Trematomus bernacchii (emerald rockcod): 117489052
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Entry
117489052 CDS
T09643
Name
(RefSeq) regulator of nonsense transcripts 1-like isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03013
Nucleocytoplasmic transport
tben03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
117489052
03015 mRNA surveillance pathway
117489052
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117489052
Enzymes [BR:
tben01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
117489052
5.6.2.5 RNA 5'-3' helicase
117489052
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
117489052
mRNA cycle factors
Common to processing body (P body) and stress granule
117489052
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
NAT10_TcmA_helicase
DEAD
UvrD-helicase
SRP54
AAA_16
UvrD_C_2
AAA_22
AAA_25
Motif
Other DBs
NCBI-GeneID:
117489052
NCBI-ProteinID:
XP_033994181
LinkDB
All DBs
Position
Unknown
AA seq
1112 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDPEEGELLGADTQSSEYDFTDFTLPSQTQTQGQTQSQLDNQVNG
HDGLLQNGDDPVLKAGQLLAELNFEEDEEDAYYTKDLPIHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTIPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATVVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGLDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPNQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQGVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSAYDRSNGRSSNMYFQTHDQIGMIGTGPNPMNSLNIP
IPFNFVMPPIPPPGYMGQVNGPSAGRGGGMKGKAGGGGGGGNRGGRQRNRGNMGNHSGGN
GGADRHGGHMSGSQASQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYLGD
EFKSQIDVALSQDSTYQGERAYQHGVTGLSQY
NT seq
3339 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtcgaggcgtacgggccgagctcgcagactctcacgttcctggaccccgaggag
ggcgagctgctgggagcggacacccagagctccgagtacgacttcaccgacttcaccctg
ccgagccagacccagacccaaggccaaacccagagtcagctggacaaccaggttaatggc
catgatggcctgctacagaatggagacgacccagtgttaaaagccggtcagttgctggca
gagttgaactttgaggaggatgaggaggacgcgtactacaccaaggatcttccaatacat
gcctgcagttactgtggtattcatgatccagcctgtgtggtctactgcaacaccagcaag
aagtggttctgtaacggccggggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagatggccctctgggggaaactgtgctg
gagtgctacaactgtggctgtcgcaatgtcttcctgttgggcttcatccctgccaaggcc
gactctgtggtggtgctactgtgcaggcagccatgtgccagccagagcagcctgaaggac
atcaactgggacagctcgcagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctggtgaagatcccctcggagcaggagcagctcagggcccgtcagatcaccgcccagcag
atcaacaagctggaggagctctggaaggaaaatcccactgcgaccttggaggacctggag
aagcccggcgtggacgaggagccccaacatgtgctgctccgatatgaggacgcctaccag
taccagaacatctttggtcctcttgtgaagctggaggccgactatgataagaaactcaaa
gagtctcagactcaagacaacataacagtaagatgggacttgggcttgaataaaaagagg
attgcttatttcactattcccaagacggactcggatatgcgactgatgcagggagatgaa
atctgcctgaggtacaaaggggatctggcccctccgtggaaaggcatcggacatgtcatc
aaagtccccgataactatggtgatgagattgccatagagctcaggagcagtgccggcgct
ccagtggagatccctcacaactttcaggtcgactttgtgtggaagtccacttccttcgac
aggatgcagagtgccctgaagacatttgctgtggacgagacttcagtgtctggttacatc
taccacaagctgctgggacacgaggtagaggacgtggtgatcaagtgccagctgcccaaa
cgcttcactgctcaaggcctgcccgacctcaaccactcacaggtgtacgcagtgaagacg
gtgctgcagcgtcctctcagtctgatccagggtcctcctggcacggggaagacagtcacc
tctgccaccgtcgtctaccacctggccagacagggcaacgggccagtgctggtgtgtgct
cccagcaacattgcggtcgaccagctgacggagaagatccaccagacgggcctgaaggtg
gtgaggctgtgtgccaagagcagggaggccattgactcgcctgtgtccttcctggctctg
cacaaccagacccgcaacatggacagcatgccagaacttcagaagctgcagcagctgaag
gacgagactggagagctgtcgtcctcagacgagaagcgctacagagctctgagacgcacc
gctgagagggaactgcttatgaatgccgatgtgatctgctgcacctgtgttggggcgggg
gatcctcgtctggccaaaatgcagttccgctcgatcctgatcgatgagagcacccaggcc
accgaaccagagtgcatggtgcccgtggtcctgggcgccaaacagttgattctggtgggt
gatcactgccagctgggcccggtggtgatgtgtaagaaggcggctaaagccggtctgtcc
cagtctctgtttgagcgtctggtggttttggggatccggccaatccgcctgcaggtccag
taccgcatgcacccggccctcagcgcctttccatccaacatcttctacgagggctctctg
cagaacggagtcactgcggcggaccgagtgaagaaaggccttgacttccagtggccgcag
cccgacaagcccatgttcttctatgtgacccaaggccaggaggaaatagccagctctgga
acatcctatctcaacaggactgaggcagcgaatgtggagaaaataaccaccaggttgctg
aaggctggagccaaacccaatcagatcggcatcattacgccctacgagggtcagaggtcc
tacctggttcagtacatgcagttcagcggttccctccataccaaactctaccagggggtg
gagatagccagtgtggatgcctttcaaggcagagagaaggacttcatcatcctctcctgt
gtgagggccaatgagcaccagggcatcggcttcctcaatgacccccgacgtctcaacgtg
gcactcactagggccaggtatggtgtgattattgtgggaaacccaaaggctctgtccaag
cagcctctgtggaaccacctgttgaattactacaaggagcagaaggtcctggtcgagggg
cccctgaacaacctgagggagagcctcatgcaattcagcaagccccgcaagcttgtcaac
accatcaaccctgggggacgattcatgagcacagccatgtatgatgccagggaggcgctc
attcctggatctgcttatgaccgcagcaacggacgttcatccaatatgtatttccagacc
cacgaccaaattggtatgatcggcaccggccccaatcccatgaattccctgaacatcccc
atccccttcaactttgtgatgccccccatacctccacctgggtacatggggcaggtcaat
ggaccctcagcaggtcgtggtggaggaatgaaaggcaaggcaggcggtggaggaggaggc
gggaatcgaggtggccgtcaaagaaaccgcggcaacatggggaaccacagcggagggaat
ggaggagcagaccggcatggaggccacatgagcggcagccaggccagccaggacctgggc
tcccagtcgttctcccagggcccgctgacgcagggctacatcaacatgagccagccctct
cagatgagccagcccgggctctcacagcctgaactctctcaggacagttacctaggagac
gagttcaaatcccagattgatgtggcgttgtcccaggactccacctaccagggggagcgg
gcctaccaacacggtgtgactggactgtcccagtactag
DBGET
integrated database retrieval system
