Trematomus bernacchii (emerald rockcod): 117488545
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Entry
117488545 CDS
T09643
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117488545 (ssrp1a)
03036 Chromosome and associated proteins [BR:
tben03036
]
117488545 (ssrp1a)
Transcription factors [BR:
tben03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
117488545 (ssrp1a)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
117488545 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_WDHD1
HMG_box_2
SSRP1_C
DUF4543
Motif
Other DBs
NCBI-GeneID:
117488545
NCBI-ProteinID:
XP_033993425
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MGDTLEFSDIYQEHKGSWNDGRLRFSKQTVVYKSSKTGKVDSIQAAELNLAHWRRVCLGH
GIKLGTNSGHVYKYDGFRDTDLEKISEFFKTNYKLEVMEKDMCVKGWNWGTTKFSGPLLA
FEINDNAAFEVPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQSDERQDPVE
AFAENVLSKADVIQATGDAVCVFKELQCLTPRGRYDIRIYPTFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEELSLTLNMSEEDVERRFE
GKLTKNMSGSLYEMVSRVMKSLVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQFTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEKKGMKGKIDEYSDSDEDQHDAYLERMKAEGKIREEGNESADSDGESD
ESFNPGEEDDDIAEEYDSNASASESDSGEDADDSDDTKKKKKEKKEKTVKVVKEKKERKP
RKERKRRPKEVGAPKRPMSAYMLWLNASRERIKSENPGISITEISKKAGEMWRTLSKEDK
EEWDIKAVEAKKQYEIAKQEFKDSGGGAAAAAASSSPQKESKKPAVKKEEKKRKSAGGDK
EKDRTVNDSFKSKEFIETSEDSSDSDKKSKSKKKKKKKKEESEEEEEAAASTPASSEADS
D
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atgggggacacactggagttcagcgacatctaccaggagcataaaggttcctggaatgat
gggcggttgcgtttcagcaagcaaactgtggtttataagagcagcaagacggggaaggtg
gacagcatccaggctgccgagctcaacctggcccactggaggcgagtgtgtttaggtcat
ggcatcaagctgggcaccaactcgggacatgtctacaaatacgatggcttcagggacacg
gatttagagaagatctctgagtttttcaagaccaactacaagctggaagtgatggagaag
gacatgtgtgtgaagggatggaactggggaacaaccaagttctcaggtccactgttagca
tttgagataaacgacaatgctgcgttcgaggtcccactgtccaacgtgtcccagtgcgcc
acggggaagaacgaggtcactctggagttccaccagaacgacgacaccgaggtctccctc
atggaggtccgattctacgtcccacccagccagtctgatgaacgccaagaccctgtggag
gcatttgctgagaatgtgttatctaaggctgatgtgatccaggccacaggagacgctgtg
tgtgtcttcaaagagctgcagtgtcttacacccagaggaagatacgatatccgtatctac
ccgactttccttcacctccacggtaagacctttgattacaagattccctacaccacggtc
ctccgtctattcctgctgccacacaaggaccagaggcagatgttctttgtgatcagtctg
gatcctcccatcaagcagggtcagacgcgttatcactttctcatcttgctcttctccaag
gaagaggaactcagcctcacccttaacatgagcgaggaggatgtggagcgccgttttgag
ggcaaactcactaaaaacatgtcggggtctctgtatgagatggtcagccgggtgatgaag
tccctggtcaaccgcaagatcactgtgcccggaaacttccagggtcactctggggctcag
tgcattacctgctcctacaaggcgtcctcaggcctcctctatcccctggagaggggcttc
atctacgtccacaagccccccgtgcacctgcgcttcgaggagatctcctgcgtcaacttc
gcccgaggaaccaccacaacacggtcctttgactttgagatcgagacaaagcagggaaat
cagttcactttcagcagcattgagagagaagagtacggcaaactgtttgactttgtaaat
gccaagaagctcaatatcaagaacagaggcttcaaagagaaaaagggcatgaagggtaag
atcgacgagtacagcgactcggacgaagaccagcacgatgcctacctggagaggatgaag
gccgagggaaagatccgagaggagggcaacgaaagcgccgactcggatggcgagagcgat
gagtcgtttaaccccggagaagaagatgatgacattgcagaagagtacgacagcaatgcc
tcagcaagcgagagcgacagtggtgaagatgccgacgatagtgatgatacgaagaagaag
aagaaggagaagaaggagaagacagtcaaagtggtgaaggagaagaaagagaggaaaccc
cgcaaagagaggaagaggaggccgaaggaggtcggcgcgcccaagaggccgatgagcgcc
tacatgctgtggctcaacgccagccgagagagaatcaagtctgagaaccccggcatctcc
atcacagagatctccaagaaggccggagagatgtggaggacgctgagcaaagaggacaag
gaggagtgggacataaaggcagtggaggcgaagaagcagtatgaaattgcaaagcaggag
ttcaaagacagcggcggaggagcggcggcggcggcggcgtcctccagtcctcagaaggaa
agtaaaaaacctgcagtcaagaaggaggagaagaagaggaagtccgccgggggagacaag
gagaaggatcgcaccgtcaacgacagcttcaagagtaaagagttcatcgagaccagcgag
gactcatcggactctgacaagaagagcaagtccaagaagaagaagaagaagaagaaggag
gaatctgaggaagaggaggaagcggctgcgtccacacctgccagctctgaggcagactct
gattaa
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