Trematomus bernacchii (emerald rockcod): 117488470
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Entry
117488470 CDS
T09643
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1 isoform X1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
117488470 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117488470 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117488470 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
tben03029
]
117488470 (rb1cc1)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117488470 (rb1cc1)
Membrane trafficking [BR:
tben04131
]
Autophagy
Autophagosome formation proteins
ULK complex
117488470 (rb1cc1)
Mitochondrial biogenesis [BR:
tben03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
117488470 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
117488470
NCBI-ProteinID:
XP_033993280
LinkDB
All DBs
Position
Unknown
AA seq
1620 aa
AA seq
DB search
MKLYVFQVNNGSTLTFDTDLAVQTVLELKHAIQAKYKIAIQHQVLVVNGGDCMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLVKFDTSYVNYQH
DLEQIKVKLSKLGTSVSVMARIPLLECLTRHSYKESMEKSSSTPGKDSDETEEEKSTESV
LGPTEAQRPPKPSTFNSAPSQPTGDQETNEMTDSGGLRSALLDDEDDDDDGAELTNPSCF
NVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRIIQPFLTDCRDTIAKLDNQNMKTIKG
LEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVLPDLCLSHTNQLMIML
NNHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDAEKLQALLRLLTELMERVR
VVEALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKRLYEAEKFKRESFGKLFRK
SFLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISVDDLQYLKSCCPSEVQPFLLFSSRV
PTMCDFEPLNRHVETLHQLVKAAQSVDEMSQTITDLLNEQRTSYSQRSSVLTPQSGSMPG
SSTPRSPKTPSSLNLQGPICQPLHVPIPAPLEDLSPDSIDAQTFDFETIGHPNMDPVLQQ
GSLDLDSLAESPESDFMSAVNEFVIEENLTSPNPTSDPTSPEMMGESLYSSVINAIDNKR
MQDTTILERENSRIGVLKQEIDKYRSAAEESHSNFRSVKDDLHHLRGVVLKEQQDFGFVL
INMSTEVRNIVDNICEIHKLELKEQHESELLSLRQELGKQVQTLTEENQVNQNIVQRAML
ELEGRMERKEKELTQLENEKERWVETEGNQTGRIENLEQMIAEQIEEIKTLSASKESLSS
QLENLHFEIERSQQKIRQEMEVVEQSHLKEMEDKLKQEHADKLETLTQDNQEALKHQAAE
NSAKLSEAADHHATALKEKEKQRKDLEARVTELAELRCKVEVELALKESETEELRLLFEE
TKTQQAETVKSQVDAATVVLSEELAVIKQQLDVNNEEHEVGQAELRSMMRDEKDHCISEL
VDRHDEEIICVRNELASLQRHTQEAEKTHAEQQQELKQESEQQAAALSGEQEKQSRSFQD
QEQELRTAISDLQAENNLLSQQLEQVRQAMEKDLEKEQASEVKSQDAFKYIEQQKEEMEK
RLREKIKQLEAELHETQSSRSNEGMPLQAEGPTDTGAPLSLDSALQERLQQERASLLSQM
ELLEKRKNEEMQNLKTSLIAEQQTNFNTVLTREKLKKEQIIHDLTEQLNQVTQQQEKDKA
LIEKLCEDRASVMQEKKHLEEELNRMRSTTMVSSAFFTPHPSALETLEAGGAAARALPLA
FSSEPQSESDRLASVAAIGEDEQIDSAVEASMVTVHDNILMTEEKQRILLLERTLHMKEE
ENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDERHDNYVLFTVGPTLYFLH
SESLTALDLKPASGTTRRPWVLGKVMEKEYCQAKKAQNRFKVPLGTKFYRVKAVPWNRKV
NT seq
4863 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggcagcacattgacatttgacactgatctt
gctgtccaaactgtactggagcttaaacatgccatccaagccaaatataagatcgcaatc
caacatcaagtccttgttgtcaatggaggggactgtatggctgcagagaggcgggtctgc
agttacagtgctggcactgaaacaaaccctatattcctgttcaacaaagagatgatcttg
tgtgacagggatccaacgatccctaagaccaccttctcgattgagagtgagattcaggtt
aaggtggaagaatctctactgatgccagctgtctttcacactgttgcctcgcgaacacaa
cttgctctggaaatgtttgaagttgccaagaagctttgctctttctgtgaacgattggtt
catgatgaacaccttcaacaccaaggctgggctgccatcatggctaatctggacgattgc
actctgtcttatcagaagttgcttgtgaaatttgacacttcatacgtaaattatcaacat
gacttggaacaaattaaggttaaactttcaaagttagggacatcagtttctgtcatggcg
agaatacctctgctggaatgtttaacaagacacagttacaaagagagtatggagaagtcc
agctcaaccccaggaaaggattcagatgagacggaggaagagaaatccacagagtctgtg
ctcggcccaactgaggcacagcggccccccaagccatcaacattcaactctgctccaagt
cagccaactggagaccaggaaacaaatgaaatgactgacagtggtgggcttagatctgcg
ctattagatgatgaggatgacgatgatgatggtgcagagcttaccaacccgtcatgcttc
aatgtcacactattagactggatcaacgtgcaagaccgacccaatgatgtggaatctgtt
gtgaggaaatgctttgactccatcaataggcttgatccacggataattcaaccattcctg
acagattgtcgtgacacaattgccaagctagataatcaaaacatgaaaaccatcaagggg
ctcgaggacaggttgtacgctcttgaccaaatgattgcaagctgtaagaagttggtgaat
gaacagaaagaactcgctcagggatttttggccaaccagaagcgtgctgaaaacctgaag
gacacatctgttctgcctgacctgtgtctgagtcacaccaaccagctgatgatcatgctc
aacaaccacaggaagctgctagacattaagaagaagtgcaccactgccaaacaagaactt
gcaaacaaccttcaagtccgactcaaatggtgctgttacgtgatgcttcatgcggaccag
gatgcggagaagcttcaggctctactcagacttctgacggagttaatggaaagagtgagg
gtggtggaggccctcagcactgtgccccagatgtactgcttggcggtggtggaggttgtc
aggagaaaaatgtttatgcgccactacagagagtgggcttatgcacttgtcaaggatggg
aaacgactgtatgaggcggagaagttcaaaagggaatcctttggaaaactctttaggaag
tctttcctcagaaatcgtttgttcagaggactcgactcatggcctccaacatcgttttgt
acacgaaagcccagaaggtttgacgacgaacttccagacatctcagttgatgacctgcag
tacttgaaatcatgttgtccttcagaagtgcagcctttccttcttttttcctccagggtt
ccaacaatgtgtgactttgaacccttaaatcggcacgtagagacgcttcaccagctggtc
aaagcggcacagagtgtggatgagatgtctcaaactattactgacctgctaaatgaacaa
aggacatcctacagccagagatcatctgtgttgaccccgcagtctggaagcatgccgggg
tcctccacaccaagatcccccaaaaccccttcctctcttaaccttcagggccccatctgc
cagcccctacatgttcccatcccagctcctctggaagacttgtccccagacagcatcgat
gcgcaaacatttgactttgaaaccattggccacccgaacatggaccccgtcctgcagcag
ggctccctggacttggactctctagcagagagccctgaatctgacttcatgtccgctgtc
aacgagtttgtgatcgaagaaaacttgacctctccaaacccaaccagtgaccctaccagt
cctgagatgatgggggagtcgctgtactcttcagtcatcaatgctatcgacaacaagcgt
atgcaggacaccacgatactggagagggagaactcaaggatcggtgtcctcaaacaagaa
attgacaagtaccgatcggctgcagaggagtcccattccaactttagaagtgtaaaggat
gacctccatcacttgagaggcgtggttttaaaggaacagcaggactttggttttgttttg
atcaatatgtccacagaggtgcgcaacattgtggacaacatctgtgagatccacaaactg
gagctgaaggagcagcatgagagcgagcttctctccctgagacaagagctcgggaagcag
gttcagacactaacggaggaaaaccaagtgaaccagaatattgtccagcgcgccatgctg
gagctggaagggcgtatggagcgcaaagagaaagaactcactcagctcgagaatgagaaa
gagcgatgggttgaaacggagggcaatcagacgggtaggatcgaaaacctggagcagatg
atcgcggagcaaatcgaggagatcaagacgctgtcggcttcaaaagaatctctgagcagc
cagctggagaatctgcactttgagattgaacgaagccagcagaagatccggcaggagatg
gaagttgttgagcagtcccatttaaaggagatggaggacaaactgaagcaggaacatgca
gacaaactggagacccttacccaggataaccaggaggctctgaaacaccaggctgctgaa
aatagtgcaaagttaagcgaggctgctgatcatcacgcgactgcacttaaagagaaggaa
aagcaaaggaaggacctggaggctcgtgttaccgagctcgcagaactccgctgcaaagtc
gaagtggagctcgccctcaaagagtcggagacggaggagctgaggctcttattcgaggag
accaagacgcagcaggctgaaactgtgaagtcccaggtagacgctgcaactgtagtcctc
agtgaagagctggcagtcataaaacaacagcttgatgtaaacaatgaggagcatgaagtg
ggccaagcagagctgaggagcatgatgagggatgagaaggaccactgcatctcagagctg
gtggacagacacgacgaggagatcatctgcgttcgcaacgagctcgcctccctgcagcgc
cacacccaggaagctgagaagacccacgccgagcagcaacaggaactcaagcaggagtcg
gagcagcaagcggccgctctgagtggagaacaagagaagcagtccaggagtttccaggac
caggagcaagagctgaggactgctatcagcgatctgcaggcagaaaacaacctgctgtcc
caacaactagagcaagtcagacaagcaatggagaaagatttggaaaaggaacaggcctct
gaggttaaatcacaagatgcctttaaatatatagagcagcagaaggaggaaatggagaag
agactgagggagaaaataaaacagctggaggctgagctgcatgagacacaatcctcaaga
agtaatgaagggatgccgctgcaggctgagggccccacagataccggggcccctctgtct
ctggactctgctctgcaggagcggctgcagcaggagagggcctccctgctgtctcagatg
gagctcctggagaagaggaagaatgaggagatgcagaacctcaagacatcactaatcgca
gagcagcagacgaacttcaacaccgttctaacccgagagaagctgaagaaggagcagatt
atacatgatctcacagagcagttaaatcaagttacccaacagcaggagaaggacaaagct
ctgatagagaagctctgcgaggaccgagctagtgtcatgcaggagaagaaacacttggag
gaggagctcaaccgcatgcgcagcaccaccatggtctcctcggccttcttcacccctcac
ccctcagctctggagaccctagaggcaggaggagctgcagctcgagctctgcctctggct
ttctcctctgagccgcagtctgaaagtgacagactggcctctgtggcggccatcggagag
gacgaacagatagattcagcggtggaagccagcatggtgaccgtccatgataacatcctg
atgacagaggagaaacagcgcatcctcttactggagaggactttacacatgaaggaagaa
gaaaacaagcgcctcagtcaaagactgatgtctcaaagcatgtcgtctgtgtcgtcacgg
cattcagacaaaatcgccatcagagatttccaggtaggcgatttggttctgatcatcctg
gatgaaaggcatgacaactacgtgctgttcaccgtcggccccaccctctacttcctccac
tcagagtctctcactgcactggacctcaagccagcatcagggactacaagacggccgtgg
gttcttggaaaggtgatggagaaggaatattgccaggcgaaaaaggcccagaacaggttc
aaggttcctttaggaaccaagttctacagagtgaaagctgttccatggaacagaaaagta
taa
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integrated database retrieval system
