Trematomus bernacchii (emerald rockcod): 117488486 Help Entry 117488486         CDS       T09643                                  Symbol rc3h1b Name (RefSeq) roquin-1b isoform X1   KO K15690   RING finger and CCCH-type zinc finger domain-containing protein Organism tben  Trematomus bernacchii (emerald rockcod) Brite KEGG Orthology (KO) [BR:tben00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03000 Transcription factors [BR:tben03000]     117488486 (rc3h1b)    04121 Ubiquitin system [BR:tben04121]     117488486 (rc3h1b) Transcription factors [BR:tben03000]  Eukaryotic type   Zinc finger    Cys3His zinc factors     117488486 (rc3h1b) Ubiquitin system [BR:tben04121]  Ubiquitin ligases (E3)   Single Ring-finger type E3    Other single Ring-finger type E3     117488486 (rc3h1b) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Roquin_1_2-like_ROQ ROQ_II zf-RING_5 zf-RING_UBOX zf-RING_2 zf-C3HC4_4 zf-C3HC4_3 zf-C3HC4 zf-CCCH zf-C3HC4_2 Prok-RING_4 zf-CCCH_4 zf-CCCH_UNK zf_CCCH_4 FYVE NS3_helicase_C Baculo_IE-1 RING_XB3-XBAT31 zf-RING_6 Motif Other DBs NCBI-GeneID:  117488486 NCBI-ProteinID:  XP_033993322 LinkDB All DBs Position Unknown AA seq 1120 aa AA seqDB search MPVQAPQWTEFLLCPICTQTFEETVRRPISLGCGHTVCKMCLNKLHRKACPFDQTAISTD IEQLPVNTALLQLVGGQVPKVQPVALITSPEDSQHYEEARQCVEELALYLKPLSNTRGVG LSSTAQSMLSRPMQRKLVTLVHCQLVEEEGRVRAMRAARSLGERTVTELILQHQNPQQLS SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEGGLRIAP DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL ANIDPSPDAPPPTWEQLEKGLVAVKTVVHGLVDFIQNHSKKGADPQQPPQHSKYKTYMCR DMKQKGGCPRGASCTFAHSQEELEKYRKMNKRLAARLPGSGGLMTDDGLPLDVAVTRKPS PLTNGSGGPSLPQLIARGTESVPYELLRKPMKMDGGSPNAPGSPPDGMDPMMPKPGMPPH GMAHPRMPVDHLSGKHMPVVARGSPVYPQAPHPDMCYDARPPPSASQYDPPQYPSGYPYQ QPPQYVPRDYMRNPPPPSESGPPYQDPYPGYGPPERPYQAPHSGPPFSYPHPPHHDRGRH GTYSGPPPPPQPYPSQRDGMVRMSPAPLDMPPPSTGQGNSLYHQEPSSRDRYPSDGYYTA GAQPPPMRTYVRGPSYSGSQPSLDYLHRRRQELLSQLEERKVISPPPFAASPTLPHSYPG DYPSEYGEESKNMVKCREPDYAGQYSPWSCETIGSYIGTKEPKPKDVMVPGSMDMMNAEA KSLREQSLEAPRRGAEVKDDDPIIPFGPQPTVSRFGAISRTSKTGYQTAGPVQAMASTPQ NPSSKHMAMPAEYPYGSHGGWGGASYPSHQTASSSQGHFSERLPMAATDREQLKIELQQV NQQINQQTQMRSMETASNSMLLQREAGQPGQAAAQQQKWPAGGVSTTSVSSEQLSMELHQ VEREIGKRTREMAMENQVAHDVQQYKMKPSENGQQDHKTQLEEISMALGEVSNGSSSLQD SAVGGSMLSLTNKTSAMSLCSDPGATGSEMQKNGVVHSCS NT seq 3363 nt NT seq  +upstreamnt  +downstreamnt atgccagtgcaagcaccacaatggacggagttcctgctgtgcccaatctgcacacagaca tttgaggagactgttcgtcggcccatcagcttgggctgtggacatactgtctgcaagatg tgcctgaacaagttgcaccgtaaggcctgtccctttgaccagacggccatcagcacagac atcgagcagctacctgtcaacacagccctgttgcagctggtgggaggccaggttcctaag gttcagccagtcgccttgattaccagtccagaggactcgcagcattatgaggaggcccgg cagtgtgtggaggagctggccctctacctcaagcccctcagcaacaccagaggtgtgggc ctgagcagcacagcccagagcatgctgagccgacccatgcagaggaaactggtaactctg gtccactgccagctggtggaggaggagggccgcgttagagccatgagggcagcccgctct ctgggggagagaaccgtcaccgaactcatcttgcagcaccagaatccacagcagctctct tccaatctgtgggctgctgtgcgtgcaagaggatgtcagtttctagggccagccatgcag gaggaagctctaaagttggtccttcttgctctagaggatggctctgctttgtccaggaag gtgttggttctctttgtagtccaaaggctcgagccacgcttcccgcaggcctctaagacc agcattggccacgtggtgcagctcctttacagggcctcctgcttcaaggtgaccaaacgt gacgaggactcatccctaatgcagctgaaagaggagttccgtacttacgaggctctgcgg cgcgagcacgactctcagatagttcagatcgccatggagggtggactgcgcatcgcacct gaccagtggtcttctctgttatatggagatcaatctcacaagtcccacatgcagtctatc atagataagctgcagaccccggcgtcttttgctcagagcgtccaggagctgacaattgcg ctgcagaggaccggagaccccgccaacctcaacaggttgcgtccccaccttgaactactg gccaacattgatcccagtcctgatgctccccctcccacttgggagcagcttgagaaaggc ttggtagcggtgaaaaccgtggtgcatggcctggtggacttcatccagaaccacagcaag aaaggagctgaccctcaacagccgccccagcacagcaagtacaagacatacatgtgccgt gacatgaagcagaagggaggctgtcctcgcggagccagctgcaccttcgctcattctcag gaagaactggagaagtatcgtaagatgaataagcgtctggcagctcgccttcctggctca ggtgggctcatgacagatgatggccttcctcttgatgtagcagtgactaggaagccctcc ccactcaccaatggtagcggtggaccctctttgcctcagcttattgcccgcggcacagaa tcagtcccgtatgaactgttgcgtaaacccatgaagatggatggagggagtcccaatgcc ccaggatcaccaccagatggcatggatccaatgatgcccaaacctggtatgccaccacat ggcatggcccaccccaggatgccagtagaccacctctctgggaagcacatgcccgtggta gccagaggctcgccagtgtacccccaggcaccgcatcctgatatgtgctacgacgctcgc ccgccaccttctgcttctcagtatgaccccccacaatacccctcaggctacccctaccaa cagccaccacagtatgtccctcgggattacatgcgtaaccctcctccccctagtgagtca ggacctccttaccaggacccctaccctggctacggccctccagagcgcccctaccaggcc cctcactccggtccacctttctcttatccacaccctccacaccatgaccgaggtcgtcac gggacctactccggccccccacctcccccgcagccttacccatctcagagggatggcatg gttagaatgagtcccgcccctcttgatatgccccctccatcaacaggacagggcaactcc ctgtaccaccaggagcccagtagccgcgatagatacccttcagatggctactacacagca ggtgcccagcctccacccatgaggacttatgtcagagggccatcatacagcggttctcag cccagcctggactacctgcaccgacgccggcaggagctgttatcccagttggaggaaagg aaggtcatctcccctccacccttcgctgcctcccccactcttcctcattcctaccccggt gattatccttcagagtacggcgaggaatccaaaaacatggtgaagtgcagagaacctgac tacgcagggcagtactctccctggtcctgtgaaaccattggctcctatattggaacaaag gaacccaaacccaaagacgtaatggttcctggttccatggacatgatgaatgcggaggct aagagtctgagggaacaatcgctggaagcccctcgtaggggtgcagaagtcaaagacgat gaccctattattccatttggcccccagcccactgtttcccgcttcggagccatctcccgc acctcaaagacgggctatcagaccgcaggccctgtgcaggctatggcctccaccccccag aacccaagctctaaacacatggccatgccagcagaatacccatatggaagccatggagga tggggtggagcttcatacccctcccaccagacagcctcctcctctcagggacacttcagc gagcggctacctatggcagctacagacagagagcagttaaagattgagctgcagcaggtc aaccagcagatcaaccaacagacccagatgcgcagcatggagactgccagtaactccatg ctgctgcagagggaggcaggccagccgggccaggccgcagctcagcagcagaagtggcca gcaggaggcgtgagcacaacatctgtctccagtgaacagctgagcatggagctccaccag gtggagagagagatcggcaagaggacccgtgagatggccatggaaaaccaagtcgcccac gatgtgcagcagtacaagatgaaaccctcagagaatggacaacaagatcacaagactcag ctggaagaaatctccatggctcttggcgaggtgtcaaacggctctagcagtctgcaggac agtgcagtgggcgggtccatgctgtcactgaccaataagacgtctgcgatgagcctgtgc tctgatccaggtgccactggttcagagatgcagaagaatggcgtcgtccattcctgctct tag

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