Trematomus bernacchii (emerald rockcod): 117489821
Help
Entry
117489821 CDS
T09643
Symbol
smarcc2
Name
(RefSeq) SWI/SNF complex subunit SMARCC2 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117489821 (smarcc2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117489821 (smarcc2)
03036 Chromosome and associated proteins [BR:
tben03036
]
117489821 (smarcc2)
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117489821 (smarcc2)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
117489821 (smarcc2)
PBAF complex
117489821 (smarcc2)
GBAF(ncBAF) complex
117489821 (smarcc2)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_1
SWIRM
SWIRM-assoc_3
Myb_DNA-binding
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
117489821
NCBI-ProteinID:
XP_033995248
LinkDB
All DBs
Position
Unknown
AA seq
1053 aa
AA seq
DB search
MAVRKKDGGPNVKYFEASDTVSQFDNVRVWLGKNYKKYIQAEPPTNKSLSSLVVQLLQFQ
EEVFGRHVSNPPLTKLPMKCFLDFKSGGSLCHILAAAYKFKSDQGWRRFDFQNPSRMDRN
VEMFMTIEKSLVQNNCLSRPVIYLSSDIEPKLLGKLKDIIKRHQGSVTEEKASSSHVVVP
IPTSLEEEEWIRPVMKRDKQVLLHWGYFPDGYDTWIPSSEIEATVEDPPSPEKPRKVHAK
WILDLDQYNEWMNEEDYEVGEGCPKRKRISAKTLTDEVTTPDERRDKKPGSAKKRKRSPS
PSPTPPPQESKKKNTKKGPTTPYTKSKRGQREEEQEDPSKDLDEASPVPASEEGNTPKTN
NTKKDSDSTPVKGGADLDEQEDESMETTGKEEEEGSPSVKGEPVKGSDLHEDNVTEQTHH
IIIPSYAAWFDYNSVHAIERRALPEFFNGKNKSKTPEIYLAYRNFMIDTYRLNPQEYLTS
TACRRNLAGDVCAIMRVHAFLEQWGLINYQVDSESRPTPMGPPPTSHFHVLADTPSSLVP
LQPKTSQTPATQQMISFPDKVKEKPADLQNFGLRTDMYSKKTGPVKSKSTASSMREWTEQ
ETLLLLEGLEMFKDDWNKVSEHVGSRTQDECILHFLRLPIEDPYLEENSSSLGPLAFQPV
PFSQAGNPVMSSVAFLASVVDPRVASAAAKSALEEFSRMKEEVPAALVEAHVRRVEEAAR
VSGRQDPLYGLEGSGIAGTGLEEGERPDENSDENKSDNQPSEEKREAKENKDGGTEEEEK
QPENGKKEEERGREQEGEREADKTEVEMGDGEKEKDGKEGTEEGQREAESEGERKAKVER
DVGEGNLATAAASALAAAAVKAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELET
IMDREREALEYQRQQLLADRQSFHMEQLKYAEMRARQQHFQQIQHQQHQAGGPHANQAAP
APTPPSQGPTAGQSAPSTPAPQPPPSPAPPASASAPAPESQPPQSAHTSPSCPPGGTPAA
NSSSSSSITPLHEAAAPLSGETLHPSAPVPPPQ
NT seq
3162 nt
NT seq
+upstream
nt +downstream
nt
atggcggtgcggaagaaagacggcggcccaaatgtaaaatatttcgaagcgtctgatacc
gtttctcagtttgataatgtccgcgtctggctgggaaagaattacaaaaagtacatccag
gccgagccccccaccaacaagtctctgtccagcttggtggtccagctgctccagttccag
gaggaggtgttcggtcgccatgtcagcaaccctccgctcaccaagctgccaatgaagtgt
tttctggactttaagtcaggaggatctctctgccacatcctggccgctgcctacaagttc
aagagtgaccaaggatggcgcaggtttgacttccagaatccatcgaggatggaccgaaat
gttgagatgttcatgaccatcgagaagtccttagtgcagaacaactgcctgagcagacca
gtcatctacctgagctctgacatagagcccaagctgctcgggaaactgaaagacatcatc
aaaagacatcagggctcagtgaccgaggagaaggcctccagctcccatgttgtggttcct
attcccaccagcctggaggaagaggaatggattcgtcccgtgatgaagagagataagcaa
gtgctgctccactggggatattttcctgacggttatgatacctggatcccatccagtgag
attgaggctacagtggaggatcctcccagcccagaaaagcccagaaaggtccatgcaaag
tggattttagacttagaccagtataacgagtggatgaacgaggaagactatgaagtgggc
gaaggctgcccgaagaggaagaggatctccgccaagaccctgacagatgaggtgaccacg
ccagacgagcgaagggacaagaaaccaggcagcgccaagaagaggaagaggtcgccgtcc
ccctcccccacccccccgcctcaggagagcaagaagaagaataccaaaaaagggccaacg
accccgtacaccaagtctaaacggggccaaagggaggaggagcaggaagaccccagcaaa
gacctggatgaagcctcacccgttccagcatctgaagagggaaacacacctaaaacaaat
aacactaagaaagactcggattcaactccagtcaagggtggagcagatttggacgagcaa
gaggatgagtccatggaaacaacaggaaaggaggaggaggaaggctctccaagcgtgaag
ggtgaaccagtgaaaggctcggacctccacgaggacaacgtgaccgagcagactcatcac
atcatcatacccagctacgctgcctggttcgactacaacagtgttcatgccattgagcgc
agagccctgccagagttctttaatgggaagaacaaatccaaaactccggagatttacctg
gcgtacaggaacttcatgattgacacctacagactgaaccctcaggagtacctgacgtcc
accgcctgccgcaggaacctggccggagacgtctgtgccatcatgagagttcatgccttc
ttggagcagtggggcctcatcaactaccaggtggactctgagagcagacccacacccatg
ggccccccacccacctctcacttccacgtcctggcagacactccgtccagtctggttccc
ctgcagcccaaaacgtcccagaccccagccacccagcagatgatctccttccctgataaa
gtgaaggagaaaccagcagatctgcagaactttgggctgaggactgacatgtacagcaag
aagacgggccctgtgaagagcaagagtacagcgagctctatgagggagtggacagaacaa
gaaacacttctactacttgaggggttggagatgttcaaggacgactggaacaaggtttca
gaacacgtgggcagccgtacgcaggatgagtgcatccttcacttcctgcggctgcccatc
gaagacccttacctggaggaaaactcctcgtccctggggccgctcgccttccagccggtt
cctttcagccaggcaggaaacccggtgatgagctcagtcgccttcctcgcctcggtcgtc
gacccccgcgtcgcctcggctgcagccaagtctgctctggaggagttttctcgtatgaag
gaggaggttcccgcggcgctcgtggaggctcatgtccgacgggtggaggaggcagcgagg
gtcagcgggcgacaagaccctctgtacggcctggaggggagcggcatcgcaggcaccggc
ctggaggagggggagagacctgatgaaaacagtgatgaaaacaagagtgacaaccagcca
agtgaagaaaagagggaggccaaggagaacaaagatggagggactgaggaagaggagaag
cagccggagaatgggaagaaggaagaagaaagagggagagaacaagagggagagagggag
gcggacaaaacagaggtggagatgggcgatggggagaaggagaaggacggaaaggagggc
acagaggaagggcagagagaggcggagagcgaaggagagaggaaggctaaagtggagcga
gatgtgggagaggggaacctggccaccgccgctgcgtctgccctcgctgctgctgctgtc
aaagccaagcacctggctgcggtggaggagaggaagatcaaatctctcgtggcgctgctg
gtggagacccaaatgaagaagctggagattaaactgcgacacttcgaagaactggaaacc
atcatggacagagagagggaggctttggagtaccagcgtcagcagctgctggctgaccgg
cagtccttccacatggagcagctgaagtacgcggagatgagggcccgccagcagcacttc
cagcagatccagcaccagcagcaccaggcgggggggcctcatgccaaccaggcggccccg
gcccccaccccaccgagccagggtcccaccgcaggtcagtcggctcccagcacaccagcg
ccgcagccgccccccagccccgcccctccagcctcagcttctgccccggcccctgagtcc
cagccccctcagagtgctcacacctcgccctcctgcccccccggcgggacccccgctgcc
aactccagctccagctccagcattactccactccatgaggccgccgcccctctttccggg
gaaaccctccacccctcggctcccgtcccgcctccacagtga
DBGET
integrated database retrieval system
