Trematomus bernacchii (emerald rockcod): 117490288
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Entry
117490288 CDS
T09643
Symbol
ltn1
Name
(RefSeq) E3 ubiquitin-protein ligase listerin
KO
K22377
E3 ubiquitin-protein ligase listerin [EC:
2.3.2.27
]
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tben03009
]
117490288 (ltn1)
04121 Ubiquitin system [BR:
tben04121
]
117490288 (ltn1)
Enzymes [BR:
tben01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
117490288 (ltn1)
Ribosome biogenesis [BR:
tben03009
]
Eukaryotic type
Pre-60S particles
Ribosome quality control proteins
117490288 (ltn1)
Ubiquitin system [BR:
tben04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
117490288 (ltn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Ltn1_1st
LTN1_E3_ligase_6th
UBC_like
LTN1_E3_ligase_5th
zf-RING_2
HEAT_GCN1
zf-ANAPC11
zf-rbx1
FANCL_C
RINGv
zf-RING-like
zf-RING_16
zf-C3HC4_2
Motif
Other DBs
NCBI-GeneID:
117490288
NCBI-ProteinID:
XP_033995845
LinkDB
All DBs
Position
Unknown
AA seq
1764 aa
AA seq
DB search
MGGKNKQRTKGNVRPSSSGRAAEALTREGGVIPGFVGFDTTVNSELSYVPAVHGAEEIDN
LVDADFRLVLRKLSKRDVVTRLKAVQDFGSMCQERDAEEVKGVLPYWPRIYCKISVDHDR
RIREATQQAFEQLVLKVRRSLAPFLKSLMGHWILSQCDTYTPAASAACQAFQAAFSPSKQ
PEALSFCKDEMLNVLQDVLLKETADTLSDPQSVTEEEREGKYVRMLTSSLLGVKRLLSLL
LPSDRTALEERLTHLLNSGKFWKYGKHKTPQVRGAFFEMVCALCEYTPDLVQAEAARLCP
AVLLSIDDTDPIVLPPVWEAVLHVVSTIPDCWTHVNAKKGFLPKLWALLKEGGKGMAKSL
HPNLMPLLSKLPQQVTDPTLDFLTTFFSSLIQGLSSERAATSPSESAVIVTSVVECLRYC
ILQHAEEEEEQKKIRTILISQQLLPLLEKALGNPSLQNGPLFFSVTEMLVSWEKRAGLQG
EEEATDNRDVFQELLADFWEGLGLIFVRYADNEDADRQALEGVATLLQVMRYPERVERKH
DQKKKSVKISFSTPEDNEKSEVEGDVVEKPVQTVSELNEKTSGSLQTQHFEDVVCQLAQL
CLVHVNEKNSERHLVFLSLLLQSFHTPRVFTTLVELDDKILDCEPKDEVIKKNPAMQFLL
ERVVVWLGQEERSDTEHLVEMVFSSLSCCSQQETTRILNHITKMDVKWGIILQIIQRACT
DPKTLMSCRDWLKGSVLGEQLLALTEELCQVGESSPRSASPSSSHSWTLISLVLSQHHNN
EPLIGEVYMEKILERLHATLSETKGLSDAGNMEPLICFICDVASTFFSSVQDCLLLLSAE
ELLLTVFQLTAQDQTHTHLSDSLLGQLRKVCVAGVQSLVKHSEYEVKEGGFLHSAALWVT
KQLLTVSLDIKSLQVLILAVQSVVETIVSVCNQDSPLLVHFFTQLTPSQTEWTRIRQALP
PQWVKKPLLSSRYRGVCNKSSMDLWKVRVPTRPPAHLCACALLGRVAQSVAVTPGDQKDA
ECTSLLPNLKHTVSELLYGLQWCKEVEYTPAYSSLLTDSGLLEGLQKQVPMKDLLGTLYS
RSLEDGGLWSLTLENYIHTNNLAATGNASVRKLYGTADSLFPVCQSKLSTLQVLCPAMIN
EDRETLVALATAGIINWQDNDDVYGCLAVLLCCLKANTQVEGEVVQAVLASVMEWRTGKE
DWFLFSSDLSKATAEQLNLAVEIMRFSTWMVTHCPTVLGGNQWDFLLCSMLAWLETASEN
VSSLWNPWVQLFVCESAALIVKLNGFFSSSSPEVAEKLPSTLAAEWRDFFVEGIYNLLLP
LPINITEAFPEPDDPVFPLSVLQSVGVALTHVPLHQLKNNSLPPRFIADQKTNLPEQLQT
LLNTLCPLLLFKARPLQITVYHLLEKVMPHLPECDGEGDNNKSDDDRDEPCLSPPASLMA
VLSTCEELCDSILAGVQVGEFAVVQPLGVEYSCILGYLLAWKLLLTFFKSSPSHLRAHYA
QYLKRSCSLNKLLLHLFKMMPENPIYPGQGAESKETKTFFTESQSLAVDNSDGVEWELPH
LACSVYYSTVQDLPAMVRLWWNGQEKRVSTTAEKFTIKYVSPVLSAQEISSVHSSTQMFE
SMTVKARSAAREVIATYSVDDIFIELVIQLPQNYPLGSITVESGRRVGVAVQQWRNWMLQ
LSTYLTHQNGSIMEGLALWKNNVDKRFEGIEDCMICFSVIHGSNYSLPKKGCRTCKKKFH
SACLYKWFTSSNKSTCPLCRETFF
NT seq
5295 nt
NT seq
+upstream
nt +downstream
nt
atggggggtaagaataaacaacgaaccaaaggaaatgtccggccgtccagtagcggccga
gctgcggaggcacttacccgggagggaggcgtcatcccgggctttgtgggcttcgacacg
acggtcaactcggagctgagttatgtccccgctgtccacggggcggaggagatagacaac
ctggtggatgcagatttccgcctggtgctcaggaaactgtcaaagagggatgttgttacc
agactgaaagctgtgcaggactttggatccatgtgccaggaacgggatgctgaagaggtg
aaaggcgtcctgccgtactggccgaggatttactgcaagatatcagtggaccatgatcgg
cggatcagggaggccacccagcaggcctttgagcagctggtgctgaaagtgcgccgcagc
ttggccccctttctgaagagcttgatgggccactggatcctgtcccagtgtgacacttac
acacctgcagcctctgcggcgtgccaggccttccaggctgcgttctcccccagcaaacag
cccgaggctctcagcttctgcaaggatgagatgctaaacgtacttcaagatgttttgtta
aaggaaacggcagacacgctgagcgatccacaaagtgtgacagaggaggagagagaaggc
aaatatgtgcgcatgctgaccagctctctgttgggggtgaagagattgctctcgctgcta
ctgccgagcgacaggacggccctggaggagagactaacacatcttctcaactctgggaag
ttctggaagtacggcaaacacaagacaccacaggtgcgaggggccttttttgagatggtg
tgtgctctgtgtgagtacactccagatctggtgcaggctgaagccgctcgactctgcccc
gctgttctcctcagcatcgacgacacggaccccatagtgctgccccctgtgtgggaggct
gttcttcatgtggtgtctaccatccccgattgctggacacacgtgaacgctaagaagggc
ttcttacctaaactttgggcactattaaaagaggggggcaagggaatggctaaatccctc
caccctaatctaatgccactcctcagcaaactgccccaacaggtcaccgatccaaccttg
gacttcctcaccaccttcttctcctcattaatacaaggtctgtctagtgagcgcgcagca
acaagcccatcggaaagtgcagtcatcgtgacctctgttgttgagtgtttgaggtactgc
atactgcaacatgcagaagaagaggaggagcagaaaaaaatacgaacaatacttatctca
cagcagctgcttcctctactagaaaaggctctcggaaatccctcccttcaaaatgggcct
cttttcttttcggtcactgaaatgcttgtttcctgggagaaaagggcaggcctacagggt
gaagaggaagctacagacaaccgagatgtctttcaagagcttctggctgatttctgggag
gggcttggtcttatctttgtgcgttatgccgacaatgaggatgcagatcgacaagctttg
gaaggggtagccaccctgctgcaggtaatgcgttaccctgagagagtagaaagaaagcac
gaccagaagaagaaatctgtcaagatcagtttctccacaccagaggacaatgagaaaagt
gaagtggagggggatgttgtcgagaagcctgttcagacggtgtcggagctgaatgagaag
acatctgggtccctacagacccagcattttgaagatgtagtgtgccagctggcacaactg
tgcctggtacatgtgaatgagaaaaactcggagagacatcttgttttcctctctcttctc
ctgcaatcgttccacactcccagggtcttcactacgttggtggaattggatgacaaaata
ctggactgtgagccgaaggacgaggtgattaaaaagaacccggcgatgcagttcctgctg
gagcgggtggtggtgtggctggggcaggaggagcgcagcgacactgagcatctggtggag
atggtcttcagctctctctcctgctgcagccagcaggagaccacccgcatcctcaaccac
atcaccaagatggatgtaaaatggggaatcatcctgcaaattatacagagggcatgtaca
gatcctaagactctgatgagctgtcgtgattggctgaaaggttcagttctgggcgagcag
ctcctggcactgactgaagagctgtgccaggtgggagagagctcccccaggtctgcctct
ccatccagcagccacagctggacactgatcagcctggtcctctctcagcaccacaacaat
gaacctctaataggggaggtgtacatggagaagatcttggaaaggcttcatgccactctg
tctgagaccaagggtctgtccgatgccggcaacatggagccactcatctgcttcatctgt
gatgtggcctccaccttcttctcctccgtacaagactgtcttctcctgctctctgccgag
gaactcctgctcacggtcttccagttgactgcccaagaccaaacacacactcatctgtct
gactcacttttaggtcaactgcggaaagtatgtgtggctggggtccagtcattggtcaaa
cactctgaatatgaagtcaaggaagggggcttcctgcacagtgcagctctttgggtgacc
aaacaactactcaccgtctctctggatattaaaagtttgcaggttctaattctggctgta
cagagcgtagtggagacaatcgtctctgtctgcaaccaggactcccccctcctggtccac
ttcttcacacaactgacgcccagccagacagaatggacaagaatccgacaagctctgcct
cctcagtgggtcaaaaaacctttactgtccagccgttaccgaggagtttgcaataaatcc
tccatggacctctggaaggttagggtgccaaccaggccgccggcacacctctgtgcctgt
gccctgctggggagagtagcccagagtgttgcagtcacacctggtgaccaaaaggacgca
gaatgcacttcactcttgccaaaccttaagcacacggtgtcagagctgttgtatggactg
cagtggtgtaaggaggtagagtacacccccgcctacagcagcctgctgactgactcaggg
ctgttagaaggactccagaaacaggttcctatgaaagacctgctggggactctctactca
aggtcattggaggatggaggtctttggtctctgactctagaaaactacatccacaccaac
aacttggcagccactggcaatgcgtctgtgaggaagctttacggcaccgcagacagtttg
ttcccagtgtgtcaaagcaaactgagtacgctccaggtactctgccccgccatgatcaac
gaagacagagagactctcgttgctctggcaactgctggaataatcaactggcaagacaat
gacgatgtgtatgggtgtctggcggtgctgctatgctgccttaaagccaacacacaagtg
gagggagaggtggtgcaggctgtcctggcctctgtgatggagtggaggaccggcaaggag
gactggttcctcttcagcagtgacctgtccaaagcaactgcagaacagctgaacctcgct
gtggagataatgcgtttctctacctggatggtgactcattgtccgacggttctcgggggc
aaccagtgggacttcctgctctgctctatgttagcctggttagagactgccagcgagaat
gtgagcagcctctggaacccgtgggtgcagctgtttgtgtgtgagtcagctgcattgata
gtgaagctgaatgggttcttctcatcatcatcgcccgaagtagcggagaagctgccgtcc
acactggccgctgaatggagagacttcttcgtagaaggaatctacaacctgctacttcct
ctgcccatcaacatcacagaagccttccctgaaccagatgaccctgtgttcccattgtcg
gtgctgcagtcggtcggcgtggctctgacacatgtgcctctccatcagctcaaaaacaac
tccctgcctccacggttcatagcagaccagaagacaaacctgccagagcagcttcagacg
ctgctcaacactttatgtcctctgctgctctttaaggccaggcctctgcagatcactgtc
taccacttgttagaaaaggtgatgcctcatctgcccgagtgtgatggtgaaggagacaac
aacaagtctgatgatgatagagatgagccatgtctttcccccccagcatctctaatggcc
gtcctgtcgacctgtgaggaactgtgcgatagcatcttggccggggttcaagtgggagag
tttgcagttgtgcagcctctcggtgtggagtactcctgcatcctgggatacctcctggct
tggaagctgctcctcacttttttcaaatcttcaccatcccatctgcgagcccactatgcc
cagtatcttaagagaagctgctccctcaacaagctgctccttcacctatttaaaatgatg
cctgagaaccccatctaccccggccagggggcggagtcaaaggagaccaaaaccttcttc
acagagagccagtctctagctgtggacaacagtgacggtgtcgagtgggagctccctcac
ctggcctgcagcgtgtactacagcacggtgcaggacctgccggccatggtgcggctgtgg
tggaacggccaggagaagagagtgagcaccactgcggagaagttcactattaaatacgtc
agccctgtcctctcggcccaggagatctcgtctgtccactccagcactcagatgttcgag
agcatgactgtgaaggcccgctctgcagcgcgggaggtgattgctacctattctgtggat
gacatcttcattgagttggtgattcagcttccacagaactaccctctgggctctatcact
gtggagagtgggaggcgtgtgggagtcgccgtgcagcagtggaggaactggatgctgcag
ctgagcacctacctcacacaccagaatggcagcataatggagggcctggctctgtggaag
aacaacgtggataagcgcttcgagggaatagaggattgtatgatctgcttctctgtgatc
cacggctccaactactccctgcccaagaagggctgccgcacctgcaagaagaagttccac
tcggcgtgtttgtacaaatggttcacctccagcaacaagtccacctgtcctctgtgcaga
gaaaccttcttctaa
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integrated database retrieval system
