Trematomus bernacchii (emerald rockcod): 117490317
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Entry
117490317 CDS
T09643
Name
(RefSeq) thrombospondin type-1 domain-containing protein 1
KO
K24433
thrombospondin type-1 domain-containing protein 1
Organism
tben
Trematomus bernacchii (emerald rockcod)
Brite
KEGG Orthology (KO) [BR:
tben00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04990 Domain-containing proteins not elsewhere classified [BR:
tben04990
]
117490317
Domain-containing proteins not elsewhere classified [BR:
tben04990
]
Thrombospondin domain-containing proteins
Other thrombospondin domain-containing proteins
117490317
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
THSD1_N
THSD1_D3
THSD1_D2
TSP_1
TSP1_spondin
TSP1_ADAMTS
TSP1_CFP_C
TSP1_CCN
Motif
Other DBs
NCBI-GeneID:
117490317
NCBI-ProteinID:
XP_033995908
LinkDB
All DBs
Position
Unknown
AA seq
928 aa
AA seq
DB search
MPQAVSLLPFLLALMGYAFAGLNIWPSLHVALSNASVFVDFSTKSNSSTACNTSLSLVNT
ETNTTVQTRTLPDNQSAGRVEFNCSCFLYAGTFRFQLRQTSTSAVSPANGTHDSRVESTT
WWWSSELQVQWPTFHIAVDRAGNHSGSFQVGISTNEHFQACSSGIDSALLLEVSYMEYNQ
IGRITIDKVKARKQHSIKPLRSQSVELSCAFPFTERDFIRVSLRSPHAAQDVKSSGPLYL
SRIFSYKLLVENTNAYRSGCEGTMTVKLITPPCVHVNGKVMLYKEAGVGRGVAVSSGMDG
GGTALGPEEPSSPLLAYNWLTQGENETEFNCSVFDPGRYKYCFRFVFNFSRSPSPAQTCL
VVHKSAESWGPWLPWSVCSVSCGEGVRERERECLLPSGVGGMQCTGMVKEQSLCSLENCV
VLPTPSPSLPPVGVGATPLGGNIVVVAGISLCLAVILATVVVTLWRKLCKTPQCNSVRRG
SMHSPGGRKLSDEASICGHSLQRPSLIDGHGLQGGIGVGVGVAQKDSPSLGSQPLPQTLV
VPLSQDPERLSPTCQKLLPPIFGYRLAQQQLKEMKKKGIREAIQLYHVSSSPVHDTLASA
SPTSSLIPTPTGFTHPALPLDLQDDANHNYFQSQTPRATPDRLSPRVELVLGPSASAHAR
GGSSNRRDRTADWVEMVERSGLSGLRGGGGDAEMGNSYHKNPNFRRTSSFNDTKPQPLSS
VHSRQFRERSMTQVGSRTLPEGSCWNKGGRDRQPYSSYPIPEHGTPDWAKSRAQRNDQRK
PWIDTAATSHNNEIKHTGTNTNSISASEKHVKADLSGTGGGQGISGIGGPAAGPQHLSVD
RAERAEQNWNRRGPSPIQRNILARKLKEAQSCSGVRGRQRSSTFSATPTEQRTGRCNSLP
MSGGYRLSEAEQRMLDLDLSSAYVGEEE
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgccacaagctgtctcactgctgcccttcctgctggcgctcatgggatatgcttttgca
gggctcaatatctggccctccttgcacgttgcccttagcaatgccagtgtatttgtggac
ttcagcacaaaatccaacagcagcacggcctgcaacacgagcctctctctggtcaacacg
gaaaccaacaccactgttcagaccaggactctccccgacaaccaatcggctggcagggtg
gagttcaactgttcttgcttcctgtacgcaggaactttccggttccagttgaggcagacc
agcacctcggctgtttctcctgctaatggcacacatgacagtcgagtggaaagtactacc
tggtggtggagttcagaactgcaggtgcagtggcccacctttcacatcgctgtggacagg
gccggaaaccactcgggatcttttcaggttgggatatccaccaatgaacactttcaggct
tgctccagcggtattgactcggctctcctcctagaagtcagctacatggagtacaaccag
ataggacggatcaccatcgacaaggtcaaagcccgcaaacaacactcaatcaaacccctc
cgctcccagagtgtagagctgtcctgcgccttccccttcacagaacgagacttcatacga
gtgtctctacgctctcctcatgcagcgcaggatgtgaagagctccgggcctctctacctg
tcccgtatcttctcctataagctgctagtggaaaacaccaatgcctacaggagtggttgt
gaaggaactatgactgttaaactgataactccaccttgtgtgcacgtcaatgggaaagtg
atgctttataaggaggcaggtgttgggagaggcgttgctgtctcctccgggatggacgga
ggaggaacagcactaggaccagaggagccctcctcaccactgttggcctataactggctg
actcagggagagaatgagactgagttcaactgttctgtgtttgacccagggaggtacaag
tactgctttcgcttcgttttcaacttcagtcgttcccctagtcctgcacagacctgtttg
gtggttcacaagagtgcagagtcatggggcccgtggctgccatggagtgtgtgcagtgtg
agctgtggagagggggtgagggagcgagagcgcgagtgtttgctgccctcaggtgtgggg
gggatgcagtgcacgggcatggtgaaggaacagtccctctgctcactggagaactgtgtg
gtgttgcctactccttctccatccctcccccctgtgggtgttggtgcaacaccccttggt
ggtaacatagttgtggtggccggtatctccctttgcctggctgtgattctggctactgtt
gtggtgactttgtggaggaagctttgcaagaccccccagtgcaactctgtccgcagaggc
tccatgcattcccctggaggacgcaagctctccgatgaggcgtccatttgtggccacagc
ctccaaagacccagcctgattgatggccatggactacaggggggtataggtgtgggtgtg
ggtgtagcccagaaggacagcccttctttgggcagtcagcctctcccacagaccctggtt
gtacctctctcacaggacccagaaaggctttcccccacatgtcagaagctgttgccacca
atattcgggtaccgattggctcagcagcagttgaaagagatgaagaagaagggtataaga
gaggccattcagctctaccatgtctcttcgagcccagtccatgacaccctggcatctgct
tcgcccacaagctcgcttatccctacaccaactggatttactcaccccgcgctcccgtta
gacctccaggacgacgcaaaccacaattattttcaatcgcagactcctagggccacgccg
gaccgactgagtcccagagtggagctggtcttaggtccgtctgcctccgcccatgcaaga
gggggcagctcaaataggcgggaccgcactgcagactgggtggagatggtagagagaagt
gggttatcaggtctcagaggaggagggggagatgcagagatgggaaactcctatcataag
aatccaaatttccgccggacctccagtttcaatgacaccaaaccccaacctctatcctct
gtacactccaggcagtttagagaaaggagcatgacacaggtgggatctcggacccttcct
gaaggtagttgttggaataaaggaggacgagacaggcagccatacagctcctaccccatt
ccagagcacgggaccccagactgggctaaatccagagcccagaggaatgaccaaaggaaa
ccgtggatagacacagctgcgacttcacacaacaatgaaatcaaacacacaggaaccaac
acaaacagcatttcagcatctgagaagcatgttaaagcagacctcagtggtactggaggt
ggacagggaatctctgggatagggggtccggcagcagggcctcaacacctgagtgttgat
cgggcagagcgggccgagcagaactggaaccgccgcggcccgtcgcctatccagaggaac
atcctggctcgcaaattaaaggaggctcagtcgtgctcgggggtcaggggccggcagcgc
agctccacctttagtgcaacgcccacggagcagaggacaggtcgctgcaactctctgccc
atgtccggaggctacaggctgagtgaggccgagcagaggatgctagacctcgatctgtcc
tcagcatatgtaggggaagaggagtag
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