Trematomus bernacchii (emerald rockcod): 117490207
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Entry
117490207 CDS
T09643
Symbol
rab11fip5a
Name
(RefSeq) LOW QUALITY PROTEIN: rab11 family-interacting protein 1
KO
K12484
Rab11 family-interacting protein 1/2/5
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben04144
Endocytosis
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
117490207 (rab11fip5a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tben04131
]
117490207 (rab11fip5a)
Membrane trafficking [BR:
tben04131
]
Protein recycling
Rab GTPases and associated proteins
Rab11 associated proteins
117490207 (rab11fip5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
C2
RBD-FIP
MPH2
DUF4635
RNase_Y_N
Motif
Other DBs
NCBI-GeneID:
117490207
NCBI-ProteinID:
XP_033995755
LinkDB
All DBs
Position
Unknown
AA seq
1767 aa
AA seq
DB search
MSSLTVEDDQKWLPTHVQVTVLRGRGLRGKGKHGTSDVYTIIQLVKEKYSTGWWRKTTEP
EWREECSFELQPSVLQGGGRNGGCPAGATELVLIVMHRAIWGMDVFLGQWYKLNSKSGKK
EKERGEIQATVQFTRNNLTASMYDLVMTDKSASTFGKLKERIKGKRRSSEEDSSSAVLPS
GYGSLHRMRQRLPSDGGGEEDYEDDEGGEARRSKMRTFFLRGKLRKSSDTRSSTSLGSES
SESSRGGSLSPTAGISMVVSDLSNSPSNSSNLSPDNSPEHTANSLQCEFGDDAGEISIIV
PPLPTAWVNGGDAYSDLPLDKGSVNPVDSLGLPPLQKSLPLSVSLQNLRPASAAPKSPMG
DGRRWSFDKPDEEEKAAIAAALEKSGPMLGDEEEEEEEEGLGYAAQIKSSSSTVESEKKQ
RNFFSHGRGESAGKGQSRGKDESEQAPAAEEKHKGWFGSKDSNSKPSLVVSPKLEPSTDP
HPPPLPPSHPPGPPVDPLVSLHHTNPFSQSTSPPMSPCNPFLSFIQQNPFFDTMLNAEPL
KPSLPTLPYLSSARPPIAQLFPQASNPYPTLNDENPTAEDSSIGTKSDAKKRPLPPPPTY
EEKPLSVKSSDHFMSAGELEPEWDESFEAFAAGRLQSPEDLTADCKTQQNTPSEHSLEHC
NEKAALQPITDQNTNVNDALHTQPCTEFVFDTQKSNAYHLDTFAHFLETIPEHTSFENDN
DTLNTSTNSPTPDAFTDPHQTNAATNTNDVTDTNVHPSPGHASSVKLSSSSPDPTSSGLG
SSAEEDFLSCVSSYSDKFSASSSEEAETQNFESSILGFEKSSDSSVVRKPSDSEDDVTDR
SINLDLGNVSQHVMKHGDGDEKTDSDGILAPMSTVLTNQQSATEIRSESPIFSYFSPELQ
PKSYISLQPDNDKEEAEKQNFESSTFGSFKEEESVAKNPSESEVDITDQSICLPLDDEAQ
HNVTQHSDGGENADLDGIEGSLVPTSPKVTHQQPAGETGSKGADTQSPNVLYFSPELQPI
SKIYLQPDNEKGKEGINKKEEAEKLNFERSIVGFCKEEESVVGKPSESEVHRSNDQSLAQ
HHVTQHRDGGEKADLHGVQGSLGPMSPVLTHQQPAGETGSEDAADLLPELHTKSNIFVQS
VNENGKKGNSSAKDFVSGISPFSGKFPASSLEEAEEQNFESSVLRFSKEESVVKKPPKSE
EDATDRSNDLSLVDLAKHNVIQHGETDEKADLDGIGGSLAPLSPVISHQQPAGDTGSEDA
SSFSNLLTERHTKSDISFQPDNEKGKDIGEMNTSVEDFSKLLNDSSISEINTTDVTTPDD
ELYSTQPSLHIITSSPDVRHGSPDSPIESTGLGGQDASQRSVVPFGLFDDFLNTSPSQDF
HDTMLHTSAFDQSTSSFLQSLYVSTNSQDYQTCVSQPSSSGSEQNETLHSANSTLCGDLI
EIQTTPEAALDQKDSRSHPFHEEFDNIEGSFFGAKDTTPTLKPSFTIEDNFGLLSAASTD
LYKSYNPWNLNDEAVEYQHVVLGDMFSKSPQAQSITLPRSHSEGTLTPAFEDLLQPSYGS
DPGAIQAPSSAPPLSPDLPSLTSFAPSLTPSSSSSFSLPFLYNATARSPPQHGNAWRCTG
SSRAANQQNSPHPVKPLTTTTSAEEKRTEGRSVLATGLEKLKSSISPGRSSQLSEQETNK
KKPVSEGAGSYFHLNHSELVALLVQREAELERQEDEFKRQKRLLAKREVELKKLKPQVKD
LEDYIDTLLVRIMEQKPTLLQVRSKLK
NT seq
5304 nt
NT seq
+upstream
nt +downstream
nt
atgtcctcgctaaccgtggaggatgaccagaaatggttaccgacacacgtccaggtgacg
gtgctgagaggcaggggcttacggggcaagggcaagcatggcaccagcgatgtgtacacc
atcatccagctggtgaaggagaaatattcgaccgggtggtggaggaagaccacggagccc
gagtggagggaggagtgctcgtttgagctgcagcccagcgtgctgcagggcggcgggcgg
aacggaggctgtccggccggtgcaaccgagctggtactcatcgtgatgcaccgggcaata
tggggtatggacgtgttcctgggacagtggtacaagttaaactctaagtcggggaagaag
gagaaggagcgaggagaaatccaagccaccgtgcagttcaccagaaacaacctgacggcc
agcatgtacgacctggtcatgacggacaagagcgcctccaccttcggaaagctgaaggag
cgcatcaaggggaagaggagatccagcgaggaagactcttcctcagctgtgctgccgagt
ggatacggctccctgcaccggatgaggcagcgactcccgagcgacggaggcggggaggaa
gactacgaggacgacgagggaggggaggcccggcgcagcaagatgaggactttcttcctg
agggggaagctgaggaagtcctcggacactcgctccagcacgtcgctgggctcagagagc
agcgagtcgtcccgggggggcagtctgagccccaccgccggcatcagcatggtggtgtcc
gacctctccaactcccctagcaacagcagcaacctgtcccctgacaacagcccagagcac
acggcaaactctctccagtgtgagtttggagacgatgccggggagatctccatcatcgtg
cctcctcttccgaccgcgtgggtcaacggaggcgacgcttacagtgacctgcccctggac
aaaggctcagtaaaccctgtggattctctaggcctgccgccgctgcagaagtctttgcct
ctctccgtgtctttgcagaacctcaggcctgcctcggccgccccaaagagccccatggga
gacgggcggcgctggtcctttgacaagcccgacgaggaggagaaggcagccatagcggcg
gcgttggagaaaagcggccccatgctgggtgacgaggaggaggaggaggaagaggaggga
ttgggatatgctgctcaaatcaaatcctcatcctccacagtggagtctgagaaaaagcag
aggaactttttctcccacgggaggggggagtctgcggggaaagggcagagtcggggcaag
gatgagtctgaacaggcccccgccgccgaggagaaacacaagggatggtttggatcaaag
gactcgaacagcaaacccagcctggtggtgtcccctaaactagagcccagcactgacccc
cacccccctccactcccacccagtcaccccccgggtccccctgtcgatcccctggtttcc
ctgcatcacactaaccccttctcacagagcacctcacctcccatgtccccctgcaaccct
ttcttatctttcatccagcaaaaccctttctttgacaccatgcttaacgctgagccccta
aaaccttcgctgcctactctgccttatctctccagcgcccggcctcccatagctcagctc
tttccgcaggcgagtaacccttaccccaccctcaacgacgaaaacccaaccgcagaggac
tccagcattggcacaaagagcgacgctaagaaacgacctcttcctccacctcccacatac
gaagagaaacctttaagcgtgaagtcgtccgatcattttatgtctgccggggagctggaa
cctgaatgggacgaatcctttgaagcgttcgctgctggcaggctgcagtctcccgaggat
ctgaccgcagactgcaaaacacagcaaaacacacccagtgagcattcactggaacactgc
aacgaaaaagcagcattacaacccataacggatcaaaacactaacgtgaatgatgcacta
catactcaaccttgcacagaatttgtatttgatacacagaaatccaacgcatatcatctt
gacacatttgcacatttcctcgagacaatcccagagcacaccagctttgagaatgacaat
gacactttgaatacttccactaactcgccaacaccagatgctttcactgaccctcatcaa
actaacgctgctactaacacaaatgacgttactgacactaacgtgcatcccagccccggg
catgcctcgtctgtgaagctcagcagcagctccccagatcccacttcttcaggcctgggc
agttctgcagaagaggatttcctctcgtgtgtctcttcttattcagacaaattctctgcg
tcatcctcagaggaagccgagacacagaactttgaaagcagcatcctcggctttgagaaa
tcatccgattcatctgttgtaaggaagccctctgactcagaagatgacgttactgacagg
tccattaatctggatttaggcaatgtgtctcaacatgttatgaagcatggggatggtgat
gaaaagacggattcagacggcatattagcaccaatgtcaacagtgcttacaaatcagcag
tcagcaacagagataagaagtgagtcaccaatcttttcatacttttcaccagaactacag
ccaaaatcctacatttcgttacagcccgacaatgacaaggaggaagccgagaaacagaac
tttgaaagcagtaccttcggctcttttaaagaagaagaatctgttgcaaagaatccctca
gaatcagaagttgacattactgaccagtccatctgtcttcctttagatgatgaagcccag
cacaatgttactcagcacagcgatggtggtgaaaatgcagatttagacggtatagagggc
tcattggtaccaacgtccccaaaggtaacacatcagcagcctgcgggagagacaggaagt
aagggtgcagatacacagtcaccaaacgttttgtacttttcaccagaactgcagccaata
tccaaaatatatttacagcctgacaatgaaaagggaaaggaaggcatcaacaagaaggag
gaagccgagaaactgaactttgaaagaagcatcgtcggtttttgtaaagaagaagaatct
gttgtagggaagccgtcggaatcagaagttcacagatccaatgatcagtcattagcccag
caccatgttactcagcacagagatggtggtgaaaaggcagatttacacggtgtacagggc
tcattgggaccaatgtcaccagtgcttacacatcagcagcctgcaggagagacaggaagt
gaggatgcagcagacttgttaccagaactacacacaaaatccaacatatttgtacagtct
gtcaatgagaatggaaagaaaggcaacagctctgcaaaggattttgtgtcaggtatctct
cctttttcaggcaaattccctgcatcctccttggaggaagccgaagaacagaactttgag
agcagcgtcctccgatttagtaaagaagaatctgttgtaaagaagccgccaaaatcggaa
gaagacgctactgaccggtccaatgatctgtctttagtggatttagctaagcacaatgtt
attcagcacggggaaactgatgaaaaggctgatttagacggtatagggggctcattggca
ccgctgtccccagtgatatcacatcagcagcctgcaggagatacggggagtgaggatgct
tccagcttttcaaacttgttaacagaacgacacacaaaatccgacatctctttccagcct
gacaatgaaaaaggaaaagacattggtgaaatgaacacatctgtagaggacttttctaaa
ttgttaaatgattcctcgatatctgaaataaacacaacggatgtgacgactccagatgat
gaactgtactccacacagccatcactacacatcataacctcctcccccgatgtgaggcac
ggttcacctgactcccccattgagagcactggtttaggagggcaggatgcaagccagcgt
tcagttgtaccatttgggctttttgacgacttcctcaacaccagtcccagccaagacttt
cacgacaccatgttgcacacttctgcgtttgatcaaagcaccagcagcttcctccaaagc
ctttatgtgagcaccaactcgcaggattaccaaacctgtgtgtctcaaccttcctccagc
ggctcagagcaaaacgagacgctgcactctgcaaactcaacgctgtgtggcgatctgatt
gagattcagacaacccccgaggctgctttggaccaaaaagactccagaagccatccattt
cacgaggaattcgataatattgaaggctctttctttggagccaaggacactacaccaact
cttaaaccaagcttcacgatagaggataacttcggtttactttctgcagcatcaacagac
ctttacaagagctataatccatggaatctcaatgacgaagctgtggaatatcagcatgtc
gtcttgggtgacatgttctcgaaatcccctcaggcacaaagtattacactaccccgctca
cactctgaaggcacactgacacctgcctttgaagacctcctgcagccctcctatgggagc
gatcccggtgcaatacaggcgccctcctcggctcctcctctgagccctgacctcccctct
ctgacctcctttgctccctctctaactccttcaagtagtagctccttttccctccctttt
ctttacaacgctacggcgagatcaccaccccagcacggcaatgcttggagatgcaccggc
agcagcagggcagccaatcagcagaacagcccccacccagtgaagcccctcaccaccacc
acgtcagcggaggagaagcggacggagggccgctccgtgctggccaccggcctcgagaag
ctcaagtcctccatcagcccggggaggagcagccagctgagcgagcaggagaccaacaag
aagaagcctgtgtcggagggggcgggctcgtacttccacctgaaccacagcgagctggtc
gccctgctggtgcagcgggaggccgagctggagcgccaggaggacgagtttaaacgccag
aaacgcctgctggcgaagcgcgaggtggagctgaagaagttgaagccgcaggtcaaagat
ctggaagactacatagacacgctgctggtgcgcatcatggagcagaagcccactctcctg
caagtgcgctccaagctaaagtga
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integrated database retrieval system
