Trematomus bernacchii (emerald rockcod): 117488895
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Entry
117488895 CDS
T09643
Name
(RefSeq) sodium channel protein type 4 subunit alpha-like isoform X1
KO
K04838
voltage-gated sodium channel type V alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04261
Adrenergic signaling in cardiomyocytes
tben04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
117488895
09150 Organismal Systems
09153 Circulatory system
04261 Adrenergic signaling in cardiomyocytes
117488895
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117488895
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Sodium channel, voltage-gated (Nav)
117488895
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Na_trans_assoc
Na_trans_cytopl
IQ_SCN5A_C
PKD_channel
IQ
FixH
GPHH
Motif
Other DBs
NCBI-GeneID:
117488895
NCBI-ProteinID:
XP_033993940
LinkDB
All DBs
Position
Unknown
AA seq
1806 aa
AA seq
DB search
MAMSDPAPWTKHLEYTFTGIYTFESAIKILARGFCIVPFTFLRDPWNWLDFTVIIMAYVT
EFVDLGNVSALRTFRVLRALKTISVIPGLKTIVGALIQSVRKLADVMILTVFCLSVFALI
GLQLFMGLLRQKCIRSLAHCINSTYSPNASFICNNRTWSSRADFLGSEDNFYKVEGAKDA
LICGYGSDAGKCPDGFDCLKVGRNPNYGYTSFDTFGWAFLALFRLMTQDYWEQLFHQTLR
SAGKTYMIFFVLVIFLGSFYLVNLILAVVAMAYEEQNQATIAEAWQKEREFQLAMEHLRK
EQRLARKQQQAQDTDSVLSPELSPMCLKMGSIRRNSSRRRRSHRALSEETEEEAAEEKFD
PPDEPMPSLSPIPVHPLLATLSSHPLSTRRGSQASVFSAFRPRNNSEADFGDDEFSTHGD
TFRSRANSIATPWKRRTGSVRSHSSQVFTPNYNINGRLNITLDQNGVTTLGLHSPMSMPS
YSMERFREELPGSMEDTVPNLLLQPSPTITEPRPAQRKRVLSSVSFFSDAMGVDLFAELE
VSRQKCHPCWYTFANKYLIWDCCPWWLTLKEWVKYMVMDPFLDLGITICIVLNTLFMALE
HYPMTDEFNTMLSIGNLVFTGIFTAEMVLKLIAMDPYYYFQQGWNIFDGVIVCLSLMELG
LSNVEGLSVLRSFRLLRVFKLAKSWPTLNTLIKIIGNSVGALGNLTLVLAIIVFIFAVVG
MQLFGKNYQDCVCKISIDCQLPRWHMKDFFHSFLIVFRVLCGEWIETMWDCMEVAGQPLC
LLVFMLVMVIGNLVVLNLFLALLLSSFSSDNLSAPDEDGDLNNIQIAIARIESGFSWLTS
CIFDLCRRSSKQREQKAKEISKLVGNHVESNGGIFGRYGEKYIAPGEDSYMTNPNLTVIV
PIAPGESDVEFLEEEEISESSEDENSKPELVSLSEGSTVDLRKPGEEMDNISELAEENME
PEECFPQFCIRHCHCCEVDTSRGLGQAWWRLRKTCYQIVEHSWFETFIIFMILLSSGALA
FEDIYIEKRKVVKVVLEYADKVFSYIFVLEMFLKWIAYGFKKYFTNYWCWLDFLIVDVSL
ISLVANSLGYSDFTAIKSLRTLRALRPLRALSRFEGMRVVVNALIGAIPSIMNVLLVCLI
FWLIFSIMGVNLFAGKFGKCVNRTGFIHNVSLVNNKSECLSMNDTQFYWTKVKVNFDNVG
LGYLSLLQVATFKGWMEIMHAAVDSRGVEEQPIREINLYMYLYFVIFIIFGSFFTLNLFI
GVIIDNFNQQKRKLGGQDIFMTEEQKKYYNAMKKLGSKKPQKPIPRPTNILQAFFFDLVS
KQAFDIMIMMLIIINMVTMMVETDEQSERMESILNKINLAFIVIFTTECLIKIFALRCYF
FTVAWNIFDFVVIILSIVGIVLADIIEKYFVSPTLFRVIRLARIGRVLRLIRAAKGIRTL
LFALMMSMPALFNIGLLLFLVMFIYAIFGMANFAYVKKQDGIDDMFNFETFGNSMICLFQ
ISTSAGWDNLLSPIMASYSEECDLHFVNTGTNTRGNCGSPSMGIAFFVSYIIISFLIVVN
MYIAIILENFSVATEESTEPLSEDDFEMFYEVWEKFDSEATQFIEFSMLSIFADNLSEPL
RIAKPNRIKLISMDLPMVSGDRIHCLDILFAFTKRVLGESGEMDALKQQMEEKFMVTNPS
KISHEPITSTLRRKLEDVSAIIIQRCYRRHLVRRQMKQASYLYRQMNYETEVDVENAPAT
VGLIASMMQHYGIIDIVQTTEDTLLSSPPSYDSVTLAASDLSEVVRSISRDSELGEPGEN
YEETFL
NT seq
5421 nt
NT seq
+upstream
nt +downstream
nt
atggccatgtctgacccggcaccatggaccaagcacctggagtatactttcactggcatt
tacactttcgagtctgcgataaagatattagcgagaggattctgtatagtaccgttcacc
ttcttgagagatccgtggaactggctggacttcaccgtcatcatcatggcatatgtgacc
gaatttgtagacctggggaacgtctcagcgttaagaaccttcagagtactgcgagcactg
aaaaccatctccgttatcccaggtctgaagacgattgtcggcgctctgatccagtctgtc
aggaagctggcagacgtgatgatcctgaccgtcttctgtctcagcgtgttcgccctcatc
ggcctgcagctcttcatggggctgctgcggcagaagtgcatccgcagcctggcgcactgc
atcaactccacctacagccccaacgcatcgttcatctgcaacaacagaacctggagctcc
agggcggacttcctgggcagcgaagataatttctacaaagttgaaggagcaaaggatgcc
ttaatatgtggatatggaagtgatgcagggaagtgtccagatggatttgactgcctaaaa
gtagggaggaatccaaactatggctacaccagttttgataccttcggctgggcattcctg
gccctcttccgactcatgacacaagactactgggaacaactgtttcaccagacgctgcgt
tcagcaggaaagacctacatgattttcttcgtgctggttatcttcctgggctctttctac
cttgtcaacctcatcctggctgtagtggccatggcctatgaggagcagaatcaggcaaca
atcgctgaggcctggcagaaggagagagagtttcagctggcgatggagcatctgcgcaaa
gagcaaagattggcaagaaaacaacaacaagcacaggatacagactcagtgttgtcccca
gagctgtctccaatgtgtctgaagatgggcagcatacgtcgaaacagcagcagaagaaga
agatcgcacagggcattgtcggaggaaacagaggaggaagctgctgaagaaaagtttgac
cctcctgatgagccaatgccttctctgtctcctattccggtccacccgctactggccaca
ctctcttctcaccccctcagcaccaggagaggaagccaagccagcgtcttcagcgcgttc
cggccgcgcaacaactcggaggcggacttcggggacgacgagttcagcactcacggggac
accttcagaagtcgagcaaattcaatagcaacgccctggaaaagaagaaccggcagtgtg
cggagccacagctcccaagtcttcacccccaactacaacatcaacggcaggctcaacatc
accttagatcagaacggagtcaccactctgggcctacattctcccatgtccatgccctct
tacagcatggagaggttcagggaggaattgcctggcagtatggaagacacagttcctaac
cttctccttcagccttccccaacgatcactgagcctcgtccagcgcagaggaaaagagtc
ttgagctctgttagcttcttcagcgatgccatgggtgttgacctctttgcagagctggag
gtgtcgaggcaaaagtgccatccctgctggtacacgttcgccaataagtacctgatatgg
gactgctgcccctggtggctgacgctgaaggagtgggtgaagtacatggtgatggaccct
ttcctggatctgggtatcaccatttgcattgtgctgaacaccctcttcatggctctggag
cactacccgatgactgatgagttcaacaccatgctttccattggcaatctggttttcaca
gggatctttacagctgagatggtgctgaagctgattgccatggacccctactactacttc
caacaaggctggaatatttttgacggcgtcattgtttgcctcagtctgatggagttgggt
ctttccaatgtagaggggctgtctgtcctgcgatctttcagactgttacgagtcttcaag
ctggcgaaatcctggcccactctcaacactctcatcaagatcatcggcaactcggtgggc
gccctgggaaacctgacgttggtgttggccatcatcgtcttcatattcgccgtggtgggc
atgcaactgtttggcaagaactaccaggactgtgtgtgtaagatctccatcgactgtcag
ctgcctcgctggcacatgaaagacttcttccactccttcctgatcgtgttccgggtgctg
tgtggcgaatggatcgagaccatgtgggattgtatggaagtggccgggcagcccctctgt
ctcctggtgttcatgttggtcatggtcataggcaaccttgtggtgttgaaccttttcctg
gccctgttgctcagctccttcagctcagacaacctctctgctccagacgaagacggtgat
ttgaacaacatccagatcgccatcgcccgcatcgaatccggtttctcctggctcacatcg
tgcatcttcgacctctgcagacgcagctcgaagcagcgagagcagaaggccaaagaaatc
tccaagctggtcgggaatcacgtggagagcaatggtggaatttttggacgctatggagag
aagtacatcgcgccgggggaggacagctacatgacaaaccccaacttgactgtcatcgtt
cccatcgcacccggagagtccgacgtggagtttcttgaggaggaggagatttctgagtct
tcagaggatgaaaacagcaaaccagagctggtcagtctatcggagggcagtacagtggat
ctgaggaagcctggagaagagatggacaacatatcagagctggctgaggagaacatggag
ccagaggagtgcttcccacaattctgcatcaggcactgtcactgctgtgaggtggatacg
agccgcgggctgggccaggcctggtggaggctgaggaagacctgctaccagattgtggaa
cacagctggtttgagaccttcatcatcttcatgatcctgctcagcagtggggctcttgca
tttgaagacatctacattgagaagagaaaagtcgtgaaggtggtgctggagtacgccgac
aaggtcttctcctacatctttgtgctggagatgttcctcaaatggatcgcatacggcttc
aagaagtatttcaccaactactggtgctggctcgactttctcatcgtggatgtgtccttg
ataagcctggtagcaaattcactgggatattccgactttactgcgatcaagtccctgagg
actctacgcgctttgagacctctcagagctctgtccagattcgagggcatgagggttgtc
gtgaatgctctaataggagccatcccttccattatgaacgtgctgctcgtgtgtctcatc
ttctggctcatcttcagcatcatgggcgtcaacctgttcgctggcaagttcgggaagtgc
gtgaacagaactggtttcattcacaatgtctctttggtcaacaacaagtcagagtgcctc
tctatgaacgacacccagttctactggacaaaagtgaaggtcaacttcgacaacgtggga
cttggctacctttcccttctgcaagtggctacattcaaaggatggatggaaataatgcac
gcagctgttgattcaagaggagtggaggaacaacccatcagagaaatcaacctctacatg
tacctttactttgtcatcttcatcatattcggctccttcttcaccctcaatctcttcatc
ggtgtcattattgacaacttcaatcagcagaaaagaaagttaggtggacaggatatcttc
atgactgaagaacagaagaagtactacaatgctatgaagaaattaggatctaaaaaaccc
caaaagccaataccaaggcctacgaacattctccaagccttcttcttcgatcttgtgtca
aagcaagccttcgacatcatgatcatgatgctcatcatcatcaacatggtgaccatgatg
gtggaaaccgacgagcagtcagagcgtatggagtccattctcaacaagatcaacctggcc
ttcatcgtgatcttcaccactgaatgcctgatcaagatctttgccctccgctgttatttc
ttcacagttgcatggaacatctttgactttgtggtgataattctctccattgtggggatt
gttcttgcagacatcattgagaagtactttgtatctccaaccctgtttcgggtcatcaga
ctggcaaggataggacgtgtacttcgacttatacgtgcagccaaaggaataaggactcta
ctgtttgccttaatgatgtccatgccagcactgttcaacattggcctcctgctcttcctc
gtaatgttcatctatgctatcttcggtatggcgaactttgcctacgtgaaaaaacaagat
gggattgatgacatgtttaactttgagacctttgggaatagtatgatctgcctttttcag
atcagtacctcggcaggctgggataacctattgagtcctataatggccagctactcagag
gagtgcgaccttcactttgtcaatactggcactaacacccggggaaactgtggcagcccc
tcaatgggcatcgctttctttgtcagttacataatcatttcttttctcattgtggtaaat
atgtacatagctatcattctggagaacttcagtgttgccacagaggagagtacggagcca
ctgagcgaggatgattttgaaatgttttatgaggtttgggagaagtttgattctgaggcc
acgcagttcattgagttctccatgctgtcaatcttcgctgacaatttgtcggagccactg
cgcatagccaagcccaacagaatcaagctgatctccatggaccttcccatggtcagcggg
gatcggatccactgcctggacatcctgtttgccttcacaaagcgtgtcctgggagagtcg
ggtgagatggacgccctcaagcagcaaatggaagagaagttcatggtcaccaacccatct
aagatttcccacgagcccatcacttccacactgcgtcgcaaactggaagatgtgtctgcg
atcatcatccaaaggtgttacaggaggcatctggtgcgccggcagatgaagcaggcatcc
tacctctacagacaaatgaactatgagactgaagtggatgtggagaatgcaccagcaaca
gtggggctgatagcctccatgatgcagcactatggaatcattgacattgtacagacaaca
gaggacactctactgtcctcaccaccatcttatgacagcgtgaccctggcagccagtgac
ctctctgaggtcgtcagatcaatatccagagactctgaacttggggagcctggtgaaaac
tacgaggaaactttcctttga
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integrated database retrieval system
