Trematomus bernacchii (emerald rockcod): 117489129
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Entry
117489129 CDS
T09643
Symbol
vimr2
Name
(RefSeq) type III intermediate filament
KO
K05640
glial fibrillary acidic protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117489129 (vimr2)
09183 Protein families: signaling and cellular processes
04812 Cytoskeleton proteins [BR:
tben04812
]
117489129 (vimr2)
Membrane trafficking [BR:
tben04131
]
Autophagy
Chaperone mediated autophagy (CMA)
Other CMA associated proteins
117489129 (vimr2)
Cytoskeleton proteins [BR:
tben04812
]
Eukaryotic cytoskeleton proteins
Intermediate filaments
Intermediate filaments
Type III
117489129 (vimr2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Filament
PI3K_P85_iSH2
Filament_head
ATG16
FAD_binding_4
TPR_MLP1_2
DUF948
FAP206
Motif
Other DBs
NCBI-GeneID:
117489129
NCBI-ProteinID:
XP_033994244
LinkDB
All DBs
Position
Unknown
AA seq
388 aa
AA seq
DB search
MAMLRVSSYRKLFEDERWSRNGGSSAQCAGGYRASVRGASIDECDCDNLDFVAAKALNKE
GLSRFVQDRNVIGALNDRLVRVIELAHCFEEENESLECQIVDLEEQLSRRQASSSSSSVV
LPHFSLDAVVERLRRERDEILCDTEERQKELERLVTEYEKAAQQRNLLQQDRQDVAEDVD
AVTAECLALREQVAIYEEQLANMEAQHKTAVESMLEPDEGTTGAMRAITFGVPDITAALD
VKEYYCQLAESLQFECGAASSAVVPRGDGKQLQVGGATGSTVKDLSKMKDVSEVKKLIAE
LQKELAVLEKCNEELEDEVEMKKAAYMDEIAELEGTLDEMRQQEEDFQVQMKEQCEDYKE
LLSEKMARDMEITAYRSLLEEEECLCGQ
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atggccatgctgcgagtgtcttcctaccgaaagctgttcgaggatgaacgctggagtcgg
aatggagggtcgagtgcgcagtgtgcgggggggtaccgggcctccgtcaggggggcctcc
atagatgagtgtgactgtgacaacttagactttgtagctgcgaaggcgctcaacaaagag
ggtctgagccggtttgtccaggacagaaacgtcatcggtgccctgaacgaccgcctggtc
cgggttattgagctggctcattgttttgaggaggagaacgagtctcttgaatgtcagata
gttgatctggaggagcagctgagcaggcggcaggcctccagcagctcctcctctgtggtc
ctgcctcacttcagtctagatgctgtggtggagaggctgcgcagggagagggacgagatc
ctgtgtgacaccgaggagcggcagaaagagctggagcgtctggtgacagagtatgagaag
gccgctcagcagaggaacctcctgcagcaggaccggcaagatgtcgctgaggatgtcgat
gctgtgacagcagagtgtttggcgctgagggagcaagtggctatctacgaggagcagctg
gccaacatggaggcccagcacaagacggcggtggagagcatgctggagccagatgaaggg
acgacaggagcgatgagagctattacatttggcgtccctgacatcactgcggccctggat
gtgaaggagtactactgccagctggctgagagcctccagtttgagtgcggtgcagcatcc
tctgctgtggttccccgtggtgatggaaaacaactgcaagtgggaggagctacagggtca
acggtgaaagacctgtcaaagatgaaggacgtcagtgaagtgaagaagctgattgcagag
ctacaaaaggagctcgctgtgcttgagaagtgtaacgaggagctggaggacgaggttgag
atgaagaaggctgcgtacatggacgagatcgctgagttagagggtactttggatgaaatg
cggcagcaggaggaagacttccaggtgcagatgaaggagcagtgtgaggactacaaagag
ctgctcagcgagaagatggcccgagacatggaaataaccgcctacaggagtctgttggaa
gaagaggagtgcctgtgtggccagtga
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integrated database retrieval system
