggagcccagcgcggccgccgtgacggaggtgctgccggacccc
gagagctccatggcccagcagccgccctccggggccgaggcggagagcagcgagggtcgc
ctggaggagggcaccaatcagaaggctttccctgcccgtaagatatccctgaccagcagc
aagacgtctccacccgccacagatggaggagcaggcgactgtgagtcggggacggcagcg
gggaggaagaggcgatggggctccagctcggccgtcaccaccaagaaaccatccatcagc
atcaccaccgactctctgaagtcgttgatccctgacatcagagtgaaggaggaggcggtg
gtggagctgcacccagaggagctgcagatgtccggggacgaggagagcccggaccccagc
acgggggaccaggacaagggcctcaagatcagacgcaccgtcacacaggttgtcccagga
gacgctcaggaaaacggacagacaaacgaggaggaggaggaggaggaggaggtggagaaa
acggagaaagagaaacagcgcaggacttccagagacaaaaggaataacagcgtttcggag
gaagccatggaaacccagatatctgtcaagattgaaggagacgaaaagaaagtgacccct
agcgacagcctggtgcgtcgctccatcagtcaacagaagtcaggcgtttccgtcaccatt
gacgaccccgtccgcacgaccaggcaaccctcaccgcctcagggcaaagtctcaaaaatc
atccatgtgaccaacctggtgcgacccttcaccctgggccaactcaaagagctgctgaac
aggaccggcagcgtgctggaagacggcttctggatcgacaagatcaagtctcactgcttc
gtcacatacggtaccacagaggaggcggtcgccaccagagccgccctccacggggtcaaa
tggccttccagcaatcccaaggtcctcaacgtcgacttctgtgagcaggatgagatggac
attcacaaaggcatcctgaagccagagagggagaagccccacgctgtcgccccccaaagt
gctcctccgagccggctgccccccctgatgcctgagcgagaccatgagcgggaacagaac
ccagagtgggaccgtggcatggggggagtgcgggagctgtgggtggagcggcagagagag
atggagcgccgggaacgagcccgtggcgagcgggaatgggaccgggataaggtccgggag
ttcgcccggccgggagaggacagaccccgctctcgatccagagagaggaggaggagggag
agggccaagagcaaggagaggaagacggagaagaagggagacgagcctcctgcaaagctg
ctggacgacttgttcctgaagaccaaagcagcgccgtgtatctactggcttcccctctct
gaggagcaggcggcacataggattcaggagcgcaccgagcggcaaaaggagcgcgaacaa
cggcgcaaggagcggcaggaggagctggagaagaaggcggaggaggagagggagcggctg
aaggagcggctgaaggctcgggagaaagatggcggcgcggctgcggtggcggtggtggcg
agcgtcggagcggccgggcgaggagcagagagagagagggagcgcggccgagacagggag
cccgacaggaagcgggacggcagcaaccgaccccccccacgaccctctgtaggcgccggg
gcaggacgccgctcccgtagccgtagcaaccccagggatagacgccgctga
DBGET
integrated database retrieval system
