Trematomus bernacchii (emerald rockcod): 117489904
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Entry
117489904 CDS
T09643
Name
(RefSeq) protein polybromo-1-like isoform X1
KO
K11757
protein polybromo-1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117489904
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tben03021
]
117489904
03036 Chromosome and associated proteins [BR:
tben03036
]
117489904
Transcription machinery [BR:
tben03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
117489904
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
PBAF complex
117489904
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Bromodomain
BAH
HMG_box
HMG_box_2
HMG_WDHD1
Motif
Other DBs
NCBI-GeneID:
117489904
NCBI-ProteinID:
XP_033995363
LinkDB
All DBs
Position
Unknown
AA seq
1634 aa
AA seq
DB search
MALKRRRATSPSSSVSGGDFDDNQSSSLASSIGRKRRRTSNIPTVDPIAVCHELYNTIRD
YKDDQGRMLCELFIRAPKRRNQPDYYHVVSQPIDMMKIQQKLKMEEYDDVEQLTSDFQLL
FNNAKTYYKSDSPEYRAACKLWDLYLRTKNEFVQRGEYDDDDEDGYDAQDNPGGSTEDEN
APTCLKEVLEQLLDAVVSHTEPTGRLVSELFQKLPSKMQYPDYYAIIKEPIDLKIVAQKI
QLNHYRSVSAMAKDIDLLVKNAKTYNEPGSQVFKDANTIKKMFSQKKSEMEHGEPIKSSI
RIRNRRSAQGDRLSAITMALEYESDEEGILSGSVHYDEGESEAESMTSNMDMSNPIFQLY
EAVRGARNSQGQLISEPFLQLPSRKDYPDYYHQINQPICLHLIKNKMKSNEYESVEHIDS
DLMRMFENAKRYNVPHSSIYKRALKLQHIQQMKRKELLQRDDDDGDSMLSSATSDTSSTK
RKRFALLPNQISEVCGGISTVDPQFVSSHKKNMKKNRMKTLFASVAEAREASTGRRLCDL
FMVKPSKKDYPDYYKVILEPMDLRTIEHNIRSDKYMTEDAMVEEMKLMFRNARHYNEEGS
RVYNDADVLEKIMKDRRKDLGPATDDDDMMSPKLKIRKNSITLKKSKYLTPLQQKLNELY
EAVKNFTDKRGRRLSTIFLRLPSRAELPDYYIAIKKPVDMEKIKSHMLANKYQDVDALVE
DLVLMFNNACTYNEPESLIYRDALMLHRVLLETRRDLEGGDDDHVPDVPRLIQELVRSLF
VSVLGHQDDEGRCYSDSLAEIPAVDPANPEKPPLNFEIIRTNVDRGRYKRLDVFQDHMFE
VLEKARRLNRTDSEIFEDAVELQQFFIRIRDELCKNGEILMSPALSYTSKHLHSDVEKEK
KEKLPKEFEEDKIKREEEKREAEKREDSVGGSWQSNLQRTYSQDCSFKDSMYHVGDYVYV
EPAEPNLQPHIIYIERLWQDDTGEKWLYGCWFYRPNETFHLATRKFLQKEVFKSDYYNKA
PVSKILGKCVVMFVKEYFKLHPEGFRADDVYVCESRYSAKSKSFKKIKMWTMPPSSVRFV
PREVPLPVVRVASVFAPKQEEKPPEVVDEIKMTDGIVDKEREDVPMDMTNGEPGCQYYEQ
LCYNNLLLKVGDCVYIGSHGLVRHRVGRIEKMWMRDGAGYFFGPIFIHPEETEHEPTKMF
YKKEVFLSNLEETCPMTCVIGKCVVSSFKDYLSCRPTEVPEENVLLCESRYIESEKQMKK
FKGLKRFSLSGKVVEDEIYYFRKLIVPQKEPSPLLDKKIEKLEAKFADMTDEELEDLGDD
DGELGDRSHSRRHSSMSSDMDTMPYTPPQSTPKSVKGLPKKEGSKRKINMSGYILFSSEM
RAVIKARNPDFSFGELSRLVGTEWRNLEGSRKADYEERAAKLAEQQERDRAHHQTSPRAE
GMMGAYRSAMMQGYGEGMVSMTGMPPHHMGVPVFPQHLLPVMPGFPGMPYFGVNGPGGVH
GAGNIQGSQMGSIGQGQQAPPPYPGQGQMGQPAHQQPSTPMFVSPPAKSQRLLHSEAYLR
YIEGLTAESSTISKWDHALSVQKQDVRLTKEQESRLPSHWLKSKGAHKTMADALWRLRDL
MLRDTLNIRQTHNL
NT seq
4905 nt
NT seq
+upstream
nt +downstream
nt
atggccttgaaaaggagaagggcaacatccccgtctagcagtgtgagtggaggagatttt
gacgataaccagtcttcatctctagcgtcttcaattgggagaaagaggagaaggacctca
aacattcctactgtggatcctattgctgtctgtcatgaactgtacaacaccatcagagat
tacaaggatgatcagggtaggatgttgtgtgagcttttcatcagagcaccaaaacgaagg
aatcaaccggactattatcatgtggtgtctcagcctattgacatgatgaagatccagcag
aaattaaagatggaggagtatgatgatgttgaacaactcactagtgactttcaactgttg
ttcaacaatgcaaaaacatactacaagtcggacagtcctgagtacagagcagcctgtaaa
ctttgggacctttacctgagaaccaagaacgagtttgttcagcgaggcgaatatgatgat
gatgatgaagatgggtacgatgcacaagacaaccccggagggtccactgaggatgagaat
gcacccacctgcttgaaagaagtcctcgagcagctccttgatgccgtggtgtctcacact
gagcccacaggccgcctggtcagcgagctgtttcagaagctaccctccaaaatgcaatac
ccagattattatgccatcattaaggaaccaatagatctgaaaattgtggctcagaagatc
cagttgaatcactacaggagcgttagtgccatggctaaagatatagatttgctggtcaag
aatgccaaaacgtataatgagcctggatcgcaagtgtttaaggatgcaaacaccatcaaa
aagatgttctcacaaaagaagtctgagatggagcatggagagccaatcaagtccagcatt
cgtatcaggaatagaaggtctgcccagggtgaccgcctctcagcgatcaccatggctctt
gagtatgaaagtgatgaggaaggcattctctccgggtccgtccactatgatgagggtgaa
tctgaagcagagagtatgacctctaacatggacatgagtaatcccatcttccagctgtat
gaggcggtgcgaggggccaggaacagccagggccagctgatctctgagccgttcctgcag
ctgccctccaggaaggactaccccgactactaccaccagatcaaccagcccatctgcctc
catctgatcaagaacaagatgaagagcaacgaatatgagagtgtggagcatatcgactct
gatctgatgcggatgtttgagaatgccaaacgctacaatgttcctcactcctccatctac
aagcgtgcactcaaactccaacacattcagcagatgaagagaaaagagctcttacagaga
gatgatgatgatggagacagcatgctctcctctgcaacgtctgacaccagcagcacaaaa
agaaaaaggtttgcacttttacctaatcaaatctctgaagtgtgtggaggtatatcgaca
gttgatccgcaatttgtttccagtcacaagaagaatatgaagaaaaaccgaatgaaaact
ctttttgcctccgtggccgaggcgcgagaagctagcactggtcggagactttgtgacctc
ttcatggtcaagccctcgaagaaggactatcccgactactacaaagtcatcctggagcca
atggacctcaggaccattgagcacaacatccgctcagacaagtacatgactgaagatgca
atggtggaagagatgaagctgatgttccgcaatgctcgacactacaatgaagaaggctct
cgggtctacaacgatgctgacgtcctagagaagattatgaaagacagacgcaaggatctt
gggccagcaacagatgatgatgacatgatgtctccaaagttgaaaataagaaagaacagc
attactctgaagaagtccaagtacttaacacccttgcagcagaagctgaatgagctctat
gaggctgtcaagaacttcacagataagcggggccgtcgcctcagcacaatattcctgcgg
ctgccgtctcgggctgagctgcctgactactacatcgctatcaagaaacctgtcgacatg
gagaagatcaagagccacatgttggctaacaagtaccaggatgtggatgcactggtggag
gacttggtgctcatgttcaacaatgcctgtacttacaacgagcccgagtctctgatttac
cgcgacgccctcatgctgcacagagtgctgctggagaccaggcgggacctggaggggggg
gatgacgaccatgtgccggatgtaccacgcctcattcaggaacttgtccgcagcctcttt
gtttccgtgctcggtcaccaagatgacgagggccgttgctacagcgattcactcgcggag
atacctgccgtagatcccgcaaatcctgagaagccaccactgaactttgagattatcagg
actaatgtagatcgagggcgttataagaggctggatgtgtttcaggaccacatgtttgaa
gtgctggaaaaggccagacggttgaataggaccgattccgagatcttcgaagacgctgtg
gagctgcagcagttcttcatccggatcagagacgagctgtgtaagaacggagagatcttg
atgtctcctgccctcagctacacctccaaacatctgcatagtgatgtggagaaggaaaag
aaagagaagctccccaaggagtttgaggaggacaaaatcaagagggaagaggaaaaaagg
gaagctgagaagagagaggactcagttggaggatcatggcagtctaacctgcagcgcaca
tacagtcaggactgcagcttcaaagacagcatgtaccacgtgggagactatgtgtatgtg
gagcctgcagagcctaacctccagcctcacatcatctacattgaacgcctttggcaagac
gacactggtgagaagtggctttatggctgctggttctacagaccaaacgaaacatttcat
ctggccacaaggaagttcttgcagaaggaagtttttaaaagtgactattacaacaaagct
cctgtcagtaagattctgggcaaatgtgtggtcatgtttgtaaaggagtacttcaaactt
catccagaaggcttcagagctgacgatgtttatgtctgtgagtcgcgctactctgccaag
tccaagtccttcaagaagatcaagatgtggaccatgcccccaagctcagtgcggtttgtt
cccagagaggtccccctacctgtcgtccgtgtggcctccgtgtttgctcccaaacaagag
gagaaacctcccgaggtggtggatgaaatcaaaatgacagacggtattgtagacaaggag
agggaggatgttcccatggatatgaccaatggggagccggggtgtcaatactacgagcag
ctctgctacaacaacctgttgctgaaagtaggagactgtgtttacattggttcacatgga
ctagtgcgccaccgagtgggcaggattgagaaaatgtggatgcgagacggagcaggctac
ttctttggtccaatcttcattcatccagaggaaacggagcacgagccaacgaaaatgttc
tacaagaaggaagtgttccttagcaaccttgaggagacttgccctatgacctgcgtcatc
gggaagtgtgtggtgtcgtccttcaaagactatctctcctgccggccaactgaagtgcct
gaagagaacgtgctgctctgtgagagccgctacatcgagagtgagaagcagatgaagaag
ttcaagggccttaagcgcttctcactctctgggaaagtggtggaggatgaaatctactat
tttaggaagctcatagtgccccagaaggagccctcccctctgctggacaaaaaaattgag
aaactggaggccaagtttgctgatatgacagatgaggagctagaggatcttggggatgat
gatggcgagctaggggaccggtcacactctcggaggcactcttccatgtctagtgacatg
gataccatgccttacactcctccgcagtccacaccaaaatccgtaaagggccttccaaag
aaggagggctccaagcggaagatcaacatgagtggctacatcctgttcagcagtgagatg
cgggcggtcatcaaagcccggaacccagacttctccttcggggagctcagccgcctcgtc
ggcacagagtggaggaacctcgagggttccaggaaagcagattatgaagagcgagcagct
aaattggcagagcagcaggagcgggacagggcccatcatcagacgtcgcctagagcagaa
ggtatgatgggtgcatataggtcagctatgatgcagggatacggtgaaggcatggttagt
atgactggcatgccaccacatcacatgggggtgcctgtctttccccaacatctcctgccc
gttatgcctgggtttcctggaatgccgtactttggtgtcaacggcccgggaggtgttcat
ggagcaggaaacattcaaggatctcagatgggttcgattggccaagggcagcaggctccc
ccaccgtacccaggacaaggccagatgggacagcctgcgcaccagcagccctccaccccc
atgttcgtgtccccaccagccaaatctcagcggctgctccactctgaggcatacctcaga
tacatcgagggcctgactgcagagtcctctaccatcagcaagtgggaccacgctctttca
gttcaaaaacaagatgtgcgcctcactaaagagcaggagagcagactgccatcccactgg
ctgaagagtaagggggcccacaagacaatggcagatgcactttggcgactccgtgacctg
atgctgcgagacaccttaaacatacgccagacgcacaacctgtag
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integrated database retrieval system
