Trematomus bernacchii (emerald rockcod): 117490199
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Entry
117490199 CDS
T09643
Symbol
chrne
Name
(RefSeq) acetylcholine receptor subunit epsilon
KO
K04817
nicotinic acetylcholine receptor epsilon
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04080
Neuroactive ligand-receptor interaction
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04080 Neuroactive ligand-receptor interaction
117490199 (chrne)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
tben04040
]
117490199 (chrne)
Ion channels [BR:
tben04040
]
Ligand-gated channels
Acetylcholine (nicotinic)
117490199 (chrne)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Neur_chan_LBD
Neur_chan_memb
Motif
Other DBs
NCBI-GeneID:
117490199
NCBI-ProteinID:
XP_033995704
EnsemblRapid:
ENSTBNG00005019843
LinkDB
All DBs
Position
Unknown
AA seq
522 aa
AA seq
DB search
MMAGCRFWIFVGVVVTILETLMVQVHCNEEVELIGDLFKDYNKNIRPVKHPDDKLNVDLK
LTLTNLISLNEKEETLTTNVWIQIQWIDYRLMWNTSDYYGIDTIRVPCNSVWLPDIVLEN
NIDGKFGVAYYANVLLGASGTIFWLPPAIYRSTCSIEITYFPFDYQNCTLAFRSQTYSAN
EVVLLLAFDDEGETMIEWVDIDPQAFTENGEWAIVHRPARKMIYERYTPDDLEYQEILFN
IVIQRKPLFYVINIILPCSLISSLVVLAYFLPAQAGGQKLTVSISVLLAQTVFLILIAQK
IPETSLSVPLIGKYLIFVMSVTTLIATNQIVVLNISLRTPSTHNMPRWIKILFLKWLPRF
LGMPPLVDDSEEVVVNGVTERRRSSFGLMQRAEEYVMKQPRSEMMFDRQRQKHGLSQSVL
DHLDISSTANLYKSLAQTAPEIKQCVDACNFIAESTRQQNNIGSEIESWVLIGKMIDKVC
FWVAISLFIIGTVAIFLSGHFNRAPEFPFSDSSRTYLPPLKM
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgatggcggggtgcaggttttggatatttgttggcgttgttgtaactatcctcgagact
ctaatggttcaggtgcactgtaatgaggaggtggagctgatcggtgacttgttcaaagac
tacaacaagaacattcgcccggtgaagcatcctgatgataagctgaacgtcgatcttaag
ctgaccctcaccaacctcatctccctgaatgaaaaggaggagactctaacgaccaatgtg
tggattcagattcaatggatagattatcgccttatgtggaacacatctgactattacggc
atcgacactattcgtgtcccatgcaacagtgtttggcttcctgacattgtccttgagaac
aacattgatggaaagtttggcgtggcgtactacgccaacgtgctgctcggcgccagtggt
actattttctggctgccgcccgccatctatcgcagcacgtgctccatcgagatcacctac
ttcccatttgattatcaaaactgcacactagcattcagatcccagacatacagtgccaat
gaagtggtcctcctcttggcttttgacgacgaaggtgaaaccatgattgagtgggtggat
atcgacccccaggctttcacagagaacggcgagtgggccattgtccatcgtccggccagg
aaaatgatctacgagcgctacaccccagatgacctggagtatcaggagatcttgttcaat
attgtcatccaaaggaagcccctcttctatgtcatcaacatcatcctgccctgctccctc
atctcctctctggtagtgctggcctacttcctacctgctcaagccggtggacagaagttg
acggtttcaatctccgtcctgctcgctcagactgtcttcctcatcctcatcgctcagaag
atccctgagacctctctctctgtgcctctcattggcaagtacctgatctttgtcatgtcc
gtcactacgctcatcgccacaaaccagattgtggtgctgaacatctcgctgcgcaccccc
agcactcacaacatgccccgttggatcaaaattctattcctgaaatggttacctcgtttc
ctgggcatgcccccgctggtggacgacagcgaggaggtcgttgtgaacggcgtgacggag
cggcgccgcagctccttcggcctcatgcagagagcagaggaatatgtgatgaaacaaccc
cggagcgagatgatgtttgacagacagagacagaagcatgggctctcacaatcagttttg
gatcatttggatatcagcagcacagccaacctgtacaagagcttggcgcagactgcaccc
gaaatcaagcaatgtgtcgacgcctgcaacttcatagccgagagcacgaggcagcaaaat
aacatcggatctgaaatagaaagctgggtgctgattggaaagatgatcgacaaggtttgt
ttctgggtcgccatctctctttttatcatcggcacggtggccatcttcttatcaggacac
ttcaaccgtgctcctgaatttcctttttctgattcgagcagaacatatttaccaccttta
aaaatgtaa
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