Trematomus bernacchii (emerald rockcod): 117488477
Help
Entry
117488477 CDS
T09643
Symbol
copb2
Name
(RefSeq) coatomer subunit beta'
KO
K17302
coatomer subunit beta'
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117488477 (copb2)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
tben04147
]
117488477 (copb2)
Membrane trafficking [BR:
tben04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
117488477 (copb2)
Exosome [BR:
tben04147
]
Exosomal proteins
Exosomal proteins of colorectal cancer cells
117488477 (copb2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
B-prop_COPA_B_2nd
TPR_COPA_B
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
WDR55
Beta-prop_WDR75_1st
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_1st
NBCH_WD40
ANAPC4_WD40
Beta-prop_HPS5
Beta-prop_SPT8
PEP5_VPS11_N
Beta-prop_IFT140_1st
WDR90_beta-prop_4th
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_SCAP
Beta-prop_IFT122_1st
Beta-prop_LRRK2
Beta-prop_WDR19_1st
Beta-prop_Vps41
Beta-prop_WDR35_TULP_N
BAF1_ABF1
DUF3682
Motif
Other DBs
NCBI-GeneID:
117488477
NCBI-ProteinID:
XP_033993296
LinkDB
All DBs
Position
Unknown
AA seq
949 aa
AA seq
DB search
MPLRLDIKRRLTARSDRVKSVDLHPTEPWMLASLYNGSVCVWNHETQTLVKTFEVCDLPV
RASKFVARKHWVITGADDMQIRVFNYNTLERVHMFEAHSDYIRCIAVHPTQPYILTSSDD
MLIKLWDWEKKWSCSQVFEGHTHYVMQIVINPKDNNQFASASLDRTIKVWQLGSSSPNFT
LEGHEKGVNCIDYYSGGDKPYLISGADDRQVKIWDYQNKTCVQTLEGHAQNVSCVSFHPE
LPIIITGSEDGTVRIWHSSTYRLESTLNYGMERVWCVCGLRGSNNVALGYDEGSIIIKVG
REEPAMSMDTNGKIIWAKHSEVQQANLKAMGDAEIKDGERLPLAVKDMGSCEIYPQTIQH
NPNGRFVVVCGDGEYIIYTAMALRNKSFGSAQEFVWAHDSSEYAIRESNSIVKIFKNFKE
KKSFKPDFGAEGIYGGFLLGVRSVNGLAFYDWENTELVRRIEIQPKHIFWSDSGELVCIA
TEESFFILRYMSEKVAASQENNEGVTEDGIEDAFEVQGEIQEIVKTGLWVGDCFIYTSSV
NRLNYYVGGEIVTIAHLDRTMYLLGYIPKDDRLYLGDKELNIVTYSLLVSVLEYQTAVMR
RDFGMADKVLPTIPKEQRTRVAHFLEKQGFKQQALAVSTDSEHRFELALQLGELKIAYQL
AVEAESEQKWKQLAELAISKCQFGLAQECLHHAQDYGGLLLLATASGNATMVGKLAEGAE
KDGKNNVAFMTYFLQGNLDQCLELLIRTNRLPEAAFLARTYLPSQVSRVVKLWRENLAKI
NQKAAESLADPTEYENLFPGLREAFAAEHYLRESCLGTTRPAKDFPLVTLNEDRNILEEA
QGYEPKGTFIPAIPKTQDSEESVAAAPVAAAVAAVMSSQPEPAAPTAVDKEEEEEEEEEE
EEEEEEEEKEEISQSQKENLDELEEDLDNMEIYDIDTTDVNLDDDFLDD
NT seq
2850 nt
NT seq
+upstream
nt +downstream
nt
atgcctctgcggctggatattaagcggaggctgacagccaggtcagacagggtgaagagt
gtggaccttcacccaactgagccatggatgctggctagtctgtacaacggcagtgtctgt
gtgtggaaccacgaaacacagactcttgtcaagacgtttgaagtatgtgacctccctgtc
cgagcttctaagtttgtggcaaggaagcactgggtcatcacaggagcagatgacatgcag
atccgagtgttcaactacaacaccctggagcgtgtccacatgtttgaggcccactctgac
tacatccgttgcattgctgtccatccgacccagccctatatcctcaccagcagtgatgac
atgttgatcaagctatgggactgggagaagaagtggtcttgcagccaggtgtttgagggg
cacactcactatgtgatgcagattgtcatcaaccccaaggacaacaaccagtttgccagc
gcctctctggacaggaccattaaagtttggcagctaggctcttcgtctcctaacttcacc
ctggagggtcacgagaaaggagtcaattgtattgactactacagtggaggagacaagcct
tacctcatctcaggggctgatgaccgccaagtaaagatctgggactaccagaacaagacc
tgtgttcagactctggagggccacgcccagaacgtctcttgtgtcagcttccaccccgag
ctgcccatcatcatcactggatcagaggacggtactgttcgcatctggcactcaagcact
taccgcctggagagcactctcaactatggcatggagagagtgtggtgtgtgtgcggcctc
aggggctccaacaatgtggcactgggctacgatgaaggcagcatcatcatcaaggtgggt
cgggaggagccggctatgtctatggacaccaacggaaaaatcatctgggctaaacacagt
gaagtacagcaagctaaccttaaagccatgggtgatgctgagatcaaggacggcgagagg
ctgcctctggctgtcaaagacatgggcagctgtgagatttaccctcaaaccatccagcat
aaccccaacggaaggtttgttgtggtgtgtggagatggagagtacatcatctatactgcc
atggctttgaggaacaagagcttcggctcagcgcaggagtttgtctgggcacatgactca
tctgagtatgccatcagggaaagcaacagtatcgtcaaaatcttcaaaaacttcaaagag
aagaaatctttcaagcctgactttggagctgaagggatctatggaggtttcttgcttggg
gtgaggtcagtgaatggcctggcattttatgactgggagaacacagagctggtccgccgt
atcgagatccagcccaaacacatcttctggtccgactctggtgaactggtctgcatcgct
actgaggagtccttcttcattctgcgttatatgtcagaaaaagtagccgcttctcaagaa
aacaatgaaggagtgaccgaggatggtatcgaagatgcctttgaggtccagggagagatc
caggagattgtgaagactggactctgggttggagactgcttcatctacaccagctctgtg
aaccgactcaactactatgtaggaggagagatcgtcactattgctcacctggacagaacc
atgtacctgctgggttacatacctaaagatgaccgtctgtacctgggagacaaggagctc
aacattgtcacttactccctgctggtctccgtcctggagtaccagactgccgtgatgagg
agggactttggaatggctgacaaggtgcttcccacgattcctaaagagcagaggaccagg
gtggcccatttcctggagaaacagggcttcaagcagcaggcgctggctgtgtccacagac
tcggagcacaggtttgaactggcgttgcagctgggagagttgaagattgcctaccagctg
gctgtggaggcagagtcggagcagaagtggaagcagttagcagagctggctatcagtaag
tgccaattcggcctggcccaggagtgcctgcaccacgcccaggattacggaggcctgctg
ctcctcgccaccgcctccggtaacgccaccatggtgggcaagctggctgagggggcagag
aaggacggcaagaacaatgtggccttcatgacctacttcctgcaggggaatctggatcag
tgtttggagctcctgatcaggactaaccgactgcctgaagctgctttcctggctcgcacc
tacctgcccagtcaggtgtcacgtgtggtcaaattgtggagggagaacctggctaagatc
aaccagaaggcggctgagtccctagccgaccccacagagtatgagaatctgttccccggg
ctgagagaagcctttgcagctgagcattacctcagagagtcctgcctgggcaccactagg
cctgccaaggatttccctctcgtcacactcaacgaagacaggaatattcttgaggaggct
cagggatacgaacccaaaggaaccttcattcctgcaatccccaagacacaggacagtgag
gagtcagtggcagccgctcctgtcgctgcagcagtagcagctgtgatgtcttcacagcct
gaacctgctgctcctacagcagttgacaaagaagaggaggaagaggaggaggaggaggaa
gaagaagaggaagaagaagaagagaaggaggaaatatcacagtcacaaaaggagaatctt
gacgagctggaagaggacctggacaacatggagatctacgacatcgacaccacagacgtt
aacctcgatgatgactttcttgatgactaa
DBGET
integrated database retrieval system
