Trematomus bernacchii (emerald rockcod): 117489010
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Entry
117489010 CDS
T09643
Symbol
si:ch211-114c17.1
Name
(RefSeq) pre-mRNA-processing factor 39
KO
K13217
pre-mRNA-processing factor 39
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tben03041
]
117489010 (si:ch211-114c17.1)
Spliceosome [BR:
tben03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
Other SAPs
117489010 (si:ch211-114c17.1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
HAT_Syf1_CNRKL1_N
HAT_Syf1_CNRKL1_C
TPR_19
TPR_16
TPR_11
TPR_15
TPR_12
UTP6_C
TPR_MalT
HrpB1_HrpK
TPR_21
Motif
Other DBs
NCBI-GeneID:
117489010
NCBI-ProteinID:
XP_033994126
LinkDB
All DBs
Position
Unknown
AA seq
721 aa
AA seq
DB search
MAAEGCDELSGNGELEESSAMEASEVPALPPTEMSEENGSPPEAPQVSVGPDPATFSMPP
ATEDEEGEIPADFERLWKAAHDNPQDFTSWTDLLQYCEQESHMTASRRALEAFLARYPLC
YGYWKKYADLERRAGYNNKAEEVCIQGLQVIPLSVDLWIHYINLLLGTLDMNLPESPDRI
RSVFEEGVSAAGLDFHSDRLWDLYVEWEKEQGNMKNATAVLDRVLRAPTQLYNTHYDKLK
EHLNGHEPKDVLSPEEYEELRAFCRQTQKAERAEQAQEEEEERPPGEEEPATPEGTDSEE
LMQKIREQVLIRRDKVYQDNEGEVRKRWNFEDAIKRPYFHVKPLDRVQLRAWHTYLDWEI
AQLNPDTKDPQQDPDQADTEGSEVTAKPQEETQDTAVSRDDYKVRILFERCLIACALYEE
FWIRYNQYLETQSVDEARAVLRRACEVHLANKPNIHLQWATFEERHGDLTEARRVLESLE
KSLPGLAVVRLRRAALERRAGQLDQSEALLREAVEESKEKPTLHAFYSIKLARLLLKLGR
NPGRARGVLQEALEISPDNDKLHLNLLELEVSGDPSAEAVQECVTRALAAPLAPHTKILF
SQRGLQFAEDYSNSIESVLSVYEEHQKLLKELGGTKREAENGDEETEKLMKSEDGSAVAV
SAQDPPTMPHVPITTPPPPVMGADASAQAGYGGYSSWYQQPQYGSYGYQNWNYNQGYYPP
S
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggcggcagaaggctgtgacgagttgagcggcaacggggagctggaagagtcctcagct
atggaggcgtctgaggttcctgccttgcctccgactgagatgtccgaagagaacggcagc
ccccccgaggcccctcaggtctccgttggccccgacccggccaccttctctatgcccccg
gctacagaggacgaggagggagaaatacctgcagactttgagcggctgtggaaggccgca
cacgacaatcctcaggacttcaccagctggaccgacctgctgcagtactgcgagcaagag
agtcacatgacagcgtctcgcagggcgctggaggctttcctcgctcgctacccgctctgc
tacggctactggaagaagtacgctgacctggagcgccgcgcaggatacaacaacaaagca
gaggaggtgtgtattcagggtctccaggtcatccctctcagtgtagatctgtggatccat
tacatcaatctgctgttggggactctggacatgaacctgcccgagtcccccgatcggatt
cgcagtgtgttcgaggagggggtttcagcggcaggtctggacttccactcagaccggctc
tgggatctgtatgtggagtgggagaaggagcagggcaacatgaagaacgcaacagccgtc
ctggaccgagtcctcagagcccccacccagctctacaacacccactacgacaagttaaag
gaacatttgaacggccatgagcccaaagacgtcctctccccggaggagtacgaggagctg
agggcgttctgtcgtcagactcagaaagcagagcgagcggagcaggctcaggaggaagag
gaggagaggccgcccggggaggaagagcccgcaacccccgagggcacagactcagaggaa
ttgatgcagaagatcagggagcaggtgctgattcgcagggacaaagtttaccaggacaac
gagggagaagtccggaagagatggaactttgaagacgctatcaaacgcccctacttccat
gtgaagcccctggaccgcgtccagctgagagcctggcacacctacctggactgggagatc
gctcagctgaacccggacaccaaagacccccaacaagatccagaccaggcggacacagag
gggtcagaggtcacggcaaagcctcaggaggaaacacaggatactgcggtttcccgcgac
gactacaaggtccgcatccttttcgagcgatgtctgatcgcctgcgctctgtatgaggag
ttctggatcaggtacaaccagtacctggagacgcagagtgtggacgaggcgcgggccgtt
ctgaggcgagcctgtgaggtccacctggcgaacaaacccaacatccacctgcagtgggcc
accttcgaggagaggcacggcgacctcacggaggcgcgccgggtgctggagtctctggag
aaatcgctcccggggttggcggtggtccgtcttcgcagggcggctctggagaggcgagcg
ggtcagctggaccaatcagaggccttgctgcgggaggcggtggaggagtccaaagagaag
cccacgttacacgctttttattccatcaagctggctcgcctgctgctgaagctcggcagg
aacccaggcagagcccgaggagttctgcaggaggcgctggagatcagtccggataacgac
aagctgcacctgaacctgctggagctggaggtgtcgggcgacccctcggccgaggcggtg
caggagtgtgtgacgcgagccctggccgctcccctcgccccacacaccaagatcctcttc
tcacagagaggcctgcagtttgcagaggactacagcaactctatagagagcgtgctgtcc
gtctacgaggaacaccagaaactgctgaaggagctgggcggaaccaagagggaagcagag
aacggagatgaggaaacagagaagctgatgaaaagtgaagacggctcggctgttgctgtg
tctgcacaagatccgcccaccatgccgcatgtccccatcaccacccccccgccccccgtg
atgggcgctgatgccagcgctcaggccggatacgggggatacagcagctggtaccagcaa
ccgcagtacggcagctacggataccagaactggaactacaaccaaggctattatcctccc
agctaa
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