Trematomus bernacchii (emerald rockcod): 117488191
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Entry
117488191 CDS
T09643
Symbol
pcf11
Name
(RefSeq) LOW QUALITY PROTEIN: pre-mRNA cleavage complex 2 protein Pcf11
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
117488191 (pcf11)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117488191 (pcf11)
03019 Messenger RNA biogenesis [BR:
tben03019
]
117488191 (pcf11)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
117488191 (pcf11)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
117488191 (pcf11)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Pcf11_helical
CID
Pfc11_Clp1_ID
PCF11_charged
zf_PCFS4
Pcf11_C
SHOCT
Motif
Other DBs
NCBI-GeneID:
117488191
NCBI-ProteinID:
XP_033992882
LinkDB
All DBs
Position
Unknown
AA seq
1498 aa
AA seq
DB search
MADKDACREYLSSLEDLTFNSKPHINMLTILAEENLHFAKEIVAIIEAQISKAPSAEKLP
VLYLVDSIVKNVGGEYLAVFAKNLITSFICVFEKVDENTRKSLFKLRSTWEDVFPLKKLY
ALDVRVNSVDPAWPIKALPPSVSNASIHVNPKFLKQSDDAPSPQPTPSKPPALQALPPPL
QTTPPAPQAQPPPQLTPVPPSSLTQESLIRQQLLAKQKQLLELQQKKIELELEQTKAQLM
GGFVMPPAVPVKPGPPAAPGVRPWLPPPQPDPKPPTRDPRLNRAAGTPTGKKEGHAHTGS
AAGTPEKPPRPEKPRTPRKEAPKPPTTTSSSPTTKSVQMKPKPAENETKKDPRLKKRGGG
AVKEEELKKKKEEPLRGGGNKGKLLNGSKHDEEKMEFKAGGNARTHARKRSRSPPVSPPK
RKERRRTRSSSLSPPPPLHKPGKTPRREPEHGKKKSQSESRRSKRPVEDPPHPPHSPRGH
DGAKEGKDGPAPPHRWRSGWEENKHPKPEDPHLKPATPRHKPYSAPTRPQTPRTPKHRLS
VDANMQIPEVLNSASKKDLLRRASKRLESGEISQEDFLNMAHQIKHFFQYQEEKQRPDSW
DPLSGLPRPPLTSGAPRPPLTSGGPRPPPAAMDAAELSYYEHKLKLRKTQVNRRAAGEEW
EGDESPEEAEGEGEGAPPPPPPPGKYSRGPRDRPGERRSKEAEEPRPPLGPMIEEYNHGK
EFPTLKSLPGLRFRRRADPREPTEREWTSPLMERQRLSEEKSGYEAPRRYDPRRPEAPPP
SQSPAEGLRFERERLSPXPKDPESPAPRFESPTSEHSDDGPLEAPPSHLPPPPPKSILKA
PIRPLTSVRHSDSPGHTPPQDGGPPPPPQRYDGGPPAPTNRPPAGWFEGGVRYDDPPRFD
GPHQPSRFEAGGPHHFDGPPHPSHGPMRGFEXGPPHPQGPGRFDGPPRFDGPGHFEGPMR
RFDPPGSGPMGFQQRPLHFDGPPNQMRFDGPMRFDSPGQQGPRFDLGPHQGGPPHYEGPM
RFGPQHNMQPPMRPMAPPLYDGPLAPQQNFNMAPQPMNPQQFPMAFPQPGGNFNLQPTYS
QPGPGNFYNPAAPAMQQPMLGALGQPFLPQSSGPYVQTPAPPPENHFGQVDVNDLLTKLI
SNGIIKPSLPDAPSNKEPVLVLPAAPPVAVEEEEEEAEEEEDENLPDLTGFKVDHMKLRY
ECVVLRLYSGNQCCLCSMRFTAKQTDLYADHLDWHFRQNHAGKVVGKRITHRRWYYGLRD
WVEFEEIADLEERAKSTFFEKVNEEEVQKSQAAAKEKEFQSVKATKDAVGELCEICQEPF
ETYWVEEEEDWFLKDAVRVDDKNFHPACFEDYKNTSSYMDVTPSPSKLLTEHPLTAFIKT
EEEEQGGRTSCAFAKVKQEVAEPMACSLPVVKSEEAEVLTAACPSEEGPSEEGPSEEGPS
EEGPSEEGRNEAVLSEGRNEAVLSEGRNEAVLSEVRSEDAGRNEDAGRNEDAGRSEAE
NT seq
4497 nt
NT seq
+upstream
nt +downstream
nt
atggcggataaagacgcctgcagggagtacctctcctctctggaggacctgacgttcaac
agcaagccgcacatcaacatgctcaccatcctggccgaggagaacctgcacttcgccaag
gaaatcgtggctattattgaagcgcaaatcagcaaggccccgtccgccgagaagcttccc
gttttgtacttagtggattccatagtgaagaatgttggaggagagtaccttgcagtgttt
gctaaaaacctaatcacttcatttatatgtgtctttgaaaaggtggatgagaacaccagg
aagagcctcttcaagctgcgctccacctgggaggacgtgtttcctctgaagaagctctac
gccctcgacgtcagggtgaacagcgtcgatcctgcctggccaatcaaagccctgccaccc
tcagtcagcaacgcctccatacacgtcaaccccaagttcctcaagcagtctgatgatgct
ccctctccccagccgactccctctaaacctcctgctcttcaggccctgccccctcctctt
cagaccacgccccctgctcctcaggcccagcctcctccccagttgacccccgtccccccc
tccagcctgacgcaggagtctctgattcgtcagcagcttctggccaaacagaagcagctg
ctggagcttcagcagaagaagattgagctggagctggagcagaccaaagcccagctgatg
gggggctttgtgatgccccctgcagtcccggtgaaacccggccctccagctgctccgggg
gtccgtccctggctgcccccccctcagcccgaccccaaaccccccaccagggacccccgt
ctgaacagagccgccggaacccccaccgggaagaaagaaggccacgcccacacaggaagt
gctgctgggacaccggagaaacccccacgacccgagaagccccggaccccccgaaaagag
gcgccaaaaccccccaccaccacttcctcctctcccaccacgaaaagcgtccagatgaaa
ccgaaaccggcggaaaacgagaccaaaaaggacccccgtttgaagaagaggggaggtggg
gccgtcaaagaggaggagcttaagaagaagaaggaggagcctctgagagggggcggcaac
aaagggaagcttctgaacggatcgaaacacgacgaggagaagatggagttcaaagcgggg
ggcaacgctcgcacccacgccaggaaacgctcccgctcgccccccgtctcgcccccgaag
aggaaggagcgccgccggacgcggagcagctccctgtccccgcccccccccttgcacaaa
ccaggaaaaaccccccgacgggaaccagaacacggcaagaagaagagccaatcggagagc
aggaggtccaagaggccggtggaggaccccccgcaccccccccactccccccggggccac
gacggggccaaggagggcaaggatggcccggcccccccccaccgctggaggagcggctgg
gaggagaacaagcacccgaagcctgaggacccccacctgaagccggctaccccccgtcac
aaaccctacagcgcccccacccgcccccagacgcctcgcaccccaaagcaccgcctcagt
gttgacgccaacatgcagatccccgaggtcctaaactccgcctccaagaaggacctgctc
aggagggccagtaagcgtctggagagcggagagatttctcaggaggacttcctgaacatg
gcccaccagatcaagcacttcttccagtaccaggaggagaagcagcgccccgacagctgg
gatcccctcagtggtctccccagaccccccctcacctccggggcccccagaccccccctc
acctccgggggcccgcgaccccccccagctgccatggacgccgccgagctgtcgtactac
gaacacaagttgaagctgaggaagacgcaggtgaaccggagggcggccggagaggagtgg
gagggagacgagagtccagaggaggcggagggggagggggagggggccccgccgccgccg
ccgccgccagggaaatacagccgggggccccgagacagaccaggggagaggaggagtaag
gaggcggaggagccgcgcccccctctcggaccaatgatcgaggagtataatcacgggaag
gaattcccaactctgaagagtctgccgggactacgattcaggaggagagcagacccccgg
gagcccactgagagagagtggacgtctcctctgatggagcggcagcgcctcagtgaggag
aagagtgggtacgaggcccccaggaggtacgacccccgccgccccgaggccccccccccc
tcccagagccctgctgaggggctccggtttgagcgggagcgcctttcccccnncccgaag
gaccccgaaagccccgccccccgcttcgagagccccaccagtgaacactctgacgacggg
cccctggaggcccccccctctcacctgccccctccccctcctaaatccatcctaaaggcc
cctatccgcccgttgacctccgttcgacacagcgactccccaggacacaccccccctcag
gacggaggtcccccccccccaccacaacgctacgacggagggcccccagctcccacaaac
aggcccccggcgggatggttcgagggaggggtgcggtacgacgaccccccacgcttcgat
gggcctcatcaaccaagccggtttgaagctggggggccacaccactttgatggccccccc
cacccttctcacgggccaatgagaggcttcgagnngggccccccccaccctcagggcccc
gggaggtttgacggcccccctagattcgacggccccggtcacttcgaaggaccaatgaga
cgattcgatccccccggctctggtccaatgggcttccagcagcggcccctgcacttcgac
ggccccccaaaccagatgaggtttgacggcccgatgcggttcgattcccccgggcaacag
ggccccagatttgacctcgggccccaccagggggggcccccgcactacgagggccccatg
aggttcggcccccagcacaacatgcagcccccgatgaggccgatggcgccgcccctttac
gacggacccctggccccccagcagaacttcaatatggccccccagcccatgaacccccaa
cagttccccatggccttccctcagccgggggggaacttcaacctgcagccgacctacagc
cagccgggccccgggaacttctacaaccccgcggcccccgccatgcagcagccgatgctg
ggggccctcggtcagcccttcctgcctcagagctccgggccttacgttcagaccccggcc
ccccccccagagaaccactttggtcaggttgatgtgaacgacctgctcactaaactcatc
tccaacggcatcatcaaaccctcgctgcccgacgccccctccaacaaagagcctgtgctg
gttctccctgcagcgccccctgtggcggtggaggaggaggaagaggaggcggaggaggaa
gaggacgaaaacctcccagacctcaccggcttcaaagtggaccacatgaaactgcggtac
gagtgtgtggtgctgcggctgtactcggggaaccagtgctgtctgtgcagcatgaggttc
acggccaagcagacggacctgtacgcagatcacctggactggcacttcagacagaaccac
gcaggaaaggtggtcgggaagaggatcacacacagacgctggtactacggactgagggac
tgggtggagttcgaggagatcgcggatctggaggagcgagcgaagagcaccttcttcgag
aaagtgaacgaggaggaggtgcagaagagtcaagccgccgccaaggagaaggagttccag
agcgtgaaggccaccaaggacgccgtgggggagctgtgtgagatctgccaggagccgttt
gagacgtactgggtggaggaggaggaggactggttcctgaaggacgccgtcagggtcgac
gacaagaacttccaccccgcctgttttgaagattataaaaacacgtcgtcgtacatggac
gtgacgccgtcgcccagcaagctgctgacggagcacccgctgaccgccttcattaagacg
gaagaagaagagcaagggggcaggacttcctgtgcgttcgccaaagtgaaacaggaagtg
gccgagcccatggcgtgttcacttcctgtggtgaagagcgaggaggcggaggttttaacg
gcggcgtgtccgagtgaggagggcccgagtgaggagggcccgagtgaggagggcccgagt
gaggagggcccgagcgaggagggccgaaacgaggccgttctgagcgagggccgaaacgag
gccgttctgagcgagggccgaaacgaggccgttctgagcgaggtccgaagcgaggacgcg
ggccgaaacgaggacgcgggccgaaacgaggacgcgggccgaagtgaggccgagtga
DBGET
integrated database retrieval system
