Trematomus bernacchii (emerald rockcod): 117489279
Help
Entry
117489279 CDS
T09643
Name
(RefSeq) NLR family CARD domain-containing protein 3-like isoform X1
KO
K22614
NLR family CARD domain-containing protein 3
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04054 Pattern recognition receptors [BR:
tben04054
]
117489279
Pattern recognition receptors [BR:
tben04054
]
Cytoplasmic pattern recognition receptors
NOD-like receptors
117489279
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NLRC4_HD2
FISNA
NACHT
NOD2_WH
PRY
SPRY
LRR_6
DFF-C
LRR_4
Motif
Other DBs
NCBI-GeneID:
117489279
NCBI-ProteinID:
XP_033994375
LinkDB
All DBs
Position
Unknown
AA seq
1171 aa
AA seq
DB search
MDQCEDQEEGAPPSKSSLCGEHDRQTKAQSPEQTPHSAGPGPGSGHGPGPGPGPGPGPEP
GPGPGPEDGPEDRPEDGSGPSCKRRRIQQQRPGPSCVSMKSDFSMESRLYFKAGQSADES
LRIQQQRPGPGPGPRCESMKSDFSMQSPMNFKAGQSADERVLQEFSEVPSDQSAPKHHTD
LDSIFMLLEENIVTFVKNELKKIQKALSSDYPEGLESQSEEEEVLDGEDEEQRRSSREAF
LNISLHFLRSMKQEELAERLQSGTAAAVCSKLKSTLKERFQCVFEGIAKAGNPTLLNQIY
TELYITEGGSAEVNDEHEVRQIERASRKPDRPETTIRQEDLFKASPGRESPIRAVMTKGV
AGIGKTVLTQKFTLDWAEGKANQDIQFIFPFTFRELNVLRENKYSLVELVHQFFTETRDA
GICRFDQFPVVFIFDGLDECRLPLDFHNTEILTDVTESTSVDVLLTNLIRGKLLPSARLW
ITTRPAAANQIPPECVDMMTEVRGFTDPQKEEYFRKRFRDQEQAGTIISHIKTSRSLHIM
CHIPVFCWISASVLEDMLKTREGGELPKTLTEMYIHFLVVQSKVKNVKYHGGAETDQHWS
PESRKMMESLGKLAFEQLQKGNLIFYDHDLTECGINIRAASVYSGVFTQVFREERGLYQD
KVFCFVHLSVQEFLAALHVHLTFINSGVNLLSEEPTTSWWPKVKPTLTHLYQSAVDQALQ
SPNGHLDLFLRFLLGLSLQTNQKLLRGLLTQTGSDSETEEETVQYIKKKIEEDLSAERSI
NLFHCLNELNDHSLVEQIQMYLSSGRLSEENLSPAQCSALVFILLSSGKDLDVFNLNKYC
ASEEALLRLLPVVKASNKVLLSGCNLSERSCAALSSVLSSQSSSLRELDLSNNDLQDSGV
KLLSAGLESPHCELETISLSGCLVTEEGCVSLASALSSNPSHLSELDLSYNHPGDSGEKL
LSAGLEDPLWRLETLRMDHGGLQWLKPGLRKYACVLELDTNTAYRKLKLSDNNRTVTRVE
EEQRYPDHPERFNSRPQLMCREALTGRCYWEVEWRGGVHISVTYRGISRGDSEDCRFGEN
DQSWSLLCWGGGYSVCHNKTATHFSSFSSSSSPSGRVAVYVDHPAGSLSFYRVSSDTLIH
LHTFRTTFTEPLYAGFGFWSGSSVSLVPLQV
NT seq
3516 nt
NT seq
+upstream
nt +downstream
nt
atggatcagtgtgaggaccaagaggagggagcccccccctctaaaagctctctgtgtggg
gaacatgaccgccagaccaaagctcagagcccagagcaaacaccacactctgctggacct
ggacctggatctggacatggacctggacctggacctggacctggacctggacctgaacct
ggacctggacctggacctgaagatggacctgaagatagacctgaagatggatctggaccc
agctgtaaaaggagaaggatccagcagcagagacctggacccagctgtgtgtccatgaag
agtgacttttctatggagtctcgtctttactttaaagctggacaaagtgctgatgaaagt
ctcaggatccagcagcagagacctggacctggacctggaccccgctgtgagtccatgaag
agtgacttttctatgcagtctcctatgaactttaaagctggacaaagtgctgatgaaaga
gttctgcaggagttctcagaggttcccagtgatcagtctgccccgaagcatcacacagac
ctggactccatatttatgctgctggaggagaacatcgtcacttttgtgaagaacgagctg
aagaagatccagaaagctctgagttcagattacccagaaggcttagagagtcagagtgag
gaagaggaggtgttggacggtgaagatgaagagcagaggaggagcagcagagaggcattt
ctgaacatctcactgcacttcctgaggagcatgaagcaggaggagctggctgagcgtctg
cagagcggaactgctgctgcagtgtgcagtaaactcaaatccaccctgaaggagaggttc
cagtgtgtgtttgagggcattgctaaagcaggaaacccaacccttctgaaccagatctac
acagagctctacatcacagagggggggtctgcagaggtcaatgatgaacatgaggtcaga
cagattgaaagagcatccaggaaaccagacagaccagaaacaaccatcagacaagaagac
ctctttaaagcctcacctggaagagagtcaccaatcagagcagtgatgacaaagggagtg
gctggcattgggaaaacagtcttaacacagaagttcactctggactgggctgaaggcaaa
gccaaccaggacatccagttcatatttccattcaccttcagagagctgaatgtgctgaga
gagaacaagtacagcttggtggaactcgttcatcagttcttcactgaaaccagagacgca
ggaatctgcaggtttgatcagttcccggttgtgttcatctttgacggtctggatgagtgt
cgacttcctctggacttccacaacactgagatcctgactgatgtcacagagtccacctca
gtggatgtgctgctgacaaacctcatcagggggaagctgcttccctctgctcgcctctgg
ataaccacacgacctgcagcagccaatcagatccctcctgagtgtgtggacatgatgaca
gaggtccgagggttcactgacccacagaaggaggagtacttcaggaagagattcagagat
caggagcaggccggcaccatcatctcccacatcaagacctcacgaagcctccacatcatg
tgccacatcccagtcttctgctggatctctgcttcagttctggaggacatgttgaaaacc
agagagggaggagagctgcccaagaccctgactgagatgtacatccacttcctggtggtt
cagtccaaagtcaagaacgtcaagtatcatggaggagctgagacagatcaacactggagt
ccagagagcaggaagatgatggagtctctgggaaaactggcttttgagcagctgcagaaa
ggcaacctgatcttctatgatcacgacctgacagagtgtggcatcaatatcagagcagcc
tcagtgtactcaggagtgttcacgcaggtctttagagaggaaagaggactgtaccaggac
aaggtgttctgcttcgtccatctgagcgttcaggagtttctggctgctcttcatgtccat
ctgaccttcatcaactctggggtcaacctgctgtcagaagaaccaacaacctcctggtgg
cctaaagtcaaacctacactaacacatctctaccagagtgctgtggaccaggccttacag
agtccaaatggacacctggacttgttcctgcgcttcctcctgggtctttctctgcagacc
aatcagaaactcctaagaggcctgctgacacagacaggaagtgactcagagactgaagag
gaaacagtccagtacatcaagaagaagatagaagaggatctgtctgcagagagaagcatc
aacctgttccactgtctgaatgaactcaatgatcattctctagtggagcagatccaaatg
tacctgagttcaggacgtctctctgaagagaatctctctcctgctcagtgttcagctctg
gtctttatattactgtcatcaggaaaagatctggacgtgtttaacctgaataaatactgt
gcttcagaggaggctcttctgaggctgctgccagtggtcaaagcctccaacaaagttcta
ctgagtggctgtaacctctcagagagaagctgtgcagctctgtcctcagtcctcagctcc
cagtcctctagtctgagagagctggacctgagtaacaacgatctgcaggattcaggagtg
aagctgctgtctgctggactggagagtccacactgtgaactggaaaccatcagtctgtca
ggctgtctggtcacagaggaaggctgtgtttctctggcttcagctctgagctccaacccc
tcccatctgagcgagctggacctgagctacaatcatccaggagattcaggagagaagctg
ctgtctgctggactggaggatccactctggagactggagacactcaggatggaccatggt
ggactgcagtggttgaaacctggtctgaggaagtatgcctgtgtactggagctggacaca
aacacagcatacaggaaactcaaactgtctgacaacaacaggacggtgacacgtgtggag
gaggagcagcgatatcctgatcatccagagaggtttaactcccgtcctcagctgatgtgc
agagaagctctgactggtcgctgttactgggaggtcgagtggagaggaggggttcatata
tcagtgacttacagaggaatcagcagaggagacagtgaggactgtaggtttggagagaat
gatcagtcctggagtctgctctgctggggtggtggttactctgtctgtcacaataagaca
gcaacacacttttcctccttctcctcctcctcctccccctctggtagagtagcagtgtat
gtggatcatcctgctggctctctctccttctacagagtctcctctgacacactgatccac
ctccacaccttcagaaccacattcactgaacctctctatgctgggtttgggttctggtct
ggttcctcagtgtctctggttcctctgcaggtctga
DBGET
integrated database retrieval system
