Trematomus bernacchii (emerald rockcod): 117489937
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Entry
117489937 CDS
T09643
Symbol
chd5
Name
(RefSeq) chromodomain-helicase-DNA-binding protein 5
KO
K14435
chromodomain-helicase-DNA-binding protein 5 [EC:5.6.2.-]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117489937 (chd5)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
117489937 (chd5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
CHDCT2
CHDII_SANT-like
Helicase_C
CHDNT
PHD
DUF1087
Chromo
PHD-1st_NSD
ResIII
HDA2-3
PHDvar_NSD
HTH_Hrp3
PHD_2
DEAD
AAA_22
Motif
Other DBs
NCBI-GeneID:
117489937
NCBI-ProteinID:
XP_033995416
LinkDB
All DBs
Position
Unknown
AA seq
1997 aa
AA seq
DB search
MPGSLSNEDEGQDDMDFEDDMPDDDDEGERNTVPLTPLDSFFSDSDSLKQQKKQKPKKMK
EGKMPKVKKRKKEGGIQPRVDSDLEETSEVEEERERPEIGSESESSAYGPTKKKKKKPKE
KKEKKPRKKMRDEEDEDDDDDDGNMKEPKSSSQLMEEWGLEDVQYGFTEEDYTTITNYKA
FSQFLRPLIAKKNPKIPMSKMMTVLGAKWREFSANNPFKGASATAVAAAVAAAVETVTVA
QPTSVSSSQPSAQPGPIKKAKTKEGKGPGVRKRSKSVKDVKKKAKPRKTKSKSGQSVKKK
KASSSEEDFLEESDFDDISIHSASVLSDTSGAATKKKSRRGRKKRKKEDGDGYETDHQDY
CEVCQQGGEIILCDTCPRAYHLVCLDPELEKAPEGKWSCPHCEKEGIQWEAKDEEEEEEE
PVGEEEDDHLEFCRVCKDGGELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCMCPPLK
GKVQKILHWTWGEPPLPAEPPEGPDGTPGDPLINPPLKGRAEREFYVKWAGLSYWHCSWV
SELQLELYHAVMYRNYQRKNDMDEPPPFDYGSGEEELNNEKRRSKDPQYAAMEGRFYRYG
IKPEWLVMHRIVNHSFDKDGDVHYLIKWRDLPYDQCTWEGDDFDVPEYEIHKASYWDHRE
QILGEDQRPLVVRKVKKLKEDHQKREVPPDAPIIDPTIKFEQQPWYINATGGTLHPYQLE
GLNWLRFSWAQGTDTILADEMGLGKTVQTIVFLYSLYKEGHSKGPFLVSAPLSTIINWER
EFEMWAPDFYVLTYTGDKDSRAIIRENEFTFEDSAVKTGRKVFRMKKDTPIKFHVLLTSY
ELITIDQAILGSITWACLVVDEAHRLKNNQSKFFRILNGYKIYYKLLLTGTPLQNNLEEL
FHLLNFLTPIRFNNLEGFLEEFADISKEDQIKKLHDLLGPHMLRRLKADVFKDMPSKTEL
IVRVELSPMQKKYYKFILTRNFEALNSKSGGNQVSLLNIMMDLKKCCNHPYLFPVAAVEA
PVSPNGSYDGNQLVKSSGKVTLLQKMLRKLKDEGHRVLIFSQMTKMLDLLEDFLEFEGYK
YERIDGGVTGGLRQEAIDRFNAPGAQQFCFLLSTRAGGLGINLASADTVIIYDSDWNPHN
DIQAFSRAHRIGQNRKVMIYRFVTRGSVEERITQVAKRKMMLTHLVVRPGLGSKTGSMSK
QELDDILKFGTEELFKDEIEAARAMGDNKDCEEGNVIHYDDDAISKLLDRSRDATEDPEI
QNTNEYLSSFKVAQYVVKEEEGEEEVEREIIKQEENVDPDFWEKLLRHHYEQQQEDLARN
LGKGKRIRKQVNYNDTTQEDQDNQSEYSVGSEDEDEDFEERPEGGRRHSRRQMKNEKDKP
LPPLLARVGGSIEVLGFNARQRKAFLNAIMRWGMPPQDAFNSHWLVRDLRGKSEREFRAY
VSLFMRHLCEPGADGAETFADGVPREGLSRQHVLTRIGVMSLVRKKVQEFEHVNGKLSSP
DLIPIGMELKKLTESLSSDPNTPVPASPVATQPGTPIPPEKPESLLSAAEDKDTTEQDGK
KVSEQESSSAEAASAPEKAADSEESKASSEEKTGDERDRTESPSAKTEPSANSKESASKQ
PELSASQTSPRIEPSKEPEKSSEKGDTDSPSAKTEDKESKPAVADDMKSEDALEGRLNGD
KDTLDEMDDSRKEDKNGYKVKFMFNIADGGFTELHTLWQTEERAALSSGKMHDIWHRRHD
YWLLAGIVTHGYARWQDIQNDPRYAILNEPFKTEIHKGNYLEMKNKFLARRFKLLEQALV
IEEQLRRAAYLNMTQDPSHSAMALNTRFAEVECLAESHQHLSKESLAGNKPANAVLHKVL
NQLEELLSDMKADVTRLPNMLSRIPPVSGRLQMSERSILSRLTSRGSEPPPQQPFSQGGF
GCSQMYSSSFGGGFRGPGAQAMVNFSQMPLGPYVSVSSNGPPPPTSHLDKKSLDSLRDVA
TPDLKSGKPSDVICIED
NT seq
5994 nt
NT seq
+upstream
nt +downstream
nt
atgccggggtcgctgagtaatgaagacgagggacaagacgacatggattttgaagacgat
atgccagatgatgatgacgaaggtgagcgcaacaccgttcccctcacacccctcgacagc
ttcttctccgacagcgactcccttaaacaacaaaagaagcagaagcccaaaaagatgaaa
gagggcaaaatgcccaaagtaaagaagaggaaaaaggagggtgggatccagcccagagtg
gacagcgacctggaggagacctcggaggtggaggaggagcgggaacgtccagaaatcggc
tctgagagcgagagcagcgcgtacgggccgaccaagaagaagaagaagaagcccaaggag
aagaaagagaagaagcccaggaagaagatgagggatgaggaagatgaggacgatgacgat
gatgatgggaacatgaaagaacccaaatcctccagccagctgatggaggagtggggtctg
gaagacgtgcagtatggcttcaccgaggaagactatacaaccatcaccaactacaaggcc
ttcagccagttcctcaggcctctcattgccaagaagaacccgaagattcccatgtcgaag
atgatgacagtgttaggggccaagtggcgcgagttcagcgccaacaacccgttcaaagga
gcatctgccaccgctgtggccgccgctgtggctgccgccgtggaaacggttaccgtggca
cagccgacgtctgtcagcagcagccagccgagcgctcagccggggcccatcaaaaaagcc
aaaaccaaagagggaaagggacccggagtgaggaagaggagcaagtctgtgaaggacgtg
aagaagaaagccaagcccagaaagaccaaatcaaagtcgggccaaagtgtgaagaagaag
aaagcgtcctcgagtgaggaggacttcctggaggagtccgactttgatgacatcagcatc
cacagtgcctcggtgctttctgatacctcgggggccgccaccaagaagaaatcccgacgt
gggcggaaaaaaaggaaaaaggaagatggggacggctatgagacggaccatcaggactac
tgtgaggtttgccagcaggggggggagatcatcctgtgtgacacctgcccccgagcgtac
cacctggtgtgtctggacccggagctggagaaggcccccgagggcaagtggagctgtcca
cactgtgagaaagaggggatccagtgggaggccaaagacgaggaggaggaagaggaggag
cccgtaggggaggaagaggacgaccacctggagttctgcagagtgtgtaaagatggggga
gagctgctgtgctgtgacacctgcccatcgtcctaccacatccactgcctcaaccccccc
ctgcccgagatacccaacggggagtggctgtgtccacgctgcatgtgccctcccctgaaa
ggtaaggtccagaagattctgcactggacgtggggagagcccccgctgccagcagagccg
cctgagggccctgacggcacgccaggtgatccgctgatcaaccctccgctcaagggccgc
gcagagcgggagttctacgtgaagtgggccggcctctcatactggcactgctcctgggtc
agcgagctgcagttggagctgtatcacgcggtcatgtatcggaactaccagcgtaagaac
gacatggacgaacctccgccatttgactacggctcgggtgaggaggagctcaacaacgag
aagaggaggagcaaagacccccaatacgctgcgatggaggggcgcttctaccgctacggc
attaaaccagagtggctggtgatgcaccggatagtaaaccacagtttcgataaggacgga
gatgtgcattacctgatcaagtggagagacctgccctacgaccagtgcacctgggagggg
gatgactttgacgtcccggaatatgaaattcacaaagcttcttactgggaccacagggag
caaatactcggggaggaccaacgccccctggtggtgaggaaagtaaagaaactcaaagag
gaccatcaaaagagggaggtccctcctgacgctcccatcatagatccaaccatcaagttt
gagcagcagccgtggtacattaacgccacggggggcacgctgcacccctaccagctggag
ggtctgaactggctgcggttctcctgggctcagggcaccgacaccatcctggctgatgag
atggggctggggaagacggtgcagaccatagtgttcctctactcactctataaggagggt
cactcgaaggggcccttcctggtgagtgcgcccctctccaccatcatcaactgggagagg
gagtttgagatgtgggctccggacttctacgtgttgacctacaccggagacaaagacagc
cgggcgatcatcagggagaacgagttcaccttcgaggacagcgccgtgaagaccggacgc
aaggtgttccgcatgaagaaagacactcccatcaagttccacgtgctgctgacctcttac
gagctgatcaccatcgatcaggccatcctgggctccatcacctgggcctgcctggtggtg
gacgaggcccaccgactgaagaacaaccaatcaaagtttttcagaatcctcaacgggtat
aagatctactacaagctgctgctcactgggactcctcttcagaacaacctggaggagctg
ttccacctgcttaacttcctcacccctatacgcttcaataacctggaaggcttcctggag
gagtttgctgatatctctaaggaggaccagatcaagaagctccacgacctgctgggccct
cacatgctcagacggctgaaagcggatgtcttcaaggacatgccttcaaagacagagctg
atcgtccgggtggagctcagccccatgcagaagaaatactacaagttcattttgacacga
aatttcgaggctctgaactccaaaagtggagggaaccaagtgtcgctgctcaacattatg
atggacctgaagaagtgctgcaaccatccctacctgttcccagtggctgctgtggaagct
cctgtgtcacccaacggctcgtatgatggcaaccaactggtgaagtcctcaggaaaagtg
acgctgcttcagaaaatgctgaggaaactcaaagacgaaggacacagagttctcattttc
tctcagatgacaaagatgttggatctgcttgaggacttcctggagttcgagggttataaa
tatgaacgtattgatggaggagttacaggaggcctgaggcaggaggccattgaccgcttc
aatgcccccggcgctcagcagttctgcttcctgctttcaactcgagctggaggtcttggc
atcaacctcgcgagtgctgacaccgtcatcatctacgactcggactggaaccctcacaat
gacatccaagctttcagcagggctcatcgtataggccaaaacaggaaggtgatgatctat
cgctttgtgacgcgcggctcggtggaggagcggatcactcaggtggcgaagaggaagatg
atgctgacccacctggtggtgaggcccggcctgggctccaaaactggatccatgtccaaa
caggaactggacgatatcctcaagttcggcaccgaggagcttttcaaagatgaaatagaa
gcagcacgagccatgggtgacaacaaagattgtgaggagggcaatgtgattcactacgat
gatgacgccatctccaaactgttggaccgcagtcgggacgccaccgaagacccagagatt
cagaacacgaacgagtacctgagctccttcaaggtggctcagtatgtggtgaaagaagag
gaaggagaggaggaggtggagcgggagattatcaagcaggaggagaacgtggatccggac
ttctgggagaaactcctccgtcaccactacgagcagcagcaggaggacctggcccgcaac
ctggggaaaggcaaacgcatccggaagcaggtcaactacaacgacaccacccaggaggac
caagacaatcagtcggagtactccgtggggtccgaggacgaggacgaagatttcgaggag
aggcctgaaggaggacgcagacactctcgtcggcagatgaagaatgagaaggacaaacct
ctgcctcccttactggcacgggttgggggcagtattgaggtgctggggttcaacgcccgg
cagaggaaagccttcctgaatgccatcatgcgttggggcatgccccctcaggacgccttc
aactcccattggctggttcgagacctgagagggaagagcgagcgtgagttcagggcctat
gtgtctctgttcatgagacatctgtgtgagccgggggcagacggagcagagacgttcgct
gacggagtcccacgcgagggactgtctcgtcagcacgttctcaccaggatcggagtcatg
tccctcgtcaggaagaaggtgcaagagtttgagcatgtaaatgggaagctgagttctccg
gacctgattcccatcggcatggagctgaagaaactgacggagagtttgtcttcagatccc
aacacgcctgttcctgccagccctgtggccacgcagccgggcacccccatcccaccagag
aagcctgagtctctcttgagtgctgctgaagacaaggacaccacagagcaagatggcaag
aaagtttcagaacaggaatcttccagtgccgaggcagcgtctgcacctgagaaggcggct
gacagcgaggagagcaaggccagctcagaggagaaaacaggagatgagagggacagaacc
gagtcgccctctgcgaagaccgagccatctgccaactccaaggagtctgcttccaaacag
ccagagctatcagccagtcaaacctcgcctagaattgagcccagcaaggaaccagaaaag
tcctcagaaaaaggagatactgattctccttccgcaaaaactgaagacaaagaaagtaag
ccagctgtggcagacgatatgaagagtgaagatgcattagagggtcgattaaatggagat
aaagacacgttggacgagatggatgacagcaggaaggaggacaaaaatggatacaaagtc
aagttcatgttcaatatcgctgatggaggttttacagagctgcacaccctctggcagact
gaggagcgagcggcgctgtcttcaggaaagatgcatgacatctggcaccgtcgccatgac
tactggctcttagccggcatcgtaacacacggctacgctcgttggcaggacatccagaat
gacccgcgttatgctattctgaacgagcccttcaaaactgagattcataagggcaactac
ctcgagatgaagaacaagttcctcgcacgccgctttaagctgttggagcaggctctggtg
atcgaggagcagctgaggcgggcagcgtacctgaacatgacccaggaccccagccactcc
gccatggccctcaacacccgcttcgctgaggtggagtgtctggctgagtcccaccagcac
ctgtccaaagagtccctggccgggaacaagcctgccaacgccgtgctgcacaaagtgctg
aaccagctggaggagcttctgagtgacatgaaggctgatgtaacccggctgcccaacatg
ctgtcccgcatcccgccggtgtcgggccgcctccagatgtctgagcggagcatcctgagc
cgcctcaccagccggggcagcgagccccccccacagcagcctttcagccagggggggttc
ggctgctcccagatgtacagcagcagctttggggggggcttcagaggaccgggggctcag
gccatggtcaacttcagccagatgcctctgggaccctacgtcagcgtgtcctctaatggc
cctccgccccctacaagccatctggataagaagtcacttgactccttgagagacgtggcc
acgcctgacctcaaatcaggcaaaccgagtgatgtcatctgcatagaggactag
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integrated database retrieval system
