Trematomus bernacchii (emerald rockcod): 117489733
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Entry
117489733 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: voltage-dependent L-type calcium channel subunit alpha-1D-like
KO
K04851
voltage-dependent calcium channel L type alpha-1D
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04010
MAPK signaling pathway
tben04020
Calcium signaling pathway
tben04218
Cellular senescence
tben04260
Cardiac muscle contraction
tben04261
Adrenergic signaling in cardiomyocytes
tben04270
Vascular smooth muscle contraction
tben04530
Tight junction
tben04912
GnRH signaling pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
117489733
04020 Calcium signaling pathway
117489733
09140 Cellular Processes
09143 Cell growth and death
04218 Cellular senescence
117489733
09144 Cellular community - eukaryotes
04530 Tight junction
117489733
09150 Organismal Systems
09152 Endocrine system
04912 GnRH signaling pathway
117489733
09153 Circulatory system
04260 Cardiac muscle contraction
117489733
04261 Adrenergic signaling in cardiomyocytes
117489733
04270 Vascular smooth muscle contraction
117489733
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117489733
Ion channels [BR:
tben04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
117489733
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ion_trans
Ca_chan_IQ
GPHH
CAC1F_C
PKD_channel
FAM176
Motif
Other DBs
NCBI-GeneID:
117489733
NCBI-ProteinID:
XP_033995149
LinkDB
All DBs
Position
Unknown
AA seq
1549 aa
AA seq
DB search
MWLTQVQDVANKVLLALFTCEMLTKMYSLGLQCYFVSLFNRFDCFVVCGGITETILVELA
IMSPLGISVFRCVRLLRIFKVTRHWQSLSNLVASLLNSMKSIASLLLLLFLFIIIFSLLG
MQVFGGKFNFDETQTKRSTFDNFPQALLTVFQILTGEDWNAVMYDGIMAYGGPSSSGMIV
CFYFIILFICGNYILLNVFLAIAVDNLADAESLNTDEPKKGDKKEDEKEEKEEEEEIEDT
AAEEEDPEVPSGPRPVISELVKKEKITPIPEGSAFFIFSTTNPFRVFAXQLINHHIFTNL
ILGFIMLSSVSLAAEDPIRNSSARNQVLGYADYVFTSMFTFEIVLKMTTYGAFLHKGAFC
RNYFNLLDLLVVGVSLVSFGLQSSAISVVKILRVLRVLRPLRAINRAKGLKHVVQCVFVA
IKTIGNIMIVTTLLQFMFACIGVQLFKGKFYRCTDEGKSNSEECKGTYILYKDGDVNQPS
IXRRMWHNSEFNFDNVLMAMMALFTVSTIEGWPSLLYKAIDSNRENLGPIYNYTTTRVEI
SIFFIIYIIIIAFFMMNIFVXFVIVTFQEQGEKEYKNCELDKNQRQCVEYALKARPLRRY
IPKNPYQYKFWYVVNSTGFEYIMFVLIMLNTLCLAVQHYGQSALFNYVMDILNMVFTAVF
TVEMVLKLIAFKPRHYFADAWNTFDALIVVGSVVDIAITEVNNTEDSARISITFFRLFRV
MRLVKLLSRGEGIRTLLWTFIKSFQALPYVALLIAMLFFIYAVIGMQVFGKVAMVDGTHI
NRNNNFQTFPQAVLLLFRCATGEAWQEIMLACIAGKLCDPESDYGPGEEMTCGSGFAIIY
FISFYMLCAFLIINLFVAVIMDNFDYLTRDWSILGPHHLDEFKRIWSEYDPEAKGRIKHL
DVVTLLRRIQPPLGFGKLCPHRVACKRLVAMNMPLNSDGTVMFNATLFALVRTALKIKTE
GNLEQSNEELRAVIKKIWKRTSMKLLDQVVPPAGDDEVTVGKFYATFLIQDYFRKFKKRK
EEGLVGAHPTQNNTAIALQAGLRTLHDIGPEIRRAISCDLQDDELVDFIPEEDEEIYRRN
GGLFGNHLMNGGHRRSNGHQTNATQRPLQVQPPPHYAHMDQPVGRLSRANAMSHPNQHHH
HHHHHNRHHNSYGKSPKSTNINLNNANVSSLPNGGHHRYYEHAPPNGYPGLRSSYYDYEK
PRTPQGQRRRYYETYVRSHGVDGHHPTIRREEEFEEDRLSGEYYSGEEFYEDDSMLSGER
YPNSDTEYETPKGYHHPDSYYDDDEQLLYRDSRRSPKRRLLPATPQGHRRPSFNFECLRR
QGSQDELPHQRTALPLHLMQQQVMAVAGLDSSRAHRLSPTRSTRSWATPPATPGSKDQSP
YYTPLIRVDQKHRGSVASSQVSVRKSSWYTDDPEFSQRMYSPVHLQVPPEFHNQYHQKRG
SATSLVEAVLISEGLGRYAKDPKFVAATKHEIADACEMTIDEMESAASHLLNGGMAPSAN
GVNVFPILTPRDYDLQDTAASYSDEEPETEPRAPYEEDLADEMICITTL
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atgtggctgacacaagtgcaggatgtggccaacaaggtgctgctagccctgttcacatgt
gaaatgttgacgaagatgtacagtcttgggctacagtgctactttgtgtccttgttcaac
cgctttgactgcttcgtggtgtgtggaggaatcactgaaaccatcctggtggagctggca
atcatgtctcctctcggtatctctgtgttccgctgcgtccgcctgctgagaatcttcaag
gtcacacgtcactggcagtctctaagtaacttggtggcgtctctgctcaactccatgaag
tccatcgcttccctgctgctgctgctcttcctcttcatcatcatcttctcgctgctaggc
atgcaggtctttggtggaaagttcaactttgacgagacccagaccaagaggagtacattc
gacaactttccccaagccctcctcacagtgtttcagatcctgaccggagaagactggaac
gctgtgatgtacgatggcatcatggcgtacggaggcccttcctcttctgggatgattgtg
tgcttttacttcatcatcctcttcatctgcggaaactatatcctgctgaacgtcttcttg
gctatcgctgtggacaacttggcagacgcagagtctctcaacacagacgaacccaagaaa
ggggacaaaaaggaggacgaaaaagaggaaaaggaggaagaggaggagattgaggacact
gcagcggaggaggaggatccagaggtgccatcagggcctcggccggtcatctctgaactg
gtaaagaaggagaagatcacccctatcccagagggaagtgccttcttcatcttcagcacc
accaacccgtttcgggtgtttgccnnacaactcatcaaccaccacatattcaccaacctc
atcctggggttcatcatgctcagctccgtctctcttgctgctgaggatcccatccgaaac
tcctcagctcgcaatcaagtcctaggctatgcagattatgtcttcactagtatgtttaca
tttgagatcgtattgaagatgacaacatatggagcctttctccataaaggggcattctgt
agaaattacttcaacctcctcgacctgttggtggtgggggtttcccttgtctcctttggc
cttcagtcctcggccatctcagtggtgaagattcttagggtccttcgtgttcttcgaccc
ctgagggccatcaatcgggccaaaggcctaaagcacgtggtgcagtgtgtgtttgtggcc
atcaagactatcggaaacatcatgatcgtcaccactctgctccagttcatgttcgcctgt
ataggggtgcagctatttaagggaaagttctatcgctgcacggatgaaggaaagtccaac
tcagaagagtgcaagggcacgtacatcctgtataaggatggagatgtgaaccagccgtcc
atcnacagacgaatgtggcacaacagcgaattcaactttgataacgtcctcatggctatg
atggctctgttcactgtgtccaccattgaaggctggccttctttgctctacaaggcaatc
gactccaacagggagaacctgggacccatttacaactacactaccacccgcgtggagatt
tccatcttcttcattatctacatcatcatcattgctttcttcatgatgaacatctttgta
nggtttgtgattgtcacatttcaggaacaaggagagaaagagtacaaaaactgtgaactc
gataaaaatcagcgtcagtgtgtggagtacgctctgaaggcccgtccactgaggaggtac
atccctaagaacccgtaccagtacaagttctggtacgtggtgaactccaccgggtttgag
tacatcatgtttgtgctcattatgctcaacacgctctgcctggctgtacagcactacggc
cagtcagcgctctttaactacgtaatggacattctcaatatggtcttcactgctgtcttc
actgtggaaatggttctcaaactcatcgctttcaagcccaggcactatttcgctgatgct
tggaacacattcgatgccttaattgttgtcggtagtgtcgtcgatattgctatcactgaa
gttaataacacggaggacagcgctcgcatctcaatcaccttctttcgactgtttcgagtc
atgcgactggtcaagctcctcagcagaggggaaggcattcgcaccctcctttggactttt
atcaaatccttccaggcgctgccctatgttgctcttctgatagccatgctgttcttcatc
tatgctgtcattggcatgcaggtgtttggaaaggttgccatggtggacggcacacacatc
aacagaaacaacaacttccagactttccctcaggctgtgctcctcctcttcagatgtgcc
actggagaggcgtggcaggagatcatgttggcctgtatagcagggaaactgtgtgaccca
gagtccgactacggccccggggaggagatgacgtgtggcagtggatttgcaataatttac
ttcatcagcttctacatgctttgcgccttcttgattatcaacttgtttgtggccgtcatc
atggacaactttgactatctgacacgtgattggtccattcttggtccacaccacctcgat
gaattcaaaagaatttggtcagagtacgaccccgaggccaagggcagaattaagcatctg
gatgttgtgacacttcttcgtcgcatccagcctcctctcggcttcggcaagctgtgccct
cacagagtcgcttgcaagaggctggtagctatgaacatgcctctaaacagtgacggcacg
gtcatgtttaacgccactttgtttgcactggtgcgcactgccctgaagatcaaaacagaa
ggtaatctagagcagtccaacgaagagctgcgagctgtcatcaagaaaatctggaagaga
accagcatgaagctcctggatcaagttgtgccccctgctggtgatgatgaggtaaccgtg
gggaagttctatgccaccttcctgatacaggactactttaggaaattcaagaaacgtaaa
gaagaaggcctggtgggtgctcacccgacgcagaacaacacagctatcgctctacaggct
ggccttcgcaccctgcatgatatcgggcccgaaattcgccgagcgatatcatgtgatctg
caggatgacgagctagtagactttattccagaggaagacgaggaaatttataggcgtaac
ggcggactcttcggtaaccatctcatgaacggtggtcatcggcgatccaacggccaccag
accaacgccacgcagagacctctgcaggtgcagcctccgccccactacgcccacatggac
cagccggtgggacgcctatctcgagccaacgcaatgtcccaccccaaccaacatcaccac
caccaccaccatcacaaccgccaccacaactcctacggcaaatctccaaaatccaccaac
atcaacctcaacaacgccaacgtgtccagcctgcctaacggaggacaccatcggtactat
gagcatgcaccgcccaacggctacccaggtctccgcagctcctactacgactacgagaag
ccccggaccccccagggtcaaagaaggcgctactatgagacctatgttaggtcgcatgga
gtcgatggacaccaccccaccatccgcagggaggaggagtttgaagaagaccggctctcc
ggggagtattacagcggggaggagttctatgaagacgatagtatgctttcaggagagagg
tatcccaacagtgacaccgagtatgagactcccaaaggttaccatcaccctgacagttac
tatgacgatgacgagcagctgctttaccgcgactcacggaggtcaccaaagagacggtta
ctgcctgccacgcctcaaggtcacaggaggccatccttcaactttgagtgtctgcgcaga
caaggtagccaggacgagcttccacaccagcgcactgctctgccactgcacctcatgcag
caacaggtcatggccgtagcaggcctggactccagcagagcccaccgcctctccccaacc
cgctccacccgctcctgggccacgccccccgccactccgggcagtaaggaccagtcgcca
tactacacccctctcatccgagtggaccagaaacacagggggagcgtcgccagcagccaa
gtgtctgtgcgcaagagctcctggtacacggacgacccggagttctcccagaggatgtac
tcccccgtccacctgcaggtgccgccggagttccacaaccagtaccaccagaagagaggc
agcgccaccagcctcgtggaagcggttttgatatcagaagggcttgggagatatgccaag
gatcccaagttcgtcgctgccacaaagcacgagattgcagatgcgtgtgagatgacgata
gatgagatggagagtgcggccagccacctgctgaacggagggatggccccgagcgccaac
ggggtcaacgtgttccccatcctgactccaagggactatgacctgcaggacactgcagcc
agctacagcgacgaggagccagagacagaacctagagctccttatgaggaggacctggca
gacgagatgatctgcatcacgactttatag
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