Trematomus bernacchii (emerald rockcod): 117488144
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Entry
117488144 CDS
T09643
Symbol
pcdh7b
Name
(RefSeq) protocadherin-7b isoform X1
KO
K16498
protocadherin delta 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
117488144 (pcdh7b)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117488144 (pcdh7b)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
tben04515
]
117488144 (pcdh7b)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117488144 (pcdh7b)
Cell adhesion molecules [BR:
tben04515
]
Cadherins
Protocadherins
117488144 (pcdh7b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
Mid2
TMEM154
Adeno_E3_CR2
DUF1180
Motif
Other DBs
NCBI-GeneID:
117488144
NCBI-ProteinID:
XP_033992820
LinkDB
All DBs
Position
Unknown
AA seq
1257 aa
AA seq
DB search
MRTTGAVDYVYYCMLILQFVHQPAAKQVLRYRLAEEGPADVRVGNVAGDLGIVAGSGEVT
FTLESGSDFFKIDNITGELTTNERRIDRDKLQQCQMIFDENECFIDFEVSVIGPAQSWVD
LFEGKVIILDINDNTPSFPSPVLTLSVEENRPIGTLYLLPTATDRDFGRNGIERYELIQD
NGENSRRLGSSGDSFNGKRRFEEAASRSSVFELQVADTSDGEKQPQLIIKGALDREQRDS
YELTLRVRDGGDPPRSSQAILRVMITDVNDNSPRFEKSVYEADLPENSSPGAPILQLKAA
DADVGVNGQIEYVFGAATESVRRLLRLDESTGWLSVLHRIDREEVSQLRFTVMARDRGQP
PKMDKATVVLNIKDENDNVPAIEIRKIGRIFLKDGIANVAEDVVVDTPIALVQVSDRDQG
ENGIVTCTVVGDVPFQLKPASEMEGDQNKKKYFLHTSATLDYEATQEYNVVIVAVDSGSP
SLASNNSVIVKVGDTNDNPPIFSQNVVEVSFLENNAPGERVTTVKAIDADSGKNAEIAYS
LDSSVNGIFSIDADSGDIRVNTILDREQTERYEFKVIAKDKGINTLQGSATVVVLVADKN
DNEPKFMQDVFTFYVKENLEPNSPVGMVTVIDADKGQNAEMRLFIEEEEENFSIENDTGT
IFSTLSFDREQKTTYTFRVKAVDGGDPPRSATATVSLSIMDENDNAPTVTFPLNSSYTLL
PPSSNIRTVVRTVIATDTDTAVNADLSYSIIGGNPFRLFEIDGGTGVISLVGKLEQKHYG
LHRLVVQVNDKGQPSQSTTTLVHVFVNETLSNSTVVEAQVARSLSTSLNTNIAGDPNYDL
SKQRLSIVIGVVSGIMTVILIILVVVMARYCRPKNKNGYEAGKKDHEDFFTPQQHDKAKK
PKKDKKKLKSKQPLYSSIVTVEASKPNGQRYDGVNEKLSDSPGMGRYRSVNGGPGSPDLA
RHYKSSSPLPTVQLHPQSPTAGKKHQAVQDLPPANTFVGTGDNISLGSDHCSEYSSQTIN
KYNKQPFRRVTFSVVSQPQDPHQQGSLQSCYDSGLDESETPSSKSSSGPRLGALPLPEDS
YERTTPDGSVGEAEHLENDSRPLPDVAMTGKCTRECDEYGHSDSCWMPVRTSPERRPSKS
TTTPQQPKLSTFMSGNGSSSSSSSSEQPDSQETLAMAAMANGDPTAAHMMGDRNRNLLNK
KMASSSSSYEAFGSPSYSSPENGEEVLRHPTEEIPLAPTGEYKPTSCGTLTRREVYL
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atgaggactactggtgcagtggactatgtgtactattgcatgctcatcctgcagtttgtg
catcagccggctgccaagcaagtgctccggtaccgtttggctgaggagggacctgccgat
gtcagagtagggaacgtggcaggcgacctgggcattgttgccgggtccggtgaggtgaca
tttacgctagaatcaggctccgattttttcaaaatagacaacattacaggtgagctcacc
accaacgagaggcgcatagaccgtgacaaattacagcagtgccaaatgatatttgacgaa
aatgagtgttttatagacttcgaagtgtcagtgattgggccagcccagagctgggttgac
ctctttgagggaaaagtcatcatattagatataaatgataacaccccctctttcccttcc
cctgtcctgacactgtctgtggaggaaaacagacccattggaaccctttatctgctgccc
acagctacagacagagattttgggagaaatggaatagagcgatatgagcttatacaggac
aatggggaaaactcaaggcgtttgggctcttctggggattcattcaacgggaagaggaga
tttgaagaagccgcaagcaggagcagcgtctttgaactgcaagttgctgatactagtgat
ggagagaagcagcctcaacttatcattaaaggggcccttgatagggaacagagagactcc
tatgagcttacgctgcgagttagggatggaggagacccccctcgctcctcccaagccatt
cttagggtgatgatcactgatgtgaatgacaacagccctcgctttgagaagagtgtgtat
gaagctgacttaccagaaaacagctcccctggcgcccccatactgcagctcaaagcggct
gatgcagacgtgggggttaatggtcaaatagagtatgtgtttggggcagccacagagtca
gtgaggaggctgctgaggttggatgagagcacagggtggctgagtgtgttgcaccgcatt
gaccgtgaagaagtgagccaactgaggttcacagtaatggcccgtgaccgaggtcagcca
ccgaaaatggacaaggccactgtggtgttgaacatcaaggatgagaatgacaacgttcct
gctatagagataaggaaaattggacgcatattcttaaaagatggcattgctaacgtggcg
gaggatgtggtggtggacacacccattgccttagttcaggtgtcagaccgcgaccaggga
gaaaatggcattgtcacctgcacagtggtgggggatgttccctttcagctcaaaccagcc
agcgagatggagggagatcagaataaaaagaaatatttcctccacacttctgcaacgctg
gactatgaggccacacaggaatacaatgtggtcatagtggctgtggactccggaagcccc
agtcttgcaagtaataactctgttatcgtcaaagttggcgacactaacgacaaccctcct
atcttcagccagaacgtagtagaggtgtcctttctggaaaacaatgcccccggagagagg
gtgacaacagtgaaagccattgacgcagatagtgggaagaatgctgaaatagcctattcc
ctagactcatctgtaaatgggattttctccatcgatgcagacagtggagacatccgagta
aacaccattctggatagagagcaaacagagcgctacgaattcaaagtgatagccaaagat
aagggcataaacactctacagggctctgcaacagtggtcgtccttgtggcagacaagaat
gacaatgagccaaagttcatgcaggatgtgttcaccttctacgtcaaagaaaaccttgag
ccaaacagcccagttggcatggtcacagtcatcgacgcagataaaggccaaaatgcagag
atgcgtcttttcattgaggaagaggaggaaaacttttctattgaaaatgacactgggact
attttctctaccttgtcctttgacagagagcagaaaactacatacacattccgagtcaaa
gctgtagatggtggagaccctcccagatctgccaccgccacagtttcactctctatcatg
gatgaaaatgacaatgcaccaacagtgactttcccattaaacagctcctacacccttctt
cctccctccagtaacatcagaacagtagtcagaacagtcatagccactgacacagacacc
gccgttaacgcagacttgagctacagcatcattgggggaaaccccttcaggctgtttgag
attgatgggggcactggtgtcatttcactggtggggaagttggagcagaagcactatggc
ctccacagacttgttgtccaggtgaacgacaagggccagccttcacagagcaccaccacg
ctggtccatgtgtttgtcaatgagactctttcgaattccacagttgtggaggcccaggtg
gctaggagcctaagcacatctctgaacaccaacattgccggtgaccccaactatgatctg
agcaaacagcggctgagcattgtaatcggagtagtttcgggcatcatgacggtaatcctc
attattctagtcgtcgtcatggcccgttactgccgccctaagaataagaatggctacgag
gctggaaaaaaggatcatgaagacttctttacgccacagcagcacgataaggctaagaag
cccaagaaagataagaaaaaactgaagtccaaacagccactttacagcagtattgtcacc
gtagaggcctccaaacccaacgggcagcgctacgatggcgtcaacgagaagctgtcggac
agccctggcatgggccgctaccgatcggtcaacggagggccggggagcccagatctggcc
cggcactacaagtcaagttcacccctccctactgtccagcttcacccgcagtcaccgaca
gctggaaaaaagcaccaggcagttcaggacctgccccctgccaacacctttgttggcact
ggagataacatttcccttggatctgaccactgctctgaatacagcagtcaaactatcaac
aagtacaacaaacagccgtttcgccgtgtgaccttctcggtggtgagccagccccaggac
cctcaccagcagggatcgctgcagagctgctacgacagcggcctggacgagtcagagacg
cccagcagcaagagttcgtcgggcccccggctgggcgcccttcccctgcccgaggacagc
tacgagaggacaacgccggatggcagtgtcggtgaggcagagcacttggaaaatgactcc
cggcctttgcctgacgtagccatgactggcaagtgcacccgggaatgtgacgagtacggc
cactccgactcctgctggatgcctgtgcgcacgtcgcctgagcgacggccatccaagtca
accactacccctcaacaaccaaagctttccactttcatgagcggcaacggcagcagcagc
agcagcagcagctctgagcagcccgacagccaagagaccctcgccatggccgccatggcc
aatggagaccccaccgctgctcacatgatgggcgaccgcaatcgtaacctgctcaacaag
aagatggcttcctcctcctcctcctacgaggccttcggctcgccttcctacagctcgcca
gaaaatggggaggaagtgctgcgccaccccactgaggagatccctctggcacctaccggg
gagtacaagcccacttcctgtggtactctgacgagacgggaggtgtacctgtga
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