Trematomus bernacchii (emerald rockcod): 117490222
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Entry
117490222 CDS
T09643
Symbol
nfrkb
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear factor related to kappa-B-binding protein
KO
K11671
nuclear factor related to kappa-B-binding protein
Organism
tben
Trematomus bernacchii (emerald rockcod)
Pathway
tben03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
117490222 (nfrkb)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
tben03036
]
117490222 (nfrkb)
Chromosome and associated proteins [BR:
tben03036
]
Eukaryotic type
Chromatin remodeling factors
INO80 complex
117490222 (nfrkb)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
NFRKB_winged
ASXH
Motif
Other DBs
NCBI-GeneID:
117490222
NCBI-ProteinID:
XP_033995737
LinkDB
All DBs
Position
Unknown
AA seq
1271 aa
AA seq
DB search
MDALTHMLTDPLDPKEEDNGQITEECMLGNCRLNLPEDLLEDSDIFFSVLSESTWSEVLS
DSQRQHLRQFLPKFPDNNVAEQDETIGDLFNNTNFHFGNPLHLAQKQFRDGYFNPEVVKY
RQLCAKSQKKRQLHALQQYYHKLLKHILVSRKELLEFAVQNGQDFPPKRKLQTKTHAEMR
EPRVRRRLSRILKEVKTECGDSNASSDDDDISLWTPAPHSPSSPTPTVSLRVLPSLSTQD
MKITEKIELGERDLKAMLQNHRDKRKRQPDHPDLMTSDLHLGDILSRTNIGRKGTLPLFD
LSLPKKKIKDERRKKKMRTIKVESEDPCEILSPSENASAPPASIINSLPDTPSTPLANIK
EEIVEECQSSPAPVEEIAISFFSLLESILATESLTSTSLLEEKVQMWQSSPASSLNVWFS
SVPCWSDLVLQALQFLAGETKDGMMALPSGFSPFVEFADESQQWRWIGPTHDTEKDLSAL
CQLWLDSKDLVIKTENEEMLEMTSPTARVSTDYVVRPSTGDERQVFQIQEQQRYNQPHKA
FTFRMHGFESVVGPVKGVFDKEMSLNKAREHTLLRSDRPPYVTILSLVRDAAARLPNGEG
TRAEICELLKDSQFLAPDVTSAQVNTVVSGALDRLHYEKDPCVKYDIGRKLWIYLHRSRS
QEEFERIHQAQAAAAKARKALQQKPKPPSKPKSGKEGGGKTPGCLEAGQDMGSIPMSPTP
TTPTLNTPGTPKSPLPCAASMPTKTGGPDTIKTSTGVLLVSPPSLPQLGTILPSSQACPQ
VSHTVTSQHAARIVSHLAAGSLPQVRVVSAHSGLGPSAGGQQATMLHHTPHQIRMPMSMT
AKGISQTVVSLPLRTQSVSSPVHVPTTLSVSAVALAKPQARSPGSPAHNHPSSPALLHGV
TSQNIKQVSITGQLGMKHAGGAGIPITATNLRIQGKDVLRLPPSSITTDSKGQTVLRITP
DMMATLAKSPVATVKLTPDFLGSASGSKSISATLHMTPHSSPSSASGSTSDLQTSKAGSV
TSTLLKATGDIRLMPTLAVTMADQKTRTFSTVSSADKSGATIRIMPGLGVIPQKQGHTIT
MTTTTGSKTLTASTCANVVTMAASVVAGAKGLTVTPGVSCSTLTLGTATATVRQVPATVV
TTQTGKLPTRITVPISVLSQPLKSKSVVTTPMVKGSLNASLSSLGRNIILTTMPAGTKLI
AGNKPVSFVTAQQFQQLQQQGQATQVRIQTVQAQQLQQRMATGSPKSVSTVVVTTAPSPK
CAPDPPPAPKQ
NT seq
3816 nt
NT seq
+upstream
nt +downstream
nt
atggatgccctcactcacatgcttacagacccccttgatccaaaagaagaagacaatggc
caaatcacagaggagtgcatgctggggaactgtagattaaacctaccagaggacctactc
gaggactctgacattttcttctctgtgctgagtgaaagcacctggagtgaagtactgtca
gattcccagagacagcaccttcgtcagtttttgccaaagtttccagacaacaatgttgca
gaacaggatgaaaccatcggtgacctattcaacaacacaaactttcattttggaaatccc
ctccatcttgcacaaaaacagttcagagatggttacttcaatcctgaagtggtcaagtac
agacaattgtgtgccaagtcccagaagaagcgacagttacacgcccttcagcagtattac
cacaaattgttgaagcacatcctcgtctccagaaaggagttgctagagtttgcagttcaa
aatggtcaggactttccaccaaaaagaaagttgcagaccaagactcatgctgaaatgcga
gaaccaagggtgagaagaagattgagccgcatattaaaggaggtcaaaactgagtgcgga
gacagcaacgcttcctctgatgatgacgatatatcattatggaccccagcaccccattcg
ccttcctctccgacgcccactgtctcactcagagttctccccagcctctccacccaagac
atgaagattactgaaaaaatagaactaggggagagagatctaaaggccatgctgcaaaac
catcgggataagaggaagcgacagccagatcatccagacttgatgacctctgatctccac
cttggggacatactttcaagaacaaatatcggtcggaaggggacactgccactttttgat
ctgtcactgcctaagaagaagattaaagatgagagaagaaagaagaaaatgaggacaata
aaagtggaatctgaggatccctgtgaaattctctcaccttcagaaaacgcatcagctcca
ccagcgagcatcatcaactccttgccggacacgccgtccactcccctggccaacatcaaa
gaggaaattgtggaggagtgtcagagcagtccggctccagttgaggaaatagctatcagt
ttcttcagcttgttggagagcattttagcgacagaaagccttaccagcacttcattgttg
gaggaaaaagttcaaatgtggcagtcctctccagccagctccctcaacgtctggttctca
tctgtcccgtgctggtctgacttggtgcttcaagccctgcagtttcttgcaggagagact
aaagatggcatgatggcactccccagtggcttttctccatttgtggaatttgctgatgaa
tctcagcagtggaggtggatcggccccacgcacgatacagagaaggatctcagcgcactc
tgtcagctgtggctggactccaaagatttagtcatcaagaccgaaaatgaagaaatgcta
gagatgacttctcctactgcaagagtctcaactgactatgtggtacggcccagcactggg
gatgagagacaagtatttcaaatccaggagcagcagcgatacaaccagccgcataaggcc
ttcacctttaggatgcacggctttgaatctgtggtggggccggttaaaggcgtgttcgat
aaggagatgtccctcaacaaagccagggagcacacgctgctgcgctcagaccgaccacca
tatgtcaccattctttctctggtgcgagatgcagcggccaggttacccaacggagaagga
acaagggcagagatctgtgaactgttgaaagactcacaatttcttgctccagatgtaacc
agtgcacaggtgaacacggtggtcagtggggctctggatagacttcactatgagaaagac
ccctgtgtgaagtatgacattggtcgtaagctctggatttacctgcaccgcagtcgcagc
caagaggagtttgagaggatccaccaggctcaagctgctgctgcaaaagcaagaaaagcc
ctacagcagaaacctaaacctccgtcaaagcctaagtctggtaaagaaggaggcggtaaa
accccggggtgtctggaggcaggacaggatatgggctccattcctatgtccccaacccct
acaacacccactctaaacacaccaggaacccctaaatcccccttaccctgcgctgccagc
atgccaacaaagaccgggggcccggacacaatcaagaccagcacaggagttctcctcgtg
tcccccccctcgctgccccagctgggaacgatcttacccagcagtcaggcctgtccgcag
gtttcacatacggtcacgtcccaacacgcggctcggatagtgagccacctggcggcaggc
tccctccctcaggtgcgggtggtgtccgctcattcgggtctgggtccctcggcaggaggt
caacaggctaccatgttgcatcataccccccaccagataaggatgccaatgtcaatgaca
gccaagggcatctcccagacagtggtttctcttcctctgaggactcagtctgtcagtagt
ccggtccacgtgcccaccaccctctcagtgtctgctgtagctttggccaaacctcaagcc
cggtcccctggaagcccggcacacaaccacccctcttcccctgctctgctgcatggagtc
accagccagaatataaaacaggtgtctatcacaggccagttgggaatgaagcatgcagga
ggagcaggaatcccaataacagctaccaacctgcgcatccagggtaaagatgtcctccgc
ctccccccctcctccatcactacagactctaagggccagacggtgctgcggatcacccca
gacatgatggccactctcgccaaatccccagttgcgacagtcaaactcacccctgacttc
ctgggctcagcctcaggcagtaaaagcatatcagctactctgcacatgaccccccactcc
tcaccttcctctgcctccggttccacttcggatcttcagacctctaaagcaggctctgtt
acctccaccttgttgaaggccaccggcgacatccgtctgatgcccactctggctgtcact
atggcggaccaaaaaacaagaaccttctccactgtttcctccgccgacaagagcggggcc
accattcggataatgccaggcctcggtgtgatcccacagaaacagggtcacaccatcacc
atgacaaccaccactggcagtaagaccctcacagcgtctacatgtgctaacgtagtgacc
atggctgccagtgttgtggccggggccaaggggctgactgtgactccgggggtctcgtgc
tccactctgacgctaggaacagccactgccaccgtgaggcaggtccccgctacagtggtt
accacacaaacagggaagttaccaacacggataactgtacccatctctgtgctgagccaa
ccactgaagagcaagagtgttgtgaccacaccgatggtgaaaggaagtctaaacgcaagt
ctcagcagtctgggcaggaacatcatcctcaccaccatgcctgcaggcaccaagctgatc
gcagggaacaaaccggtcagcttcgtcacagcgcagcagttccagcagcttcagcagcag
ggacaggccacacaggttcgcatccagacggtccaagcgcagcagctccagcagcgcatg
gcaacaggctccccgaaatctgtttccacagttgtagtcacgacagcaccttcacccaaa
tgtgcccccgacccccctcctgcacctaaacagtga
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