Trematomus bernacchii (emerald rockcod): 117488512
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Entry
117488512 CDS
T09643
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
tben03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
117488512 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
117488512 (acin1a)
03015 mRNA surveillance pathway
117488512 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117488512 (acin1a)
03041 Spliceosome [BR:
tben03041
]
117488512 (acin1a)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
117488512 (acin1a)
Spliceosome [BR:
tben03041
]
Complex C
Other components
EJC/TREX
117488512 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
117488512
NCBI-ProteinID:
XP_033993361
LinkDB
All DBs
Position
Unknown
AA seq
1703 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQRTSTNH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYDTNDQEDHTEVNNSTPCP
PPAQEAPPPLAEQHKPPGPSGGEGLFGAANEAEGNRNQEAHMSGPPASGSVAMRVPVAEH
RPERGSASNQVAADSNDDDSDDGDEDGDNDDWEGGARRRSNREPARAPASRERSGAPCQP
PPQHMPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAAAGRSSSTSSSGSSSS
DSRSSSPEPQRSAERKPGPLTLLARKMESEGAFSGAGWHRAAGVEGDGRGPLEGLVSAIT
HTANAAGHMSFSTIPGIPGAYPAHIQAPVSVLKATATEERDRERDSQLEREKALELERQE
KQRKEWAMEEERERAFALALEREEREKALQRERELALERERQVRELALAKEREERERAFA
QELERQRSLEQERLQRERKEREKREREEMERAIEQERARALEQERKERERALEQERLQRE
RALEAERIEREMALEQERLERERFEREKAIEQKRLEMERALEQERLEREKAIEKERRERA
IEQERLERERAQEQQRLALERKEKERIEREKVLEQERKERERALEQEEKERFEALERERK
EKERFDALERERKERFEALERERKEKERFDALERERKEKERFEALEREKERFEALERERK
EKERFEALERERKEKERFEALEREKKEKERFEALERERKEKERFEALERERKEKERAEKE
RLDREKALEQERFEKERLEREKALEQEKLERKEKERALEHEKLEKEKSLQKEKEAQETAL
EQEKERARMAEKERESHLPPFKRGRELGFTPLPTPTLLSTGPAAKSSAEEGEKVDAHAKS
SISPTPLSPQSTFKKFRFQREPPIQSSSPSMVIKRPRNFSDTPQPRALTVSALTEVTQQE
GPKSSTEQEDPQSSKAPEKETPISTTSPKKEEAKSLVLADKEKVDSAKMETESAAKEVDK
SKGPREDTAQRRGRETKKDEKHARKRSSSNDSSSSESDSGSSSSGSSSSSTSSREKTRDT
TRGKREEKPKKDLAQAKGIKEMPKVSPSKGGSSVEKRNVTADEGHNKKPFIEAPTREEPQ
SKKKDNDGEKETDKQRQVKETAMAEPEKLPETSEETPKAFSTRKISISSSKSSPGTGGAE
GEQDSGAAAGRKRRWGSSTAVTAKKPSFSITTESLKSLIPDIRPCLGQEAIVDLHPEEAA
LSGAEEEERERSDQDLQIRRTVTQVVHPESQENGQKEVKRSKHEDSEEEDVQGDKERTRA
HEEKDRNVMETQSPSHTSRDVEMNTVTPGDTLIRRSISQQKTGVSITIDDPVRTARQPSP
PRGKVSSIVHISNLVRPFTLGQLKELLSRTGTLVEEGFWIDKIKSHCFVTYCSSEEAVAT
RAALHGVKWPQSNPKVLSVDFCQQDELDFQKGLADRPGAEEPGAGRGRASGLPSLFPERE
QWAEREREMERREKARAEREWDRDKVRDFGKPGEEKEGDPQRSLSKEKRRKERAEGKEKK
KDKTAEDPPAKLLDDLFRKTKAAPCIYWLPLTDDNIAQREAARAERMKVREKRRKERDEE
EELKKREEERKERVKPAGGQTAERSEGEKEKEKEKEKEKSRDRERDRGRENDKRRDGYRR
PEGRGAGGGRRSRSRSDPRDRRR
NT seq
5112 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacggtagaccgctccagtcccttcgagttgcg
gatttaaaagctgctcttgaggagaggggactctctaaaagcgggcagaagaatgcactc
attaaaagactcaaaggggccctcatgctggagaatctgcagaggacctcaaccaatcac
atcggactgcagccaaactcacagattggagaagaaatgagccagaacagcttcatcaag
cagtatctggctaaacaacaggagctcctgaggcagcggctcgagagagaggcccgtgaa
gcatatgacactaatgatcaagaggaccacacagaagttaataacagtacaccatgccct
cctccagcccaggaagccccgccaccattggctgagcagcacaagccacccggcccctcc
ggtggagagggattgtttggggcagcgaacgaggcagagggtaacagaaaccaggaagcc
cacatgtccggtcctcctgcgtctggctctgtggccatgcgcgttcctgtcgcagagcac
cgaccagaaagggggtccgcctccaaccaagtcgcagctgacagcaacgatgacgacagt
gatgacggagacgaggatggcgacaacgacgattgggaaggaggcgctcgcaggagaagc
aacagagagccggccagagctcctgcgtccagagagaggtccggagccccctgtcaaccc
cctccgcaacacatgccttcccttctatcccctcaactccgccagccaacacctcctccc
tccccacctccagagttatcattccccttgccggacacccctaaacagagccccccaagt
ccagatgtagctgcagctgggcgttcgtccagtacttccagctccggctcctccagcagc
gacagccgcagcagcagcccggagccgcagaggagtgccgagcgcaagcccggcccgctg
acccttctggcccgcaaaatggagtcagaaggtgctttctctggagcgggttggcaccgc
gccgccggtgttgaaggcgacggcagagggcctttagagggtctggtttctgccataacc
cacacagccaatgcggcagggcacatgtccttttccacgattccaggcatcccaggagca
tatccggcccatattcaagcacccgtgagtgtgctcaaggccaccgcaacagaagagagg
gacagagagagggactctcagttggaaagagaaaaggcccttgagctggaaaggcaagag
aaacagagaaaagagtgggccatggaggaagagcgggaaagggcctttgcactggcttta
gaaagagaggaacgagaaaaggctttgcagcgcgagagagagcttgctctagagcgagag
agacaggtgagggaactcgctttggctaaagagagggaagaacgagagcgagccttcgca
caagagctggagagacagaggtccctggagcaggagcgtctgcagagagaaaggaaagag
agggagaagcgagagagggaagaaatggagagggccatagagcaggaaagagccagggct
ttggagcaggaaaggaaagagagagaaagggctctggagcaagagaggctacagagggaa
cgagctctggaggctgagaggatcgagagagaaatggctttggagcaggagaggctggaa
agggaaaggtttgagagggagaaagccatcgagcaaaaaagactagaaatggagagagct
ctggagcaggagagactcgagagggagaaagccatagagaaggagagaagagaaagagct
atagagcaggaaaggttggagcgggagagagcccaagagcaacagaggttagcgctcgag
agaaaggaaaaggagagaatcgagagagagaaagtgttggagcaagaaaggaaagagagg
gaaagggcattggaacaggaggagaaggagagatttgaagctctggaacgggagaggaag
gagaaggagagatttgatgctctggaacgggagaggaaggagagatttgaagctctggaa
cgggagaggaaggagaaggagagatttgatgctctggaacgggagagaaaggagaaggag
agatttgaagctctggaacgggagaaggagagatttgaagctctggaacgggagaggaag
gagaaggagagatttgaagctctggaacgggagaggaaggagaaggagagatttgaagct
ctggaacgggagaagaaggagaaggagagatttgaagctctggaacgggagaggaaggag
aaggagagatttgaagctctggaacgggagaggaaggagaaggaaagagccgaaaaagaa
aggctggacagggagaaggctctagagcaggagagattcgagaaggagaggcttgagagg
gagaaagctcttgagcaggagaaactcgagaggaaggagaaggagagggctctggaacac
gagaagctagaaaaggagaaatccttgcagaaagaaaaggaggcgcaggagacagccttg
gaacaggagaaagagagggctagaatggccgaaaaggagagggaaagtcacctccctccg
ttcaaacgcggccgcgagcttggtttcacccccctgcccactcctaccctcctctccaca
ggaccggccgcaaagtcatcggcagaggaaggcgagaaggtagatgcccatgctaaatcc
agcatctcaccaacacctctgtcgcctcagtccacattcaagaagttccgcttccaacgg
gagcccccaattcaatcgtcctcgccttccatggtcatcaagcggccccgtaacttctca
gacaccccccagccccgggccttaaccgtctctgcgctaacagaagttacacagcaggaa
ggacccaagtcctccaccgaacaggaagacccacagtcttccaaggcgcccgagaaggag
acccctattagcaccacgagtcccaaaaaagaagaggcaaaaagtcttgtattggcggac
aaagaaaaagtggattcagcaaagatggagacagaatctgcagctaaggaagtggacaaa
agcaagggtccaagagaggatactgcacagcggaggggaagagagacaaagaaggacgag
aaacatgcaagaaaacgatcatcgtctaatgactcctcctcctcagaatccgactctggg
tcttcatcgtccggctcctccagctcatcaacatcctctagagagaaaacccgtgacact
acaaggggtaaaagggaagagaaacctaaaaaagatctggctcaggctaagggcataaag
gaaatgccaaaagtctccccgagcaaaggagggtcgtctgtagagaagagaaacgtaact
gctgatgaaggccacaacaagaaacctttcattgaagcaccgaccagagaggagccccaa
agtaagaaaaaggacaacgacggagagaaggaaacagacaaacaaaggcaggtgaaggag
actgccatggcagagccagagaagcttccagagaccagcgaggagacaccaaaggccttc
tcaactcgtaagatctctatcagcagcagtaaatcgtccccgggcaccggcggtgcagag
ggcgagcaggactctggggctgcagccgggcgcaagaggaggtggggatccagcacagcc
gtcaccgccaagaaaccttccttcagcatcaccacggagtcactgaagtctctgatccca
gacattcgtccgtgcctcggtcaggaggccatagtggacctgcacccagaggaagccgcc
ctctccggtgctgaggaagaagagagggagcgctctgaccaggacctacagatccgacga
accgtcacacaggtggtgcacccggagagccaggagaatggacagaaggaggtgaagagg
agcaaacacgaggactcggaggaggaggatgtgcagggagacaaagagaggacaagagcg
cacgaggagaaggacaggaacgtgatggaaacccagtctccatcacacactagccgtgat
gtagaaatgaacactgtgaccccaggcgacaccctcatccgtcgctccatcagccagcag
aaaacgggtgtttccatcacaatcgatgaccctgttcgcacggcccggcagccctctcca
ccccgcggcaaagtctccagcatcgttcacatcagcaacctggtgaggccgttcactctg
gggcaactgaaggagctgctcagcagaaccggcaccctggtggaagagggcttctggatc
gacaaaatcaagtctcactgcttcgtcacctactgcagctcagaggaggccgtcgctact
cgtgcagctctccacggagtgaaatggcctcagagcaacccaaaagtccttagtgtagac
ttctgccagcaggatgagttggacttccaaaaaggcttggccgaccgacccggagcagag
gagcccggcgccggccgcggccgagcgtccggcctgccctctctcttccccgagcgagaa
cagtgggccgagcgcgagcgagagatggagcgccgagagaaggccagggcggagcgggag
tgggaccgcgacaaggtccgagacttcgggaaacccggcgaggagaaggagggagacccc
cagaggtcactctccaaagagaaacgccgcaaagagagggcggagggcaaggaaaagaag
aaagataaaacagctgaggatcctccggcaaagctgcttgatgatcttttccgcaaaact
aaagcagctccttgcatatactggcttccacttacagacgacaatatcgctcaacgggaa
gcggccagagcagaacggatgaaggtgcgcgagaaacggaggaaggagcgagatgaggag
gaggagttgaaaaaaagggaagaggagcgcaaggagagggtgaaacctgcaggcggccaa
actgcagagcggagcgagggtgagaaggagaaggagaaagagaaggagaaggagaagagc
agggacagagagagagacagaggtagggagaacgacaaacggagggatggttaccgtagg
ccagaaggccgcggggccggcgggggccgacgctcccgcagccgcagcgaccctcgagac
aggcggcgttaa
DBGET
integrated database retrieval system
