Trematomus bernacchii (emerald rockcod): 117490175
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Entry
117490175 CDS
T09643
Name
(RefSeq) LOW QUALITY PROTEIN: replication protein A 70 kDa DNA-binding subunit-like
KO
K07466
replication factor A1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03030
DNA replication
tben03420
Nucleotide excision repair
tben03430
Mismatch repair
tben03440
Homologous recombination
tben03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
117490175
03420 Nucleotide excision repair
117490175
03430 Mismatch repair
117490175
03440 Homologous recombination
117490175
03460 Fanconi anemia pathway
117490175
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
tben03000
]
117490175
03032 DNA replication proteins [BR:
tben03032
]
117490175
03400 DNA repair and recombination proteins [BR:
tben03400
]
117490175
Transcription factors [BR:
tben03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
117490175
DNA replication proteins [BR:
tben03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
117490175
DNA repair and recombination proteins [BR:
tben03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
117490175
MMR (mismatch excision repair)
117490175
DSBR (double strand breaks repair)
HR (homologous recombination)
117490175
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
Extensin_1
DUF223
Motif
Other DBs
NCBI-GeneID:
117490175
NCBI-ProteinID:
XP_033995680
LinkDB
All DBs
Position
Unknown
AA seq
683 aa
AA seq
DB search
MSVTLTKGAVEALIKGSEVNNAVLQILNIRQVSTGSPPRYRLRMSDGQHTWSSFLLATQL
NNLTEDNLVPNSVFLVKKSVNNTLTDGRSVVILLDMEMLQSAEETGGKIGDPTPYETVVK
TSSSQESVSSTSVPASPPSAAERGPSKWNKSNRSPPRGQGKWFCGKVPPMTASPMNASPM
KASPMKASPMEASPMKASPMKASPMKASPMKASPMEASTSKFSPMKASPMKLPLRSLHPQ
RFVQHFSRFSSTKVIPIAGLNPYQSKWTIRVRVTNKSSVRTWSNSRGDGRLFSFEVLDES
GEIKVTAFNKEVDQFFSLVEQGKVYYITKATLKVANKQFTTLKNNYEMTLNAHSSVVPCD
DSQGIPTVNCDFVPIAELENSDTDIIVDVIGVCKSADDVSRITTKTSREVSKRALQLIDT
TGKVVTLTLWGEEAEKFDGSVNPVVAVKGARLTDFGGRSVSALFSSTVMVNPDLPEAFSL
RAWYDQGGYALDSQSLTETRSAGSGTKTNWKMLSEVKNEHLGHGEKADYFSCLATVLYTR
KENCLYQACPTEDCKKKVIDQQNGLYRCEKCSREFPNFKYRLILNANLADFGDNQWVTCF
QETAETLLGHSAETLGQLRDTDENAFDEVFQKANFTTHIFRNRVKLETYNDESRVKVTVM
EVQPVDHREFSRRLLSNIRRLSS
NT seq
2052 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtaacactcacaaagggggcagttgaagccctgataaaaggctcagaggtaaac
aatgccgtgctgcagatacttaacatccgccaggtctctactggctctccacccaggtac
cggctaaggatgagtgatggtcagcacacttggtcttccttcctactggctacacagtta
aacaatctgacagaagacaacctggtacctaacagtgtgtttctggtgaagaagtccgtc
aacaatacattgacagatggaaggtctgtggtgattttgttggacatggagatgttgcag
tctgctgaagaaactggagggaagattggagatcccactccatatgaaacagttgttaag
acgtcatcttcacaggagtctgtctccagcacctctgtcccggcctcccctccatctgca
gcagaacgtggaccctctaagtggaacaaaagcaaccgttctcctccacgaggacagggg
aagtggttttgtgggaaagtccccccaatgacggcatcacccatgaacgcttcacccatg
aaggcgtcacccatgaaggcatcacccatggaggcgtcacccatgaaggcgtcacccatg
aaggcgtcacccatgaaggcatcacccatgaaggcatcacccatggaggcttcaacctcc
aagttttcaccaatgaaagcttcaccaatgaaacttcccctcagaagtttacacccacaa
aggtttgtccagcacttctccaggttttcttcaacaaaagtgattccaatagcaggcctc
aacccttaccaaagcaaatggactatcagagtccgagtcaccaacaagtccagcgtccgc
acctggagtaactctcgaggagacggaaggcttttctcttttgaagtactggacgagagt
ggagaaatcaaggtcacagcgttcaacaaagaagtggaccagtttttctctctagtggag
caaggcaaggtgtactacatcactaaggctacgctgaaggtagctaacaaacagttcacc
acactgaagaacaactacgagatgaccctcaacgctcactcatccgtcgtgccatgtgat
gacagtcagggcattcccacagtgaactgtgactttgtgcccattgcagagctggagaac
agcgatacagacatcattgttgatgtaattggagtgtgcaagagtgccgacgatgtatcc
cgtatcaccacaaagaccagcagagaagtctccaagagggccctccagctaatagacacg
actggcaaagtggtgacactcacactgtggggagaggaggcggagaagtttgacggctct
gttaaccccgtggtggccgtcaaaggcgctcggctgactgattttgggggcagatctgtc
tcggctttgttcagttcaacagtcatggtcaacccagacttacccgaggcttttagtctg
cgggcctggtatgaccagggaggctatgcgctggacagccaatccctcacagagaccagg
tcagcgggcagcggaacaaagaccaactggaaaatgctgagcgaagttaagaatgaacac
ctgggacatggagagaaggctgactacttcagctgcctggcgacggtcctgtacactcgt
aaggagaactgtctgtaccaggcctgtcccactgaagactgcaaaaagaaggtcatcgac
caacagaacggactgtaccgctgcgagaagtgtagccgagagttccccaacttcaaatac
cgactcatacttaatgccaacttagcagacttcggggataaccagtgggtgacatgcttc
caggagacagctgagaccctgttaggtcacagtgcagaaacactgggacagctcagagac
acagacgagaatgctttcgatgaagtctttcagaaagccaactttacaacccacatcttc
agaaaccgagtcaagctggagacgtacaacgatgagagcagagtgaaggtgacggtgatg
gaggtgcagccggtggaccacagggagttcagccggagactcctcagcaacatccgcaga
ttgtccagctga
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integrated database retrieval system
