Trematomus bernacchii (emerald rockcod): 117489941
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Entry
117489941 CDS
T09643
Symbol
stau1
Name
(RefSeq) double-stranded RNA-binding protein Staufen homolog 1 isoform X1
KO
K17597
double-stranded RNA-binding protein Staufen
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
tben01009
]
117489941 (stau1)
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tben03019
]
117489941 (stau1)
Protein phosphatases and associated proteins [BR:
tben01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
117489941 (stau1)
Messenger RNA biogenesis [BR:
tben03019
]
Eukaryotic type
mRNA surveillance and transport factors
Factors involved in mRNA localization
Trans-acting binding proteins
117489941 (stau1)
mRNA cycle factors
Stress granule specific factors
117489941 (stau1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
dsrm
Staufen_C
Dicer_dsRBD
Motif
Other DBs
NCBI-GeneID:
117489941
NCBI-ProteinID:
XP_033995419
LinkDB
All DBs
Position
Unknown
AA seq
689 aa
AA seq
DB search
MSQLQFQCPTSPIPAASAPLQLGQPQPGYSIHCAAGTLPSESAGQPMRSSALPAGSVTPY
NNNTVSNMANPKEKTPMCLVNELARFNKIQPEYKLLCEQGPAHSKIFSVRLTLGDQHWEA
EGTSIKKAQHSAAESALAETTLPKPTMRTPRNTADGMTHTMELNALCMKLGKKPMYKPVD
PYPGMRPPNFNYNVRAPGPYQRPMQQYYYPFPPVGPMLYHMELSIGGQQFIGKGRTRQLA
KHEAAAKALKVLHKEPILQELPEMNGEPEEENLNKSEISQVFEIALKRNLPVNFEVLKED
GPPHMKSFIVRVAVGEFAGEGEGKSKKIAKKLAAASVLGELKRLPHIPSVEKTLPRIKKK
TKSIIKLQTSPEYGQGMNPISRLAQIQQAKKEKEPEYSMVTERGLPRRREFVMQVTVCGQ
TAEGMGPSKKVAKRNAAEKMLELLGYKVPQPQPPKPALKTDEKTPVKKPGDGRKVTFFEP
GSAEERTLMTKDQEFRLPYLNHQQLPAGILPMVPEVAQAVGICQVSQDYSRAAPNPGMAT
ITAIIANELLYAGTSPTAETILQNKNNLNQLPHGPLTRPSEQLGFLSSVQNLQVEYKDFP
KNNKNEFVSLINCSSYPPLISHGIGKDVESCHDMAALNILKLLSELDQQSNERTGNGPIS
RCGKQEMEGDLHLKQANSSTLTQTLDGTV
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atgtcccagctccagtttcagtgtcccacaagtcccatccctgctgcctctgcccccctg
cagctggggcagcctcagcccggctacagcatccactgtgctgccggcactctgccctcg
gagagcgcaggccagccaatgaggagctccgctctccctgccggctcagtcaccccctac
aataacaacacagtatctaacatggcaaaccctaaagagaagacccccatgtgtttggtg
aatgagttagcccgtttcaataagattcaacctgagtataagctgctgtgtgagcaaggg
ccagctcactctaagattttctcagtgaggctcacactgggagatcagcactgggaggca
gaggggaccagcatcaagaaagcccagcactcggctgctgaatctgccctcgctgagaca
acacttcccaaacctaccatgaggacgccccgcaacacagcagatggcatgacacatacc
atggagttaaatgcactatgtatgaagcttggtaaaaagcctatgtataaacctgttgac
ccgtatcctgggatgagacctccaaacttcaattacaacgtccgggctccaggaccttac
cagcgccctatgcaacagtattattacccatttcctccagtgggaccaatgctataccac
atggagctttccatcggaggccagcagtttattggaaagggacgcacgcggcagttggcc
aaacatgaggctgctgccaaggccctgaaagttttacacaaagagccaatactgcaagag
ttaccagagatgaatggagagcctgaggaggagaacctcaacaaatcagaaatcagccaa
gtgtttgaaattgcacttaaacgcaacttacctgtcaactttgaggttttaaaagaagac
ggccccccccatatgaagagttttatagtgcgcgttgcagtcggggagttcgctggagag
ggtgaaggaaagagtaaaaaaattgccaagaagttggcagcagcatcggtgctgggggag
ttgaaaaggctaccacatatacccagtgtggaaaagacgctgccacgcatcaaaaagaaa
accaaatccatcatcaagctgcagaccagcccagaatatggccagggaatgaatcccatc
agccgcctggctcagatccagcaggccaagaaggagaaggagccggagtacagcatggtg
acggagagaggtctgcctcggcgccgggagttcgtcatgcaggtgacggtgtgcggtcag
actgcagagggaatggggcccagtaaaaaagtggccaagaggaacgcagcagagaaaatg
ctggagctcttgggatataaagtgcctcagcctcagccccctaaaccggctctgaaaact
gatgagaagaccccagtgaaaaaaccaggtgatgggcgcaaagtgaccttcttcgaacct
ggctctgcagaggagaggacattgatgaccaaggaccaggaattccgcctgccttacctg
aaccaccagcagcttcctgccggtatccttcccatggtccctgaagtggctcaggcagtc
ggaatctgccaagtgtcccaggactacagtcgagcagcacccaaccccggcatggccacc
atcactgctattattgccaacgagctgctctacgcagggacttcaccgactgctgagact
atcctacagaacaagaacaatctgaaccaactgccccacggacccctcaccaggccttca
gagcagctcggcttcctttcatcggtgcagaacctgcaggtggagtacaaagatttcccc
aaaaacaacaagaacgagtttgtgtcgctgattaactgctcctcctatcctccgctcatc
agtcatgggattgggaaagatgtagaatcctgtcatgatatggctgcattgaatatatta
aagttgctctcggagttggaccagcagtcaaatgaaaggacaggaaatggaccaatctct
cggtgtggcaagcaggagatggaaggtgacttgcacctgaaacaggctaactcaagcaca
ttgacacagactctggacggcactgtttag
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