Trematomus bernacchii (emerald rockcod): 117489452 Help Entry 117489452         CDS       T09643                                  Symbol stab1 Name (RefSeq) LOW QUALITY PROTEIN: stabilin-1   KO K19020   stabilin-1 Organism tben  Trematomus bernacchii (emerald rockcod) Pathway tben04148   Efferocytosis Brite KEGG Orthology (KO) [BR:tben00001]  09140 Cellular Processes   09141 Transport and catabolism    04148 Efferocytosis     117489452 (stab1)  09180 Brite Hierarchies   09183 Protein families: signaling and cellular processes    00536 Glycosaminoglycan binding proteins [BR:tben00536]     117489452 (stab1) Glycosaminoglycan binding proteins [BR:tben00536]  Hyaluronan   Cell surface receptors    117489452 (stab1) BRITE hierarchy SSDB OrthologParalogGFIT Motif Pfam:  Fasciclin EGF_3 EGF_STAB1-2 Xlink EGF_Teneurin cEGF FXa_inhibition EGF Motif Other DBs NCBI-GeneID:  117489452 NCBI-ProteinID:  XP_033994630 LinkDB All DBs Position Unknown AA seq 2546 aa AA seqDB search MLLLLLMICLQTSLQQEQTPPPGRCDVSQREEVRTSCTSCAAVSSSSCPRGFSQSGTLNC SYLVEISTKTLLLGGCRHTCVKGYMQPRCCPQHWGPLCLSCPSWSGKTCNYHGTCLDGDV GNGTCVCDESFSGFACQECKNPNSYGENCDKKCDCEHGVCNEGPEGDGQCLCQPPYTGKR CDQVSSRCNTCSPYSYCKGEGDAADCECLPGHRRMPQEKCASICSLRDCDVNAQCSSKGS KVSCACKPDYMGDGKICVPRNLCSENNGGCPIDSTICVFKGPNKSSCECMFGMSPIGGNA GFGCQLVSACSADTCDPTAACQTGVDGQPKCVCADHQIGDGRRCYGNLMERLIELDRSGS QRGTLTGAIALFEKGCSMQLSHDGPFTAFIPLLKTPLTGVNEELVCQNHLIEGQRLYKEL EGRDFNMLGGAKMRNKDNKKFILMDNPSKLYTIIQEDLPAANGIIHIIDQPMTNTLSDRS LRDEQFADKTIGEILTKDDKYNRFLSLVDNCGSPPPLRGLGPLTVFVPSNDAVDKSRDGS ILYMLNSAKYKLQELLRHHVFSRAGLTVAELATLPQIRTMANQIVTITVSEDGAILLGEK GIRLSSTNIMASNGIIHLIDGLLFPPSILPILPHRCDVTESKITVGPCVHCSYLFETDCP EGTTELDSHQTGCTYTVSRLNTQLSSGCAKFCNATNTVAQCCKGFYGPDCKPCIRGFEHP CYDKGTCFDGIQGNGSCSCQSGFKGVACHICADPSKHGEKCDEECHCVHGVCDNRPGSAG VCQRGSCLEGYSGEHCDRTATPCNSDGQQEHCHIHAYCTHTGLENKCWCRDGYDGDGHSC SPINPCLQSSRGGCDTNAKCEYAGPGNASCVCAEGWTGDGRVCVEINNCQLKRRGGCSPN ADCNHIGPGQSECVCKTGYMGNGIECDLINPCLEKNGGCHDLAKCELSTGGTHTCTCPDG FAGDGTLCYGTLLDELEMNPLLMHFIQLRHGDLTEDLSGNLTLLIPVRGAMVNMTTAFWT SRHHLPLFIRSHILLGIYSLEDLEKRVGSRLPTMNPPTYWEISNSTGVIRIGNASIRTPN LPAINGYIHIIDHILAPSLSDLPPEPPTLMAFLNSSSNFTLFRQYALMYNLSQKLHSCCQ QFTLLLPTDDAIRQHLSATNSSLMESDVFQYHVVFHDLLFPHHLSDGILKSTMLGDEYQV QFHLDKNNQTVVNDVPLDGTFTETQFGLILVLPQVLKVSRNRCSKQVYIQIRGRCTDCEG PPQCPLFKKPIKEQFPVNMRPNCNYRKRFGSRRKSVRGCVIKCIRESKHLSCCPGYYGHE CFKCPGDVGSRCYNHGECQDGNLGNGECRCFEGFHGTACEDCEPGRYGVNCSSKCVCDHG KCEDGLAGSGRCVCYXGWKGASCSAEIKDDACGGVCDENANCITGPQGTAAACVCVAGYE GNGTYCKELELCSRSNGGCSEFASCKKASAGERTCSCKEGFTGDGVICLEIDGCLVNNGG CHKSAECTRTGPNITACNCKMGFQGPGKFCYPVNPCNNNNGGCSRYARCEYFGQGQRNCS CLRSHVGDGFDCRGTTNTELSRQSENVFFRRMLSSSGVRGLYGDGPFTVFAPAVETNHDS SVLRNGNQFGRLPDLVRYHVVSCETLTLSDLKTTKLAVSTSGYTLHFSLQEGSVWVNNRS KIIKSDYTTSNGVIHHIDTMLTPYKLQDKPRIQYTKMNLTTAAAFYGYRRFYKLVEDAGL LPVLEMSVHQPYTMFWPTDDALNSLSAERQHWLSSPEHQDQVAALVKAHIIRNSRVMGVA QPDLLSAFRTMHGSTIKYNCDKTLVGAVWINGNAARVVERYLNFKEGLAYGIDQLLEPPG LGALCDSLNNRTTFGRCGRCLFPPTCPFNYPDTGKRERCTNMRTSRFRPQPWFTLDDPFS RMGCKRVCQVSSWVPKCCKNHYSRDCQVCPGGLEAPCGNHGDCDDGMSGSGRCKCHEGFI GKACELCTVGHYGPNCTACSCGQQGRCDTGIQGSGQCVCKPGWKGEHCEIDIGSIPEECL QCPAQADCVPGVGCQCKPGFQGNGTFCDPEPPPDLCAEYNGGCHQNADCNQTGLIVNCTC TSGYQGDGYSCEPINRCIEENGGCSDFASCKFTGPNERQCECLPGYVGNGVQCLEKVVSP VDRCLKDNGDCDPVATCKDLHYHANTAGVFHLRSPDGKYKMNFSQADAACRAEGAVLASF KQLGDAQQLGMHLCVAGWMEGGKVGYPTRFPSVKCGDNHVGLVIYKEPVDQSSMYDAYCF RLKGVSCVCSADYIGNGDFCNGVLTSVLASYSNFSIFYKLLLDYSGSSTEGKQLVDFMSH RKSEVTLFVPHNAGFAPNQTLSGRDLEYHISANHSRRPFKDLKHQEVIVSRLGFNLNVTY GKNESFKLVNKRLLVGWDIPAVNGIIHIIESPLTAPPAPISDRASSQGHTHSSGTVSAIL VSLLLLCVLAGLGYYVFKHKTDAFRFHYFRNEDEDGAAGGRMKPALVSIANPLYSGSRAF SEPFGDAGPSEPAQPDEPPQILDLSS NT seq 7641 nt NT seq  +upstreamnt  +downstreamnt atgctgctgttgctgctgatgatctgccttcaaacttcactgcaacaagaacagacgcct cctcctggtcgctgtgatgtctctcagagggaggaggtccgcacctcctgcacctcttgc gccgccgtctcctccagcagctgcccccgcggcttcagccaatcgggcaccctaaactgc agttatctggtggagatcagtaccaagactctcctgctgggtggatgtcggcacacctgt gtgaaaggatacatgcagccacgctgctgcccacagcactggggacccctgtgtctatcc tgtcccagctggtcaggaaagacctgtaactatcatggaacctgtctggatggagacgtg ggaaacgggacctgcgtctgtgatgaaagcttctctggctttgcctgtcaggagtgtaag aatccaaactcctatggagaaaattgtgataaaaagtgtgactgtgaacatggagtgtgt aatgaaggtccagagggggatggacagtgtctttgtcagccgccctacactgggaagcgc tgtgaccaagtgagttccaggtgcaatacctgcagtccgtactcgtactgtaaaggagaa ggagacgccgccgactgcgaatgtttgcccggacacaggaggatgccacaggaaaaatgc gcaagtatttgctctctgagggactgtgacgttaatgcccagtgctcctccaaggggtca aaggtcagctgtgcctgtaagccggactatatgggcgacgggaagatctgtgtacccaga aacctttgctccgagaacaacggagggtgtcccatcgactccaccatctgtgtcttcaaa ggacccaacaagtccagctgtgagtgtatgttcggcatgtcgcctataggaggaaacgct gggtttggttgtcagctggtctctgcctgctcagccgacacctgtgaccccactgctgcc tgtcaaactggagtggatggacaaccaaaatgtgtgtgtgctgatcatcagattggcgac ggacggcgttgctatggtaacctgatggagcggctgattgagcttgacagaagtgggagt caaagaggaactctgacaggagccatcgccttgttcgaaaaaggctgttcaatgcagctg agtcacgatggacccttcacagctttcatcccactgctgaaaacacctctgactggcgtt aacgaggagctggtgtgtcaaaaccacctgatcgagggtcagcgcctctacaaggagctg gagggacgagacttcaacatgttaggaggagccaagatgaggaacaaagacaacaagaag ttcatcctgatggacaaccccagcaaactgtacaccatcatccaggaagacctgccagca gccaacgggatcatacacatcatcgaccagccaatgaccaacactctctctgaccggtcc cttcgtgatgaacagtttgctgataagacaatcggagagattctgacaaaggatgacaaa tacaaccgcttcctgtctctggttgataactgcgggtcaccaccacccttgcggggtctg ggacctctgactgtgttcgtcccttcaaacgacgctgtggacaaatccagagacggcagc atcttgtacatgctgaattcagccaaatataaactgcaggaacttctcaggcaccatgtt ttctccagggccgggctgacagttgccgagttggctactctccctcagattcgtacgatg gccaatcagattgtcaccatcactgtgtccgaagacggtgcgatccttctcggggagaag ggcatccgtctgtcgagcaccaacatcatggcgtccaacggaatcatccatttgattgat gggcttctcttcccgccatccatcctccccatcttgcctcaccgctgtgatgtcacagag agcaagatcactgtgggtccatgtgttcactgcagttacctctttgagactgactgtcca gaaggcaccactgaattggactctcatcagaccggctgtacttacacagtgtctcgcctc aacacccaactcagttcaggatgtgccaaattctgcaacgccaccaacacggtagcacag tgttgtaaaggtttttatggtccggactgtaaaccctgtatccgaggattcgagcaccct tgctatgacaaaggaacgtgctttgacggtatccaaggcaacgggtcgtgcagctgtcag tcaggcttcaagggtgtcgcctgccacatctgtgcagatccatccaagcacggagagaaa tgtgacgaagagtgtcactgtgtccacggtgtgtgtgataaccgtccaggcagcgctggt gtgtgtcagagaggatcctgtctagagggatattcaggtgaacactgtgacaggacggcc acaccctgcaactctgacggccagcaggaacactgccatattcacgcatactgcacacac acgggactggagaacaagtgttggtgtcgggatggatatgatggtgacggtcactcctgt tctcccatcaacccctgcctgcagagcagccgaggaggctgcgacaccaatgcaaagtgt gagtatgcaggtccaggtaatgcgtcatgtgtgtgtgctgagggttggacaggtgacggc agagtgtgcgtggagatcaacaactgtcagctgaagcgtcgaggaggctgcagccccaac gccgattgcaaccacatcggacctggacagagtgagtgtgtttgtaaaactggttacatg gggaacggcatcgagtgtgacctcattaacccgtgcctcgagaaaaacggaggctgccat gatttggcaaagtgtgagctctctacggggggaacacacacctgtacctgtcctgacgga ttcgctggagatggaaccctctgctacgggacgttactggacgagctggaaatgaaccca ttgctgatgcatttcatacaactgaggcacggggacctcactgaggacctgagtgggaac ctcacactgttgattccggtcagaggagctatggttaacatgactacagctttctggacc agtcgacaccacctgcctctcttcatacggagccacatcctacttgggatttactctcta gaggatctggaaaaaagggttggcagcaggcttcccaccatgaatccccccacctactgg gagatcagcaacagcaccggggtgattcgcattggaaatgcctccatccgcacgcccaac ttgcctgcaatcaatggctacatccacatcatagaccatattctggctcccagtctctca gaccttccccccgagccgcccaccctgatggcattcctgaactcctcctcaaacttcact ctattcagacagtacgctctgatgtacaatctgtcacaaaagctgcatagttgttgccag cagttcaccctcctgctgcccacagacgatgccatcaggcagcacctcagcgcgactaac tcctcgctcatggaatctgatgtgtttcagtaccatgtggttttccatgacctgctcttc cctcaccatctgtctgacggtatattaaaaagtaccatgctgggagacgaataccaggtc cagttccacttagacaagaacaaccagacagttgtgaacgatgttcctcttgatggaacg ttcactgagacgcagtttggcctcatcctagtcctccctcaggtcctcaaagtcagtcgc aacagatgcagcaagcaggtctacattcagatccgtggacggtgcacagactgtgaagga ccacctcaatgccctctcttcaaaaaaccaatcaaagagcagtttcctgtcaacatgcga cccaactgtaattacaggaagcgattcggatccaggaggaagtcagtgcgaggctgtgtc atcaaatgtattcgggaaagcaagcatctctcctgttgccccggttactacggccacgag tgcttcaaatgcccgggagatgttggcagcaggtgctacaatcacggggagtgtcaggac ggtaaccttggcaacggggagtgccgttgcttcgagggtttccacggcaccgcgtgcgag gactgtgagccaggacgatacggagtcaactgctcctccaaatgtgtgtgtgaccatggg aagtgtgaggacggtctggcaggaagtggaaggtgtgtgtgttatnaaggttggaaagga gcttcctgctctgcagagatcaaggatgatgcctgcggaggagtgtgtgacgagaatgcc aactgtataacaggaccacagggtacggctgctgcctgtgtgtgtgtggctggatatgaa ggcaatggaacttactgcaaagagctggaattgtgcagcaggtctaacggtggttgttca gagtttgccagttgcaagaaggcctctgcaggagagaggacttgttcctgtaaagagggt ttcaccggagacggggtcatctgcctggagattgacggctgtctggtcaacaatggaggc tgccacaagtcagcagagtgcaccagaacaggacccaacattacggcctgtaactgcaag atgggctttcaaggacccgggaagttctgttaccctgtcaacccctgcaataataacaat ggcggctgcagtaggtatgctcgctgtgagtatttcggtcagggtcagaggaactgctcc tgcctcagaagccacgttggcgatggcttcgactgccggggaaccacaaacactgagctg tcccgacaatcagaaaacgtcttcttccgccgaatgttatcatcatcaggtgttcgtggt ctttatggtgatggaccattcactgtcttcgcccccgcagtggaaaccaaccatgactcc tctgttttgaggaatggaaaccagtttggtcgacttcctgacctggttcgttaccatgtc gtttcctgtgagactttgaccttgagtgacctcaaaaccactaagctagccgtctccaca tcgggatacacacttcacttcagcctgcaggagggttcagtgtgggtgaacaacagatcg aagatcataaagagtgactacaccacatcgaatggagtcattcaccacatcgacaccatg ttgacgccctacaagctgcaggacaaacccaggatccagtataccaagatgaacctcacc acagctgcagcgttttatggctacagacgcttttacaaacttgtggaggatgcggggtta ctccctgtgctcgagatgtccgtccaccagccgtacaccatgttctggcccacagatgat gccctgaactcactgtcagctgaaagacagcactggctctccagccccgaacaccaagac caagtggctgccctggtgaaggctcacatcatccgcaactccagggtgatgggtgtggct cagcctgatttattgtctgcgtttcgcaccatgcacggatccactatcaagtacaactgt gacaagaccctggtgggggcagtgtggattaatgggaatgcagccagggtagtggagcgc tacctgaacttcaaagagggcttggcctacggcattgaccagctactggaaccaccgggt ctgggagcgctctgcgacagcctgaacaacagaaccacctttgggcgctgtggacgctgc ctcttccctccaacctgcccattcaactaccccgacacgggaaaaagggagcgttgtaca aacatgagaacctcaaggtttcgaccccaaccttggtttaccctggacgatcctttcagt cgcatgggctgtaagagagtatgtcaggtttcttcgtgggtcccaaagtgctgcaaaaac cactacagccgagactgtcaagtttgtccaggtggcctggaggctccttgtggtaaccat ggtgactgcgacgatggtatgagtggttcaggaagatgcaagtgccatgaaggtttcatt ggaaaagcatgcgaactgtgtaccgtcggccactatggccccaactgcacagcctgcagc tgtgggcagcagggacgctgtgatacaggcattcagggttctggacagtgtgtctgtaag cccggctggaagggtgaacactgcgagatcgatataggctccatcccagaagagtgcctg cagtgccccgcgcaggccgactgtgtgccaggtgttggttgtcagtgtaaacccgggttt caggggaacggcaccttctgcgatccagagccacctcctgacctgtgcgctgagtacaac ggaggctgccaccagaacgccgactgtaaccagaccgggctgatagttaactgcacctgc accagcggttaccagggagacggctactcatgtgagcccatcaacagatgtattgaagag aacggaggctgcagtgactttgcctcctgcaagttcactggtccaaacgagcgtcagtgc gagtgcctgccgggctacgtgggtaacggagtccagtgtctggagaaggtggtgtcccct gttgaccgctgcctgaaagacaacggagactgcgaccccgtggccacctgcaaggacctg cattaccatgcgaacacagccggagtgttccacctgcgctctccagatgggaagtacaag atgaacttcagtcaggccgacgccgcatgcagggccgagggagccgtgctggccagcttc aaacagctgggagacgcacagcagctggggatgcatctgtgcgtggccggctggatggag ggggggaaggtgggatacccgacccgcttcccctcggtcaagtgtggagacaaccacgtg ggcctggttatttataaagaacctgtggaccagagcagcatgtacgatgcctactgcttc aggctcaaaggtgtttcgtgtgtgtgttctgccgattacattggaaacggagacttctgt aatggcgtcctgaccagcgtccttgcatcctacagcaacttctctatcttttacaagttg ttgttggactatagcggctcgtctacggagggcaaacagctcgttgactttatgtctcac aggaagtctgaggtcacgctgtttgttcctcataatgccggctttgccccaaaccagact ctgtctggtagagatcttgagtatcacatctcagccaatcacagcagacgaccatttaag gatctgaagcaccaagaagtcattgtatccagactagggttcaatctgaatgttacctat ggaaaaaatgagagctttaagctggtgaacaagcggctgctggtggggtgggacattcct gctgtaaatgggatcatccacatcatcgagtccccactgacagcgccccctgcacctata tccgatcgtgcttcttcccaaggccacacccactcgagtggcactgtgtcggccatcttg gtgtcattgttgctgctgtgtgtgttggctggacttggttattacgtcttcaaacacaag acggacgctttccgcttccactatttcagaaacgaggatgaggacggtgctgcaggcggc aggatgaagccagcactggtctccatcgcaaacccactgtacagcggctccagagctttc agcgagccattcggggacgccggaccgtctgagccagcacaacctgatgagcctccacag attttggacctgtcctcataa

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