Trematomus bernacchii (emerald rockcod): 117489626
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Entry
117489626 CDS
T09643
Symbol
col2a1b
Name
(RefSeq) LOW QUALITY PROTEIN: collagen, type II, alpha 1b
KO
K19719
collagen type II alpha
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04510
Focal adhesion
tben04512
ECM-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
117489626 (col2a1b)
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
117489626 (col2a1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00536 Glycosaminoglycan binding proteins [BR:
tben00536
]
117489626 (col2a1b)
Glycosaminoglycan binding proteins [BR:
tben00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
117489626 (col2a1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
COLFI
VWC
Motif
Other DBs
NCBI-GeneID:
117489626
NCBI-ProteinID:
XP_033994977
LinkDB
All DBs
Position
Unknown
AA seq
1490 aa
AA seq
DB search
MFRIMDSRTVLLLVATQACLLAVVRCQEEDQEDVLSCLQDGQRYSDKDVWKPEPCRICVC
DTGTVLCDEIVCEDLKDCPKPEIPFGECCPICAPDHSPPIGSPGAKGQKGEPGDITDVVG
PRGPGGPMGPSGEQGKRGSRGDNGEKGTPGPRGRDGEPGTPGNPGPPGPAGPNGPPGLGG
NFAAQMAGGFDEKSGGAQMGVMQGPMGPMGPRGPPGPSGSPGPQGFQGNPGEAGEPGQSG
PLGPRGPSGPSGKPGDDGEAGKPGKSGERGPSGPQGSRGFPGTPGLPGIKGHRGYPGLDG
SKGETGAVGSKGESGSSGENGAPGPMGPRGLPGERGRPGPSGVAGTRGNDGLSGPAGPPG
PVGPSGAPGFPGSPGTKGEAGPTGARGPEGAQGPRGESGTPGSSGPSGASGNPGTDGIPG
SKGSAGAPGISGAPGFPGPRGPPGPQGATGPLGPKGTSGDPGIPGFKGEAGPKGEFGPVG
NQGPHGPQGEEGKRGPRGEAGSAGPLGPPGERGSPGNRGFPGQDGLAGPKGAPGERGPAG
ASGAKGAGGDPGRPGESGLPGARGLTGRPGDAGPQGKVGPSGGSGEDGRPGPPGPQGARG
QPGVMGFPGPKGATGEPGKSGEKGLGGAPGLRGLPGKDGETGAAGPPGPAGSAGERGEQG
QPGPSGFQGLPGPPGPPGEGGKPGDQGVPGEAGAAGATGPRGERGFPGERGAAGPQGLQG
PRGLPGTPGTDGPKGAIGPAGAGGAQGPPGLQGMPGERGSAGIPGPKGDRGDLGEKGPEG
ASGKDGGRGLTGPIGPPGPSGPNGEKESGPAGPSGAPGTRGAPVKVYRGEDGPPGPAGFA
GPGSDGQPGIKGEMGESGQKGDAGAPGPQGPSGAPGPSGPTGVFGPKGARGAQGPSGATG
FPGAAGRVGPPGPNGNPGAAGPAGPAGKDGPKGVRGDGGPPGRQGDAGLRGPAGTSGEKG
DAGEDGPPGPHGPSGPQGLGGSRGIVGLPGQRGERGFPGLPGPSGEPGKQGAAGGSGDRG
PPGPVGPPGLTGPSGEPGREGNSGSDGPPGRDGATGMKGERGTTGPAGASGAPGATGATG
PVGPTGKQGDRGESGAQGPAGSSGPAGARGMPGPQGPRGDKGESGENGERGQKGHRGFTG
LQGLPGPPGQNGDQGATGVNGPSGQRGPPGPVGPSGKDGGNGMPGPIGPPGPRGRGGETG
PSGPAGNTGPPGLPGPPGPGIDMSAFAGLGQTEKSPDPLRYMRADQASGSLRTHDAEVDA
TLKSLNNQIENIRSPEGSRKNPARTCRDLKLCHPDWKSGEYWIDPNQGCTIDAIKVFCNM
ETGESCVKSKPDSIPRKNWWSSKSKDRKHVWFGETMNGGFHFSYGDDSLAVNTAAIQMTF
LRLLSTEASQSLTYHCKNSVAYMDASTGNLKKALLLQGSNDVEIRAEGNSRFTYSVMEDG
CTKHTGQWGKTVIEYRSQKTSRLPIVDIAPMDIGGSDQEFGVEVGAVCFL
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atgttcagaataatggattccaggactgtactgctactcgtagccactcaagcctgtcta
ttagccgttgtaagatgtcaagaagaggaccaggaggatgttttaagctgtttacaagat
ggacagcgctatagtgacaaggacgtatggaaaccagagccttgtcgcatctgtgtgtgt
gacactggaaccgtcctgtgtgatgaaattgtctgcgaggatcttaaagactgccccaaa
cctgaaatcccattcggagagtgttgccccatctgtgcacctgaccattctccacccatt
ggatcaccaggagccaagggtcagaaaggtgaacctggagacattacagatgttgtagga
ccaagaggaccaggtggcccaatgggcccatcaggagagcaaggaaaacgaggatcaaga
ggagataacggggagaagggaacccctggtccccgcggcagagatggtgaacctggcacc
cccggaaaccccggaccccctggacctgcagggcctaatggaccccctggacttggtgga
aactttgctgctcagatggcaggtggatttgacgagaagtctggcggtgctcagatgggt
gtgatgcaaggaccaatgggccccatgggacccagaggaccacctggccccagcggatca
cctggcccacaaggtttccaaggcaacccaggagaggctggagagcccggacagtctggc
cccctgggtccccgtggcccctccggaccttctggaaaacccggagatgatggtgaggct
ggcaaacctggcaaatcaggtgaacgtggaccttctggacctcagggatctcgtggattc
ccaggaactcctggcctgcctggcatcaagggacacagaggttatccaggtcttgatggt
tctaagggagaaactggagctgttgggtctaagggagagtctggttcttctggagagaat
ggcgctcccggaccaatgggaccacgtggtctgcctggtgagagaggccgtcctggaccc
agtggagttgctggtacacgtggaaatgatggcttgtccggtcctgctggccccccagga
cccgtcggcccctctggagctccaggcttccctggctctcctggtacaaagggagaagct
ggtcctactggtgctcgtggacctgagggtgctcagggaccccgtggagagtctggcact
cctggatcatccggaccatctggcgcttctggaaaccctggaactgatggtatccctgga
tccaaaggatcagctggtgctcctggtatctctggtgctcctggtttccctggacctcgt
ggaccccccgggcctcagggagcaactggacctctcggacccaaaggaacatctggagac
cccggtattccaggcttcaagggagaggctggacccaaaggagaatttggacccgttggt
aatcagggacctcacggcccacaaggagaagaaggcaagcgaggacccaggggtgaggca
ggttctgctggaccacttggacctcctggagagagaggatctcccggtaaccgcggtttc
cccggtcaggatggtctggctggtcccaagggagcccctggtgagcgtggacccgctgga
gcgagtggagccaagggagccggcggtgaccccggccgccccggagagtctggtctcccc
ggtgccagaggtctgactggacgccctggtgacgctggtcctcaaggcaaagttggacct
tccggaggttctggtgaggacggtcgccccggaccccccggcccacagggagcccgcgga
cagcctggagtcatgggattccccggacccaagggagcaactggcgagcctggcaagtct
ggagagaaaggactgggtggagctcctggtctgagaggtctgcctggcaaagatggagaa
actggtgctgctggaccccccggcccagctggctctgctggcgagagaggagagcaagga
cagcccggaccctcaggtttccagggtcttcccggacctcctggcccccctggtgaggga
ggcaagcccggagaccagggtgttcctggagaggctggagctgctggtgctactggaccc
agaggagagcgtggtttccccggagagagaggagctgccggcccccagggtctgcagggg
cctcgcggtctgcctggaactcctggaactgacggacccaagggagccattggacctgct
ggtgctggtggagctcagggcccccccggcctgcagggtatgcccggagagagaggatct
gccggcattcctggacccaaaggagacagaggtgaccttggagagaaaggacctgaaggt
gcttccggtaaagatggtggaagaggtctcactggtcccattggtcctcctggtccttct
ggccccaacggagagaaggaatctggtcccgctggtccttctggagctcctggtacccgt
ggtgctcctgttaaggtgtacaggggtgaggatggacctcctgggcctgctggatttgcc
ggacccggctctgacggtcagcctggtatcaagggagagatgggagaatctggacagaag
ggtgacgctggagcccccggaccccaaggaccctctggtgccccaggaccttcaggtcct
accggtgtttttggacctaaaggtgctcgtggtgctcagggaccttctggtgccactggt
ttccctggagctgctggccgagttggaccccctggtcccaacggtaaccctggagctgct
ggacccgccggccctgctggtaaagacggacccaagggagtgagaggagacggtggacct
ccaggccgacagggagacgctgggctccgcggccctgctgggacttctggagagaaggga
gatgctggagaggacggtccccctggtcctcatggtccttcaggtcctcagggtctgggc
ggatcacgcggtatcgtgggtctgcccggacagcgtggagagagagggttccccggcctg
cctggaccttctggtgagcctggaaagcagggagctgctggtggcagcggagaccgcgga
ccccctggacctgtgggaccccctggcctcactggaccttcaggagagcctggcagagag
ggcaactctggatctgatggacctcctggtagagacggtgctactggaatgaagggtgaa
cgtggtaccactggtcctgctggagcttcaggtgctccgggcgctactggtgccactggc
ccagtcggccccaccggcaaacagggagaccgcggagagtctggtgcacaaggacctgct
ggctcttcaggacctgctggagcccgaggaatgccaggacctcaaggaccccgtggtgac
aagggtgagtctggagagaacggtgagcgaggacagaagggacaccgaggtttcactggt
ctgcagggtctgcccggacctccgggtcaaaatggagaccagggagcgactggagttaat
ggaccttctggacaaagaggaccacctggacctgttggaccaagtggaaaggatggtgga
aacggtatgccaggacccatcggaccccctggacctcgtggtcgcggtggagagaccggc
ccctctggtcccgctggtaacaccggaccccccggtcttcctggcccccccggccctggc
atcgacatgtctgctttcgctggtctgggccagactgaaaagtcccccgatcctctcagg
tacatgagggccgaccaggcttccggaagcctccgtacgcacgatgccgaggtcgacgcc
actcttaaatctctcaacaaccagatcgagaacattcgcagccccgagggatccaggaag
aacccggcccgcacctgcagagacctgaagctctgccaccccgactggaagagcggcgag
tactggatcgatcccaatcagggatgcaccatcgacgccatcaaggtgttctgcaacatg
gagaccggagagtcctgcgtcaagtccaagcccgacagcatcccacgcaagaactggtgg
tccagcaagagcaaggaccgcaaacacgtctggttcggagagaccatgaatggaggattc
cacttcagctacggtgatgacagccttgcagtcaacactgctgccattcagatgaccttc
ctgagactgctgtccaccgaggcgtctcagagcctcacctaccactgtaagaacagcgtg
gcctacatggacgcctccacaggcaacctgaagaaggctttgctgctgcagggctccaac
gacgtggagatcagagccgagggcaacagccgcttcacttacagcgtgatggaggacggc
tgcacgaaacacacaggacagtggggcaagacagtgatcgagtacagatcgcagaagacc
tctcgtctgcccattgtagacattgcccccatggatattggaggatcagaccaggagttt
ggagtggaagtcggtgcagtctgcttcttgtaa
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