Trematomus bernacchii (emerald rockcod): 117488326
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Entry
117488326 CDS
T09643
Symbol
tnn
Name
(RefSeq) tenascin-N
KO
K06252
tenascin
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117488326 (tnn)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117488326 (tnn)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117488326 (tnn)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117488326 (tnn)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
fn3
Fibrinogen_C
EGF_Teneurin
EGF_TEN
Ig_DSCAM-DSCAML_C
EGF_Tenascin
Fn3_Dep-1_4th
EGF_2
Fn3_Dep-1_2nd
EGF
hEGF
Motif
Other DBs
NCBI-GeneID:
117488326
NCBI-ProteinID:
XP_033993048
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MTSSLLWRALCLLVTLCTVSHFSSATHHPGPSAPEQGVTFSHVYKIDIPGTSSCKLESLP
AQDETGLQTETTSNGENDITFRHNIRLQTPKCDCEDSESFKSLLYRVNGLEEEVTYLKTA
CTQGCCGGGGAAGVDTSCSGHGTYQPETCSCLCNPGWEGPDCSVSSCPDECNDNGRCVDR
KCVCLQGYTGEDCSQLICPDDCNDKGQCVDGKCVCFPHFTGEDCSVQKCPNDCIGNGQCV
DGQCICEEGFYGEDCSLVLGPQGLRLVQVTDVSLLVEWESVRGAEYYILTYHPKDDESAL
KQVKVPNAENSHLITGLSPGVTYIVQVYAVIKEIQSEADKVEATTDVSTVDGIRVLGQTE
VSIKVDWKNPRSEVDHFRLTHINPAGQEEELNVKRSQEARTKHTIVGLFPGTEYQISVQA
IKGTSEGKPSSVTGATDIDSPTNLVTTEVTEDTATVSWDRVQAEIEGYMLSYTSADGSSS
DIPVGRESTSYRLVGLKPGVLHTVYIWAFKGDKVSKKSSTEAETELDAPTNFLARDETES
SFRVSWDHTKAEVDGYMLSYSSSEGLSEEIPVGSESTSYVLTGLRPGVLYTVHIWAIKGS
KPSRKISTQAETDLDAPANLLARDETESSFSVSWDPVQAEIDGYILTYSSSEGSSEEIPV
GSDSSSYRLTGLRPGVLYTVYIWAIKGSKASKKTSTQAQTDLDAPANLLARDETESSFSV
SWDPVQAEIDGYILTYSSSEGSSEEIPVGSDSSSYRLTGLRPGVLYTLYIWAIKGSKASS
KISTKAETDIDAPKDLKATDVSLESALMTWVPPLADIEGYILTYRYEEGNMETVEKQIGA
SESSFALSSLETGKKYIVTIIAYRGSKRSKVVETFFKTVGLVNPFPVDCTQVMKNGNKKS
GIYTLYLNNDRSKPFEGFCDMETDGGGWLVLQRRNTGKLDFMKRWKHCIAGFGNLTEEFW
IGLDKIYELTNTPTQYELRIELGLGAERAYAVYDDFKIATVKQKFRLTIGKYSGTAGDAM
TYHQGRPWTTIDNDNDIALGNCALTHRGAWWYKNCHLANLNGRWGDSRHSLGVNWEPWKG
HLVSLDFTEMKIRPLGAMSSRKRRSLMAREKSRATNPQKK
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgacttccagtctcctgtggcgggccctgtgcctgctggtgacgctctgcactgtgtca
cacttcagctccgccactcaccaccccggcccctcagctccagagcagggggtcaccttc
agccacgtctataaaattgacatccctgggacttccagttgtaaacttgagagcctgcca
gcccaggacgaaacaggtctgcagactgagaccacttctaatggggagaacgacatcacc
ttcagacacaacatcaggctgcagacaccaaagtgtgactgtgaggattctgaaagcttc
aagtcacttttgtacagagtcaatgggctggaggaagaagtcacctacctaaagaccgcc
tgtacccagggatgttgtggaggtggtggagccgcaggagtggacacaagctgtagtggg
catggtacctaccaaccggagacctgcagctgcctctgtaacccaggatgggaaggccca
gactgctccgtgtcctcctgccctgacgagtgcaatgacaacggtcgatgtgtggatagg
aagtgtgtgtgccttcagggctacacaggcgaggactgtagccagctgatatgtccagac
gattgcaacgacaaagggcaatgtgtggatggcaaatgtgtgtgtttcccacacttcacc
ggcgaggattgcagcgtccagaagtgtcccaacgactgcattggtaacggccagtgtgtg
gatggccagtgcatctgtgaagaaggcttttatggcgaagactgctcattagtcctcggc
cctcagggtctgcggctggtccaggtgacagacgtctctctcctggttgagtgggagtca
gttcgcggggcagagtattacattctgacatatcatcccaaagatgatgagagtgccctg
aagcaagttaaggttcccaacgcagagaactcccaccttattacagggttgagtcccggg
gtcacttacattgtccaagtttatgccgtcatcaaagaaatccaaagtgaagcagacaag
gtcgaggctaccacagatgtctccactgttgatggtatcagagttcttggccagacagaa
gtctccatcaaggtggactggaagaacccgcgttctgaggtggatcacttcaggctcaca
cacatcaacccagcaggacaggaggaggagcttaacgtcaagaggagccaagaggcgcgc
accaaacacactattgtcggtctgtttccaggaacagagtaccagatatcagtgcaggcc
atcaaaggaacctctgagggaaaaccttcctccgtcacgggagccacagacattgactct
cctactaacttggtcaccactgaagtaacagaggacacggcaacagtgtcatgggatcgt
gtccaggcagaaatcgagggctacatgttgagctacacctctgctgatggctccagcagc
gacatcccagtaggacgtgagagcacgtcgtacaggctggtcggcttgaagcctggagtt
ctccacaccgtctacatctgggccttcaagggagacaaagtcagcaagaagagttcaaca
gaagctgagacagagctggatgcccctactaacttcttggcccgagatgaaactgagtcc
agcttcagggtgtcctgggatcacaccaaggccgaagtcgatggctacatgttaagctac
agctcctctgagggcttgagtgaggaaatccctgtcgggtctgagagtacttcctacgtg
ctgactggcctcagacctggggtcctctacactgtccacatctgggccatcaaggggagc
aaacccagcaggaagatatccacacaagcggagacagacctggatgctcctgctaacctc
ttagcccgagatgagacagagtccagcttcagcgtgtcatgggatccagtccaggcagaa
attgatggctacatcctcacctacagctcctctgagggctctagtgaggaaatcccagtc
gggtctgacagcagctcttacaggctgactggcctgaggcctggtgtcctctacactgtc
tacatctgggccatcaaggggagcaaagccagcaagaaaacctcaacacaagctcagaca
gacctggatgctcctgctaacctcttagcccgagatgagacagagtccagcttcagcgtg
tcatgggatccagtccaggcagaaattgatggctacatcctcacctacagctcctctgag
ggctctagtgaggaaatcccagtcgggtctgacagcagctcttacaggctgactggcctg
aggcctggtgtcctctacactctctacatctgggccatcaaggggagcaaagccagcagc
aagatttcaaccaaagctgagacagacattgatgcccccaaggacctgaaggcaacagat
gtgtcgctggagtctgcccttatgacctgggttcctcctctcgctgacattgaggggtac
atcctcacctacagatatgaggaaggcaacatggagacggttgaaaagcagattggggcc
agcgagagcagttttgctttatccagtttggagacggggaagaaatacatcgtcaccatc
atcgcctacagggggagcaagaggagcaaggtggtggagaccttcttcaaaacagttggc
ctcgtgaaccccttccctgtggactgcacccaggtcatgaagaatggcaataagaagagt
ggcatatacacgctttaccttaacaacgaccgctccaaaccatttgagggtttctgcgac
atggagactgacggaggcggctggctggtgctgcagcgacgtaacaccggcaagctggac
tttatgaaacgctggaaacattgcatagccggctttggcaacttgacagaggagttctgg
attggtctggataagatatatgagctcaccaacactccgactcagtatgagctgaggatt
gaattgggactgggcgccgagagagcctatgctgtgtacgacgactttaagattgcaacg
gtcaagcagaagttcagactcactatcggcaaatacagtgggacagcaggtgacgctatg
acctaccaccaaggccggccctggactactatagataacgataatgacatcgcccttggc
aactgtgccctcacccaccgcggcgcctggtggtacaagaactgtcacctggccaacctc
aacggaagatggggagacagcaggcacagtttgggagtgaactgggagccgtggaagggc
cacctggtgtccctggacttcacagagatgaagatccgacctctgggagccatgtccagc
aggaagaggcgatcattgatggccagagagaagagcagagccacaaacccccaaaagaag
taa
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